data_7L0G
#
_model_server_result.job_id            Cgg6y8PWePIa0IFGTRm0BA 
_model_server_result.datetime_utc      '2024-11-16 15:40:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l0g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":201}' 
#
_entry.id    7L0G 
#
_exptl.entry_id    7L0G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              539.246 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.22 
_cell.angle_gamma         90 
_cell.entry_id            7L0G 
_cell.length_a            71.834 
_cell.length_b            62.596 
_cell.length_c            123.404 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L0G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,I,J,Q,S 1 1 
B,D,K,L,R,T 2 1 
E,F,M,N,U,V 3 1 
G,H,O,P,W,X 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 K N N 
? 3 M N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 18 A SER 17 1_555 J MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 J MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc3 I O3G GSP . A GSP 201 1_555 J MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc4 I O2B GSP . A GSP 201 1_555 J MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc5 J MG MG . A MG 202 1_555 Q O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc6 J MG MG . A MG 202 1_555 Q O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc7 B OG SER 18 B SER 17 1_555 L MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc8 B OG1 THR 36 B THR 35 1_555 L MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc9 K O3G GSP . B GSP 201 1_555 L MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc10 K O2B GSP . B GSP 201 1_555 L MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc11 L MG MG . B MG 202 1_555 R O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.722 ? 
metalc ? metalc12 L MG MG . B MG 202 1_555 R O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc13 E OG SER 18 E SER 17 1_555 N MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc14 E OG1 THR 36 E THR 35 1_555 N MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc15 M O3G GSP . E GSP 201 1_555 N MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc16 M O2B GSP . E GSP 201 1_555 N MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc17 N MG MG . E MG 202 1_555 U O HOH . E HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? 
metalc ? metalc18 N MG MG . E MG 202 1_555 U O HOH . E HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc19 G OG SER 18 G SER 17 1_555 P MG MG . G MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc20 G OG1 THR 36 G THR 35 1_555 P MG MG . G MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc21 O O3G GSP . G GSP 201 1_555 P MG MG . G MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc22 O O2B GSP . G GSP 201 1_555 P MG MG . G MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
metalc ? metalc23 P MG MG . G MG 202 1_555 W O HOH . G HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc24 P MG MG . G MG 202 1_555 W O HOH . G HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3 S' 
_chem_comp.formula_weight    539.246 
_chem_comp.id                GSP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O3B GSP sing 129 n n 
PG S1G GSP doub 130 n n 
PG O2G GSP sing 131 n n 
PG O3G GSP sing 132 n n 
O3B PB GSP sing 133 n n 
O2G HOG2 GSP sing 134 n n 
O3G HOG3 GSP sing 135 n n 
PB O1B GSP doub 136 n n 
PB O2B GSP sing 137 n n 
PB O3A GSP sing 138 n n 
O2B HOB2 GSP sing 139 n n 
PA O1A GSP doub 140 n n 
PA O2A GSP sing 141 n n 
PA O3A GSP sing 142 n n 
PA O5' GSP sing 143 n n 
O2A HOA2 GSP sing 144 n n 
O5' C5' GSP sing 145 n n 
C5' C4' GSP sing 146 n n 
C5' "H5'1" GSP sing 147 n n 
C5' "H5'2" GSP sing 148 n n 
C4' O4' GSP sing 149 n n 
C4' C3' GSP sing 150 n n 
C4' H4' GSP sing 151 n n 
O4' C1' GSP sing 152 n n 
C3' O3' GSP sing 153 n n 
C3' C2' GSP sing 154 n n 
C3' H3' GSP sing 155 n n 
O3' HO3' GSP sing 156 n n 
C2' O2' GSP sing 157 n n 
C2' C1' GSP sing 158 n n 
C2' H2' GSP sing 159 n n 
O2' HO2' GSP sing 160 n n 
C1' N9 GSP sing 161 n n 
C1' H1' GSP sing 162 n n 
N9 C8 GSP sing 163 n y 
N9 C4 GSP sing 164 n y 
C8 N7 GSP doub 165 n y 
C8 H8 GSP sing 166 n n 
N7 C5 GSP sing 167 n y 
C5 C6 GSP sing 168 n n 
C5 C4 GSP doub 169 n y 
C6 O6 GSP doub 170 n n 
C6 N1 GSP sing 171 n n 
N1 C2 GSP sing 172 n n 
N1 HN1 GSP sing 173 n n 
C2 N2 GSP sing 174 n n 
C2 N3 GSP doub 175 n n 
N2 HN21 GSP sing 176 n n 
N2 HN22 GSP sing 177 n n 
N3 C4 GSP sing 178 n n 
#
_atom_sites.entry_id                     7L0G 
_atom_sites.fract_transf_matrix[1][1]    0.013921 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002761 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015975 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008261 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 GSP A 1 201 3 GSP GSP . 
J 4 MG A 1 202 3 MG MG . 
K 3 GSP B 1 201 2 GSP GSP . 
L 4 MG B 1 202 2 MG MG . 
M 3 GSP E 1 201 4 GSP GSP . 
N 4 MG E 1 202 4 MG MG . 
O 3 GSP G 1 201 1 GSP GSP . 
P 4 MG G 1 202 1 MG MG . 
Q 5 HOH A 1 301 6 HOH HOH . 
Q 5 HOH A 2 302 51 HOH HOH . 
Q 5 HOH A 3 303 52 HOH HOH . 
Q 5 HOH A 4 304 18 HOH HOH . 
Q 5 HOH A 5 305 37 HOH HOH . 
Q 5 HOH A 6 306 15 HOH HOH . 
Q 5 HOH A 7 307 32 HOH HOH . 
Q 5 HOH A 8 308 33 HOH HOH . 
Q 5 HOH A 9 309 43 HOH HOH . 
Q 5 HOH A 10 310 19 HOH HOH . 
R 5 HOH B 1 301 49 HOH HOH . 
R 5 HOH B 2 302 50 HOH HOH . 
R 5 HOH B 3 303 36 HOH HOH . 
R 5 HOH B 4 304 16 HOH HOH . 
R 5 HOH B 5 305 1 HOH HOH . 
R 5 HOH B 6 306 46 HOH HOH . 
S 5 HOH C 1 101 40 HOH HOH . 
S 5 HOH C 2 102 12 HOH HOH . 
S 5 HOH C 3 103 35 HOH HOH . 
S 5 HOH C 4 104 11 HOH HOH . 
S 5 HOH C 5 105 26 HOH HOH . 
S 5 HOH C 6 106 25 HOH HOH . 
T 5 HOH D 1 101 23 HOH HOH . 
T 5 HOH D 2 102 27 HOH HOH . 
T 5 HOH D 3 103 38 HOH HOH . 
T 5 HOH D 4 104 10 HOH HOH . 
T 5 HOH D 5 105 9 HOH HOH . 
T 5 HOH D 6 106 3 HOH HOH . 
T 5 HOH D 7 107 20 HOH HOH . 
U 5 HOH E 1 301 2 HOH HOH . 
U 5 HOH E 2 302 53 HOH HOH . 
U 5 HOH E 3 303 54 HOH HOH . 
U 5 HOH E 4 304 7 HOH HOH . 
U 5 HOH E 5 305 17 HOH HOH . 
V 5 HOH F 1 101 41 HOH HOH . 
V 5 HOH F 2 102 30 HOH HOH . 
V 5 HOH F 3 103 28 HOH HOH . 
V 5 HOH F 4 104 21 HOH HOH . 
W 5 HOH G 1 301 14 HOH HOH . 
W 5 HOH G 2 302 48 HOH HOH . 
W 5 HOH G 3 303 8 HOH HOH . 
W 5 HOH G 4 304 42 HOH HOH . 
W 5 HOH G 5 305 4 HOH HOH . 
W 5 HOH G 6 306 47 HOH HOH . 
W 5 HOH G 7 307 45 HOH HOH . 
W 5 HOH G 8 308 44 HOH HOH . 
W 5 HOH G 9 309 13 HOH HOH . 
X 5 HOH H 1 101 5 HOH HOH . 
X 5 HOH H 2 102 31 HOH HOH . 
X 5 HOH H 3 103 22 HOH HOH . 
X 5 HOH H 4 104 34 HOH HOH . 
X 5 HOH H 5 105 24 HOH HOH . 
X 5 HOH H 6 106 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GSP . . . M 3 -28.983 15.202 42.973 1 42.84 ? PG GSP 201 E 1 
HETATM 2 O O3B GSP . . . M 3 -27.513 15.856 42.645 1 40.44 ? O3B GSP 201 E 1 
HETATM 3 S S1G GSP . . . M 3 -30.224 16.729 43.104 1 40.01 ? S1G GSP 201 E 1 
HETATM 4 O O2G GSP . . . M 3 -28.84 14.34 44.216 1 32.9 ? O2G GSP 201 E 1 
HETATM 5 O O3G GSP . . . M 3 -29.262 14.278 41.796 1 38.32 ? O3G GSP 201 E 1 
HETATM 6 P PB GSP . . . M 3 -26.106 15.157 42.319 1 39.56 ? PB GSP 201 E 1 
HETATM 7 O O1B GSP . . . M 3 -25.402 14.935 43.626 1 36.97 ? O1B GSP 201 E 1 
HETATM 8 O O2B GSP . . . M 3 -26.357 13.999 41.411 1 37.72 ? O2B GSP 201 E 1 
HETATM 9 P PA GSP . . . M 3 -24.831 16.195 39.973 1 40.49 ? PA GSP 201 E 1 
HETATM 10 O O1A GSP . . . M 3 -26.034 16.371 39.124 1 40.48 ? O1A GSP 201 E 1 
HETATM 11 O O2A GSP . . . M 3 -24.01 14.958 39.819 1 47.47 ? O2A GSP 201 E 1 
HETATM 12 O O3A GSP . . . M 3 -25.327 16.272 41.486 1 40.08 ? O3A GSP 201 E 1 
HETATM 13 O O5' GSP . . . M 3 -23.898 17.479 39.821 1 39.92 ? O5' GSP 201 E 1 
HETATM 14 C C5' GSP . . . M 3 -24.517 18.731 40.172 1 38.55 ? C5' GSP 201 E 1 
HETATM 15 C C4' GSP . . . M 3 -23.879 19.869 39.419 1 39.62 ? C4' GSP 201 E 1 
HETATM 16 O O4' GSP . . . M 3 -22.519 20.056 39.87 1 39.95 ? O4' GSP 201 E 1 
HETATM 17 C C3' GSP . . . M 3 -23.78 19.738 37.895 1 42.18 ? C3' GSP 201 E 1 
HETATM 18 O O3' GSP . . . M 3 -23.813 21.02 37.275 1 47.44 ? O3' GSP 201 E 1 
HETATM 19 C C2' GSP . . . M 3 -22.398 19.124 37.709 1 43.26 ? C2' GSP 201 E 1 
HETATM 20 O O2' GSP . . . M 3 -21.907 19.4 36.417 1 41.15 ? O2' GSP 201 E 1 
HETATM 21 C C1' GSP . . . M 3 -21.618 19.844 38.808 1 42.37 ? C1' GSP 201 E 1 
HETATM 22 N N9 GSP . . . M 3 -20.475 19.088 39.316 1 40.64 ? N9 GSP 201 E 1 
HETATM 23 C C8 GSP . . . M 3 -20.441 17.781 39.734 1 40.75 ? C8 GSP 201 E 1 
HETATM 24 N N7 GSP . . . M 3 -19.252 17.389 40.137 1 41.14 ? N7 GSP 201 E 1 
HETATM 25 C C5 GSP . . . M 3 -18.454 18.509 39.955 1 42.27 ? C5 GSP 201 E 1 
HETATM 26 C C6 GSP . . . M 3 -17.074 18.692 40.197 1 42.94 ? C6 GSP 201 E 1 
HETATM 27 O O6 GSP . . . M 3 -16.249 17.874 40.633 1 40.41 ? O6 GSP 201 E 1 
HETATM 28 N N1 GSP . . . M 3 -16.681 19.991 39.865 1 43.6 ? N1 GSP 201 E 1 
HETATM 29 C C2 GSP . . . M 3 -17.49 20.978 39.365 1 39.78 ? C2 GSP 201 E 1 
HETATM 30 N N2 GSP . . . M 3 -16.926 22.168 39.122 1 38.64 ? N2 GSP 201 E 1 
HETATM 31 N N3 GSP . . . M 3 -18.782 20.806 39.136 1 41.82 ? N3 GSP 201 E 1 
HETATM 32 C C4 GSP . . . M 3 -19.193 19.559 39.456 1 41.42 ? C4 GSP 201 E 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#