data_7KYV # _model_server_result.job_id UFMNGp-NZw49ax0-W83jYQ _model_server_result.datetime_utc '2024-11-25 16:57:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 7KYV # _exptl.entry_id 7KYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KYV _cell.length_a 85.288 _cell.length_b 85.288 _cell.length_c 139.216 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 7KYV _atom_sites.fract_transf_matrix[1][1] 0.011725 _atom_sites.fract_transf_matrix[1][2] 0.006769 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XBY A 1 1001 1001 XBY 634 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 GOL A 1 1004 1004 GOL GOL . F 5 GOL A 1 1005 1005 GOL GOL . G 5 GOL A 1 1006 1007 GOL GOL . H 5 GOL A 1 1007 1008 GOL GOL . I 6 HOH A 1 1101 35 HOH HOH . I 6 HOH A 2 1102 22 HOH HOH . I 6 HOH A 3 1103 4 HOH HOH . I 6 HOH A 4 1104 45 HOH HOH . I 6 HOH A 5 1105 24 HOH HOH . I 6 HOH A 6 1106 43 HOH HOH . I 6 HOH A 7 1107 11 HOH HOH . I 6 HOH A 8 1108 38 HOH HOH . I 6 HOH A 9 1109 17 HOH HOH . I 6 HOH A 10 1110 42 HOH HOH . I 6 HOH A 11 1111 14 HOH HOH . I 6 HOH A 12 1112 5 HOH HOH . I 6 HOH A 13 1113 9 HOH HOH . I 6 HOH A 14 1114 30 HOH HOH . I 6 HOH A 15 1115 15 HOH HOH . I 6 HOH A 16 1116 41 HOH HOH . I 6 HOH A 17 1117 33 HOH HOH . I 6 HOH A 18 1118 19 HOH HOH . I 6 HOH A 19 1119 2 HOH HOH . I 6 HOH A 20 1120 12 HOH HOH . I 6 HOH A 21 1121 3 HOH HOH . I 6 HOH A 22 1122 61 HOH HOH . I 6 HOH A 23 1123 48 HOH HOH . I 6 HOH A 24 1124 27 HOH HOH . I 6 HOH A 25 1125 1 HOH HOH . I 6 HOH A 26 1126 10 HOH HOH . I 6 HOH A 27 1127 69 HOH HOH . I 6 HOH A 28 1128 56 HOH HOH . I 6 HOH A 29 1129 21 HOH HOH . I 6 HOH A 30 1130 89 HOH HOH . I 6 HOH A 31 1131 6 HOH HOH . I 6 HOH A 32 1132 25 HOH HOH . I 6 HOH A 33 1133 44 HOH HOH . I 6 HOH A 34 1134 20 HOH HOH . I 6 HOH A 35 1135 64 HOH HOH . I 6 HOH A 36 1136 78 HOH HOH . I 6 HOH A 37 1137 16 HOH HOH . I 6 HOH A 38 1138 31 HOH HOH . I 6 HOH A 39 1139 32 HOH HOH . I 6 HOH A 40 1140 68 HOH HOH . I 6 HOH A 41 1141 80 HOH HOH . I 6 HOH A 42 1142 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 104.048 39.675 5.942 1 56.94 ? C1 GOL 1005 A 1 HETATM 2 O O1 GOL . . . F 5 103.165 38.886 5.213 1 41.87 ? O1 GOL 1005 A 1 HETATM 3 C C2 GOL . . . F 5 103.485 41.111 5.899 1 66.9 ? C2 GOL 1005 A 1 HETATM 4 O O2 GOL . . . F 5 102.114 41.132 5.745 1 70.83 ? O2 GOL 1005 A 1 HETATM 5 C C3 GOL . . . F 5 103.984 41.696 7.227 1 74.01 ? C3 GOL 1005 A 1 HETATM 6 O O3 GOL . . . F 5 103.479 42.993 7.3 1 79.34 ? O3 GOL 1005 A 1 HETATM 7 H H11 GOL . . . F 5 104.947 39.668 5.578 1 68.3 ? H11 GOL 1005 A 1 HETATM 8 H H12 GOL . . . F 5 104.133 39.388 6.865 1 68.3 ? H12 GOL 1005 A 1 HETATM 9 H H2 GOL . . . F 5 103.808 41.623 5.14 1 80.25 ? H2 GOL 1005 A 1 HETATM 10 H H31 GOL . . . F 5 104.953 41.656 7.247 1 88.78 ? H31 GOL 1005 A 1 HETATM 11 H H32 GOL . . . F 5 103.689 41.125 7.954 1 88.78 ? H32 GOL 1005 A 1 HETATM 12 H HO3 GOL . . . F 5 102.873 43.062 6.693 1 95.18 ? HO3 GOL 1005 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #