data_7KYV # _model_server_result.job_id 5SAXI-qDRC_F4aVsFDjNdQ _model_server_result.datetime_utc '2024-10-18 04:20:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 7KYV # _exptl.entry_id 7KYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KYV _cell.length_a 85.288 _cell.length_b 85.288 _cell.length_c 139.216 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 304 n y N1 C6 ORO sing 305 n y N1 HN1 ORO sing 306 n n C2 O2 ORO doub 307 n n C2 N3 ORO sing 308 n y N3 C4 ORO sing 309 n y N3 HN3 ORO sing 310 n n C4 O4 ORO doub 311 n n C4 C5 ORO sing 312 n y C5 C6 ORO doub 313 n y C5 H5 ORO sing 314 n n C6 C7 ORO sing 315 n n C7 O71 ORO doub 316 n n C7 O72 ORO sing 317 n n O72 HO7 ORO sing 318 n n # _atom_sites.entry_id 7KYV _atom_sites.fract_transf_matrix[1][1] 0.011725 _atom_sites.fract_transf_matrix[1][2] 0.006769 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XBY A 1 1001 1001 XBY 634 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 GOL A 1 1004 1004 GOL GOL . F 5 GOL A 1 1005 1005 GOL GOL . G 5 GOL A 1 1006 1007 GOL GOL . H 5 GOL A 1 1007 1008 GOL GOL . I 6 HOH A 1 1101 35 HOH HOH . I 6 HOH A 2 1102 22 HOH HOH . I 6 HOH A 3 1103 4 HOH HOH . I 6 HOH A 4 1104 45 HOH HOH . I 6 HOH A 5 1105 24 HOH HOH . I 6 HOH A 6 1106 43 HOH HOH . I 6 HOH A 7 1107 11 HOH HOH . I 6 HOH A 8 1108 38 HOH HOH . I 6 HOH A 9 1109 17 HOH HOH . I 6 HOH A 10 1110 42 HOH HOH . I 6 HOH A 11 1111 14 HOH HOH . I 6 HOH A 12 1112 5 HOH HOH . I 6 HOH A 13 1113 9 HOH HOH . I 6 HOH A 14 1114 30 HOH HOH . I 6 HOH A 15 1115 15 HOH HOH . I 6 HOH A 16 1116 41 HOH HOH . I 6 HOH A 17 1117 33 HOH HOH . I 6 HOH A 18 1118 19 HOH HOH . I 6 HOH A 19 1119 2 HOH HOH . I 6 HOH A 20 1120 12 HOH HOH . I 6 HOH A 21 1121 3 HOH HOH . I 6 HOH A 22 1122 61 HOH HOH . I 6 HOH A 23 1123 48 HOH HOH . I 6 HOH A 24 1124 27 HOH HOH . I 6 HOH A 25 1125 1 HOH HOH . I 6 HOH A 26 1126 10 HOH HOH . I 6 HOH A 27 1127 69 HOH HOH . I 6 HOH A 28 1128 56 HOH HOH . I 6 HOH A 29 1129 21 HOH HOH . I 6 HOH A 30 1130 89 HOH HOH . I 6 HOH A 31 1131 6 HOH HOH . I 6 HOH A 32 1132 25 HOH HOH . I 6 HOH A 33 1133 44 HOH HOH . I 6 HOH A 34 1134 20 HOH HOH . I 6 HOH A 35 1135 64 HOH HOH . I 6 HOH A 36 1136 78 HOH HOH . I 6 HOH A 37 1137 16 HOH HOH . I 6 HOH A 38 1138 31 HOH HOH . I 6 HOH A 39 1139 32 HOH HOH . I 6 HOH A 40 1140 68 HOH HOH . I 6 HOH A 41 1141 80 HOH HOH . I 6 HOH A 42 1142 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . D 4 79.796 19.055 7.243 1 29.38 ? N1 ORO 1003 A 1 HETATM 2 C C2 ORO . . . D 4 79.07 19.986 7.964 1 23.63 ? C2 ORO 1003 A 1 HETATM 3 O O2 ORO . . . D 4 78.443 20.85 7.387 1 33.81 ? O2 ORO 1003 A 1 HETATM 4 N N3 ORO . . . D 4 79.065 19.904 9.303 1 12.28 ? N3 ORO 1003 A 1 HETATM 5 C C4 ORO . . . D 4 79.779 18.927 9.941 1 18.66 ? C4 ORO 1003 A 1 HETATM 6 O O4 ORO . . . D 4 79.783 18.852 11.138 1 19.24 ? O4 ORO 1003 A 1 HETATM 7 C C5 ORO . . . D 4 80.494 18.024 9.219 1 24.64 ? C5 ORO 1003 A 1 HETATM 8 C C6 ORO . . . D 4 80.489 18.105 7.865 1 27.11 ? C6 ORO 1003 A 1 HETATM 9 C C7 ORO . . . D 4 81.264 17.101 7.04 1 30.05 ? C7 ORO 1003 A 1 HETATM 10 O O71 ORO . . . D 4 80.743 16.693 5.99 1 35.39 ? O71 ORO 1003 A 1 HETATM 11 O O72 ORO . . . D 4 82.429 16.665 7.401 1 37.27 ? O72 ORO 1003 A 1 HETATM 12 H HN1 ORO . . . D 4 79.801 19.09 6.382 1 35.23 ? HN1 ORO 1003 A 1 HETATM 13 H HN3 ORO . . . D 4 78.566 20.524 9.806 1 14.71 ? HN3 ORO 1003 A 1 HETATM 14 H H5 ORO . . . D 4 81.032 17.29 9.692 1 29.54 ? H5 ORO 1003 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #