data_7KZI # _model_server_result.job_id gC-ymoherdEmAEoGPsaE7g _model_server_result.datetime_utc '2025-07-05 15:15:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 7KZI # _exptl.entry_id 7KZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KZI _cell.length_a 121.518 _cell.length_b 121.518 _cell.length_c 457.878 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1 B,G,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O1G ATP . A ATP 701 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc2 C O1B ATP . A ATP 701 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc3 F MG MG . A MG 704 1_555 L O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc4 F MG MG . A MG 704 1_555 L O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 F MG MG . A MG 704 1_555 L O HOH . A HOH 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc6 F MG MG . A MG 704 1_555 L O HOH . A HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc7 H O1G ATP . B ATP 702 1_555 J MG MG . B MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc8 H O1B ATP . B ATP 702 1_555 J MG MG . B MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc9 J MG MG . B MG 704 1_555 M O HOH . B HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc10 J MG MG . B MG 704 1_555 M O HOH . B HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc11 J MG MG . B MG 704 1_555 M O HOH . B HOH 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc12 J MG MG . B MG 704 1_555 M O HOH . B HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7KZI _atom_sites.fract_transf_matrix[1][1] 0.008229 _atom_sites.fract_transf_matrix[1][2] 0.004751 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 701 629 ATP ATP . D 3 SO4 A 1 702 630 SO4 SO4 . E 3 SO4 A 1 703 631 SO4 SO4 . F 4 MG A 1 704 633 MG MG . G 3 SO4 B 1 701 632 SO4 SO4 . H 2 ATP B 1 702 629 ATP ATP . I 3 SO4 B 1 703 630 SO4 SO4 . J 4 MG B 1 704 631 MG MG . K 5 CL B 1 705 632 CL CL . L 6 HOH A 1 801 636 HOH HOH . L 6 HOH A 2 802 634 HOH HOH . L 6 HOH A 3 803 635 HOH HOH . L 6 HOH A 4 804 637 HOH HOH . M 6 HOH B 1 801 635 HOH HOH . M 6 HOH B 2 802 633 HOH HOH . M 6 HOH B 3 803 634 HOH HOH . M 6 HOH B 4 804 636 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 -26.904 -20.283 -58.554 1 51.63 ? PG ATP 701 A 1 HETATM 2 O O1G ATP . . . C 2 -27.738 -21.423 -58.965 1 53.67 ? O1G ATP 701 A 1 HETATM 3 O O2G ATP . . . C 2 -25.966 -20.653 -57.474 1 42.91 ? O2G ATP 701 A 1 HETATM 4 O O3G ATP . . . C 2 -27.812 -19.235 -58.003 1 43.38 ? O3G ATP 701 A 1 HETATM 5 P PB ATP . . . C 2 -26.955 -19.331 -61.135 1 51.82 ? PB ATP 701 A 1 HETATM 6 O O1B ATP . . . C 2 -28.261 -20.026 -61.241 1 56.63 ? O1B ATP 701 A 1 HETATM 7 O O2B ATP . . . C 2 -27.017 -17.851 -61.254 1 49.84 ? O2B ATP 701 A 1 HETATM 8 O O3B ATP . . . C 2 -26.171 -19.768 -59.84 1 57.31 ? O3B ATP 701 A 1 HETATM 9 P PA ATP . . . C 2 -26.092 -20.266 -63.549 1 57.27 ? PA ATP 701 A 1 HETATM 10 O O1A ATP . . . C 2 -26.333 -19.091 -64.435 1 49.66 ? O1A ATP 701 A 1 HETATM 11 O O2A ATP . . . C 2 -26.957 -21.432 -63.719 1 50.36 ? O2A ATP 701 A 1 HETATM 12 O O3A ATP . . . C 2 -25.854 -19.914 -62.055 1 58.55 ? O3A ATP 701 A 1 HETATM 13 O O5' ATP . . . C 2 -24.591 -20.771 -63.758 1 57.99 ? O5' ATP 701 A 1 HETATM 14 C C5' ATP . . . C 2 -23.575 -19.789 -64.012 1 57.24 ? C5' ATP 701 A 1 HETATM 15 C C4' ATP . . . C 2 -22.151 -20.431 -64.076 1 55.91 ? C4' ATP 701 A 1 HETATM 16 O O4' ATP . . . C 2 -22.042 -21.368 -65.179 1 61.05 ? O4' ATP 701 A 1 HETATM 17 C C3' ATP . . . C 2 -21.114 -19.315 -64.37 1 56.05 ? C3' ATP 701 A 1 HETATM 18 O O3' ATP . . . C 2 -20.207 -19.145 -63.262 1 60.36 ? O3' ATP 701 A 1 HETATM 19 C C2' ATP . . . C 2 -20.385 -19.749 -65.651 1 54.27 ? C2' ATP 701 A 1 HETATM 20 O O2' ATP . . . C 2 -18.957 -19.588 -65.569 1 64.53 ? O2' ATP 701 A 1 HETATM 21 C C1' ATP . . . C 2 -20.82 -21.204 -65.924 1 54.34 ? C1' ATP 701 A 1 HETATM 22 N N9 ATP . . . C 2 -21.136 -21.451 -67.325 1 49.08 ? N9 ATP 701 A 1 HETATM 23 C C8 ATP . . . C 2 -22.114 -20.789 -68.082 1 45.59 ? C8 ATP 701 A 1 HETATM 24 N N7 ATP . . . C 2 -22.101 -21.148 -69.376 1 47.07 ? N7 ATP 701 A 1 HETATM 25 C C5 ATP . . . C 2 -21.195 -22.175 -69.361 1 47.3 ? C5 ATP 701 A 1 HETATM 26 C C6 ATP . . . C 2 -20.837 -23.022 -70.404 1 48.87 ? C6 ATP 701 A 1 HETATM 27 N N6 ATP . . . C 2 -21.319 -22.837 -71.65 1 48.27 ? N6 ATP 701 A 1 HETATM 28 N N1 ATP . . . C 2 -20.027 -24.071 -70.247 1 44.53 ? N1 ATP 701 A 1 HETATM 29 C C2 ATP . . . C 2 -19.609 -24.251 -68.982 1 45.64 ? C2 ATP 701 A 1 HETATM 30 N N3 ATP . . . C 2 -19.792 -23.438 -67.922 1 46.3 ? N3 ATP 701 A 1 HETATM 31 C C4 ATP . . . C 2 -20.624 -22.403 -68.153 1 46.28 ? C4 ATP 701 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #