data_7KZU # _model_server_result.job_id A6VIitg-h0jcaJKClm-jlQ _model_server_result.datetime_utc '2025-07-05 01:14:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kzu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7KZU # _exptl.entry_id 7KZU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7KZU _cell.length_a 145.135 _cell.length_b 145.135 _cell.length_c 122.212 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KZU _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O3G ATP . A ATP 601 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc2 B O1B ATP . A ATP 601 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc3 C MG MG . A MG 602 1_555 G O HOH . A HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc4 C MG MG . A MG 602 1_555 G O HOH . A HOH 740 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc5 C MG MG . A MG 602 1_555 G O HOH . A HOH 748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc6 C MG MG . A MG 602 1_555 G O HOH . A HOH 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7KZU _atom_sites.fract_transf_matrix[1][1] 0.00689 _atom_sites.fract_transf_matrix[1][2] 0.003978 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 601 551 ATP ATP . C 3 MG A 1 602 552 MG MG . D 4 GOL A 1 603 553 GOL GOL . E 4 GOL A 1 604 554 GOL GOL . F 5 SO4 A 1 605 555 SO4 SO4 . G 6 HOH A 1 701 707 HOH HOH . G 6 HOH A 2 702 710 HOH HOH . G 6 HOH A 3 703 663 HOH HOH . G 6 HOH A 4 704 596 HOH HOH . G 6 HOH A 5 705 684 HOH HOH . G 6 HOH A 6 706 637 HOH HOH . G 6 HOH A 7 707 563 HOH HOH . G 6 HOH A 8 708 664 HOH HOH . G 6 HOH A 9 709 651 HOH HOH . G 6 HOH A 10 710 569 HOH HOH . G 6 HOH A 11 711 690 HOH HOH . G 6 HOH A 12 712 702 HOH HOH . G 6 HOH A 13 713 695 HOH HOH . G 6 HOH A 14 714 590 HOH HOH . G 6 HOH A 15 715 683 HOH HOH . G 6 HOH A 16 716 594 HOH HOH . G 6 HOH A 17 717 655 HOH HOH . G 6 HOH A 18 718 658 HOH HOH . G 6 HOH A 19 719 681 HOH HOH . G 6 HOH A 20 720 587 HOH HOH . G 6 HOH A 21 721 556 HOH HOH . G 6 HOH A 22 722 667 HOH HOH . G 6 HOH A 23 723 588 HOH HOH . G 6 HOH A 24 724 561 HOH HOH . G 6 HOH A 25 725 694 HOH HOH . G 6 HOH A 26 726 562 HOH HOH . G 6 HOH A 27 727 576 HOH HOH . G 6 HOH A 28 728 609 HOH HOH . G 6 HOH A 29 729 572 HOH HOH . G 6 HOH A 30 730 585 HOH HOH . G 6 HOH A 31 731 566 HOH HOH . G 6 HOH A 32 732 618 HOH HOH . G 6 HOH A 33 733 629 HOH HOH . G 6 HOH A 34 734 642 HOH HOH . G 6 HOH A 35 735 614 HOH HOH . G 6 HOH A 36 736 680 HOH HOH . G 6 HOH A 37 737 621 HOH HOH . G 6 HOH A 38 738 687 HOH HOH . G 6 HOH A 39 739 679 HOH HOH . G 6 HOH A 40 740 568 HOH HOH . G 6 HOH A 41 741 682 HOH HOH . G 6 HOH A 42 742 616 HOH HOH . G 6 HOH A 43 743 619 HOH HOH . G 6 HOH A 44 744 665 HOH HOH . G 6 HOH A 45 745 676 HOH HOH . G 6 HOH A 46 746 599 HOH HOH . G 6 HOH A 47 747 560 HOH HOH . G 6 HOH A 48 748 558 HOH HOH . G 6 HOH A 49 749 652 HOH HOH . G 6 HOH A 50 750 662 HOH HOH . G 6 HOH A 51 751 701 HOH HOH . G 6 HOH A 52 752 570 HOH HOH . G 6 HOH A 53 753 706 HOH HOH . G 6 HOH A 54 754 678 HOH HOH . G 6 HOH A 55 755 668 HOH HOH . G 6 HOH A 56 756 579 HOH HOH . G 6 HOH A 57 757 583 HOH HOH . G 6 HOH A 58 758 671 HOH HOH . G 6 HOH A 59 759 603 HOH HOH . G 6 HOH A 60 760 677 HOH HOH . G 6 HOH A 61 761 580 HOH HOH . G 6 HOH A 62 762 628 HOH HOH . G 6 HOH A 63 763 686 HOH HOH . G 6 HOH A 64 764 600 HOH HOH . G 6 HOH A 65 765 574 HOH HOH . G 6 HOH A 66 766 601 HOH HOH . G 6 HOH A 67 767 607 HOH HOH . G 6 HOH A 68 768 571 HOH HOH . G 6 HOH A 69 769 612 HOH HOH . G 6 HOH A 70 770 636 HOH HOH . G 6 HOH A 71 771 643 HOH HOH . G 6 HOH A 72 772 673 HOH HOH . G 6 HOH A 73 773 644 HOH HOH . G 6 HOH A 74 774 670 HOH HOH . G 6 HOH A 75 775 598 HOH HOH . G 6 HOH A 76 776 559 HOH HOH . G 6 HOH A 77 777 605 HOH HOH . G 6 HOH A 78 778 696 HOH HOH . G 6 HOH A 79 779 661 HOH HOH . G 6 HOH A 80 780 622 HOH HOH . G 6 HOH A 81 781 575 HOH HOH . G 6 HOH A 82 782 647 HOH HOH . G 6 HOH A 83 783 693 HOH HOH . G 6 HOH A 84 784 700 HOH HOH . G 6 HOH A 85 785 634 HOH HOH . G 6 HOH A 86 786 578 HOH HOH . G 6 HOH A 87 787 615 HOH HOH . G 6 HOH A 88 788 595 HOH HOH . G 6 HOH A 89 789 657 HOH HOH . G 6 HOH A 90 790 604 HOH HOH . G 6 HOH A 91 791 564 HOH HOH . G 6 HOH A 92 792 577 HOH HOH . G 6 HOH A 93 793 638 HOH HOH . G 6 HOH A 94 794 567 HOH HOH . G 6 HOH A 95 795 689 HOH HOH . G 6 HOH A 96 796 592 HOH HOH . G 6 HOH A 97 797 573 HOH HOH . G 6 HOH A 98 798 591 HOH HOH . G 6 HOH A 99 799 626 HOH HOH . G 6 HOH A 100 800 606 HOH HOH . G 6 HOH A 101 801 617 HOH HOH . G 6 HOH A 102 802 648 HOH HOH . G 6 HOH A 103 803 623 HOH HOH . G 6 HOH A 104 804 630 HOH HOH . G 6 HOH A 105 805 675 HOH HOH . G 6 HOH A 106 806 653 HOH HOH . G 6 HOH A 107 807 627 HOH HOH . G 6 HOH A 108 808 602 HOH HOH . G 6 HOH A 109 809 704 HOH HOH . G 6 HOH A 110 810 654 HOH HOH . G 6 HOH A 111 811 639 HOH HOH . G 6 HOH A 112 812 624 HOH HOH . G 6 HOH A 113 813 597 HOH HOH . G 6 HOH A 114 814 620 HOH HOH . G 6 HOH A 115 815 631 HOH HOH . G 6 HOH A 116 816 649 HOH HOH . G 6 HOH A 117 817 641 HOH HOH . G 6 HOH A 118 818 565 HOH HOH . G 6 HOH A 119 819 582 HOH HOH . G 6 HOH A 120 820 685 HOH HOH . G 6 HOH A 121 821 688 HOH HOH . G 6 HOH A 122 822 697 HOH HOH . G 6 HOH A 123 823 669 HOH HOH . G 6 HOH A 124 824 656 HOH HOH . G 6 HOH A 125 825 610 HOH HOH . G 6 HOH A 126 826 613 HOH HOH . G 6 HOH A 127 827 666 HOH HOH . G 6 HOH A 128 828 650 HOH HOH . G 6 HOH A 129 829 557 HOH HOH . G 6 HOH A 130 830 608 HOH HOH . G 6 HOH A 131 831 625 HOH HOH . G 6 HOH A 132 832 589 HOH HOH . G 6 HOH A 133 833 705 HOH HOH . G 6 HOH A 134 834 646 HOH HOH . G 6 HOH A 135 835 635 HOH HOH . G 6 HOH A 136 836 692 HOH HOH . G 6 HOH A 137 837 640 HOH HOH . G 6 HOH A 138 838 691 HOH HOH . G 6 HOH A 139 839 698 HOH HOH . G 6 HOH A 140 840 660 HOH HOH . G 6 HOH A 141 841 581 HOH HOH . G 6 HOH A 142 842 699 HOH HOH . G 6 HOH A 143 843 586 HOH HOH . G 6 HOH A 144 844 703 HOH HOH . G 6 HOH A 145 845 674 HOH HOH . G 6 HOH A 146 846 645 HOH HOH . G 6 HOH A 147 847 584 HOH HOH . G 6 HOH A 148 848 611 HOH HOH . G 6 HOH A 149 849 709 HOH HOH . G 6 HOH A 150 850 712 HOH HOH . G 6 HOH A 151 851 672 HOH HOH . G 6 HOH A 152 852 632 HOH HOH . G 6 HOH A 153 853 708 HOH HOH . G 6 HOH A 154 854 711 HOH HOH . G 6 HOH A 155 855 633 HOH HOH . G 6 HOH A 156 856 593 HOH HOH . G 6 HOH A 157 857 659 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 42.053 89.213 37.409 1 40.62 ? PG ATP 601 A 1 HETATM 2 O O1G ATP . . . B 2 42.641 88.237 36.419 1 44.04 ? O1G ATP 601 A 1 HETATM 3 O O2G ATP . . . B 2 41.567 88.584 38.693 1 39.16 ? O2G ATP 601 A 1 HETATM 4 O O3G ATP . . . B 2 42.876 90.464 37.6 1 38.47 ? O3G ATP 601 A 1 HETATM 5 P PB ATP . . . B 2 40.4 91.018 35.886 1 39.18 ? PB ATP 601 A 1 HETATM 6 O O1B ATP . . . B 2 41.616 91.9 35.881 1 39.03 ? O1B ATP 601 A 1 HETATM 7 O O2B ATP . . . B 2 39.775 90.572 34.585 1 43.33 ? O2B ATP 601 A 1 HETATM 8 O O3B ATP . . . B 2 40.652 89.672 36.743 1 40.28 ? O3B ATP 601 A 1 HETATM 9 P PA ATP . . . B 2 38.71 93.144 36.796 1 41.32 ? PA ATP 601 A 1 HETATM 10 O O1A ATP . . . B 2 38.182 93.463 35.411 1 40.9 ? O1A ATP 601 A 1 HETATM 11 O O2A ATP . . . B 2 39.732 94.041 37.448 1 41.59 ? O2A ATP 601 A 1 HETATM 12 O O3A ATP . . . B 2 39.245 91.633 36.816 1 41.9 ? O3A ATP 601 A 1 HETATM 13 O O5' ATP . . . B 2 37.456 92.965 37.766 1 39.27 ? O5' ATP 601 A 1 HETATM 14 C C5' ATP . . . B 2 36.391 92.116 37.358 1 37.19 ? C5' ATP 601 A 1 HETATM 15 C C4' ATP . . . B 2 35.557 91.749 38.58 1 40.81 ? C4' ATP 601 A 1 HETATM 16 O O4' ATP . . . B 2 35.108 92.938 39.223 1 40.01 ? O4' ATP 601 A 1 HETATM 17 C C3' ATP . . . B 2 34.309 90.967 38.207 1 41.93 ? C3' ATP 601 A 1 HETATM 18 O O3' ATP . . . B 2 34.155 89.91 39.165 1 43.5 ? O3' ATP 601 A 1 HETATM 19 C C2' ATP . . . B 2 33.183 91.965 38.364 1 41.52 ? C2' ATP 601 A 1 HETATM 20 O O2' ATP . . . B 2 31.937 91.373 38.734 1 43.14 ? O2' ATP 601 A 1 HETATM 21 C C1' ATP . . . B 2 33.711 92.819 39.495 1 40.84 ? C1' ATP 601 A 1 HETATM 22 N N9 ATP . . . B 2 33.099 94.162 39.524 1 41.91 ? N9 ATP 601 A 1 HETATM 23 C C8 ATP . . . B 2 33.048 95.034 38.497 1 39.77 ? C8 ATP 601 A 1 HETATM 24 N N7 ATP . . . B 2 32.432 96.184 38.87 1 42.04 ? N7 ATP 601 A 1 HETATM 25 C C5 ATP . . . B 2 32.084 96.048 40.166 1 39.46 ? C5 ATP 601 A 1 HETATM 26 C C6 ATP . . . B 2 31.4 96.883 41.171 1 41.16 ? C6 ATP 601 A 1 HETATM 27 N N6 ATP . . . B 2 30.961 98.122 40.846 1 38.8 ? N6 ATP 601 A 1 HETATM 28 N N1 ATP . . . B 2 31.231 96.367 42.411 1 44.93 ? N1 ATP 601 A 1 HETATM 29 C C2 ATP . . . B 2 31.662 95.131 42.731 1 43.22 ? C2 ATP 601 A 1 HETATM 30 N N3 ATP . . . B 2 32.289 94.315 41.867 1 44.32 ? N3 ATP 601 A 1 HETATM 31 C C4 ATP . . . B 2 32.52 94.712 40.592 1 40.39 ? C4 ATP 601 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #