data_7L15 # _model_server_result.job_id 2ySXRWIx7n7UtqU34jjLUQ _model_server_result.datetime_utc '2024-11-12 20:28:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7L15 # _exptl.entry_id 7L15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L15 _cell.length_a 56.396 _cell.length_b 82.705 _cell.length_c 108.439 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 323 NAG 3 n C NAG 2 C 2 NAG B 324 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 159 1_555 A SG CYS 105 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 151 A CYS 274 1_555 A SG CYS 203 A CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 97 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? covale ? covale1 A ND2 ASN 66 A ASN 189 1_555 D C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B ND2 ASN 200 B ASN 200 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7L15 _atom_sites.fract_transf_matrix[1][1] 0.017732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 401 441 NAG NAG . E 5 HOH A 1 501 3 HOH HOH . E 5 HOH A 2 502 90 HOH HOH . E 5 HOH A 3 503 61 HOH HOH . E 5 HOH A 4 504 79 HOH HOH . E 5 HOH A 5 505 11 HOH HOH . E 5 HOH A 6 506 76 HOH HOH . E 5 HOH A 7 507 17 HOH HOH . E 5 HOH A 8 508 83 HOH HOH . E 5 HOH A 9 509 96 HOH HOH . E 5 HOH A 10 510 65 HOH HOH . E 5 HOH A 11 511 45 HOH HOH . E 5 HOH A 12 512 69 HOH HOH . E 5 HOH A 13 513 32 HOH HOH . E 5 HOH A 14 514 35 HOH HOH . E 5 HOH A 15 515 25 HOH HOH . E 5 HOH A 16 516 43 HOH HOH . E 5 HOH A 17 517 57 HOH HOH . E 5 HOH A 18 518 73 HOH HOH . E 5 HOH A 19 519 53 HOH HOH . E 5 HOH A 20 520 71 HOH HOH . E 5 HOH A 21 521 88 HOH HOH . E 5 HOH A 22 522 62 HOH HOH . E 5 HOH A 23 523 5 HOH HOH . E 5 HOH A 24 524 20 HOH HOH . E 5 HOH A 25 525 16 HOH HOH . E 5 HOH A 26 526 15 HOH HOH . E 5 HOH A 27 527 75 HOH HOH . E 5 HOH A 28 528 95 HOH HOH . E 5 HOH A 29 529 30 HOH HOH . E 5 HOH A 30 530 1 HOH HOH . E 5 HOH A 31 531 33 HOH HOH . E 5 HOH A 32 532 21 HOH HOH . E 5 HOH A 33 533 14 HOH HOH . E 5 HOH A 34 534 40 HOH HOH . E 5 HOH A 35 535 60 HOH HOH . E 5 HOH A 36 536 93 HOH HOH . E 5 HOH A 37 537 56 HOH HOH . E 5 HOH A 38 538 36 HOH HOH . E 5 HOH A 39 539 52 HOH HOH . E 5 HOH A 40 540 4 HOH HOH . E 5 HOH A 41 541 28 HOH HOH . E 5 HOH A 42 542 92 HOH HOH . E 5 HOH A 43 543 42 HOH HOH . E 5 HOH A 44 544 6 HOH HOH . E 5 HOH A 45 545 55 HOH HOH . E 5 HOH A 46 546 101 HOH HOH . E 5 HOH A 47 547 29 HOH HOH . E 5 HOH A 48 548 27 HOH HOH . E 5 HOH A 49 549 86 HOH HOH . E 5 HOH A 50 550 38 HOH HOH . E 5 HOH A 51 551 24 HOH HOH . E 5 HOH A 52 552 64 HOH HOH . E 5 HOH A 53 553 10 HOH HOH . E 5 HOH A 54 554 85 HOH HOH . E 5 HOH A 55 555 82 HOH HOH . E 5 HOH A 56 556 94 HOH HOH . E 5 HOH A 57 557 54 HOH HOH . E 5 HOH A 58 558 100 HOH HOH . F 5 HOH B 1 301 31 HOH HOH . F 5 HOH B 2 302 80 HOH HOH . F 5 HOH B 3 303 58 HOH HOH . F 5 HOH B 4 304 77 HOH HOH . F 5 HOH B 5 305 44 HOH HOH . F 5 HOH B 6 306 2 HOH HOH . F 5 HOH B 7 307 91 HOH HOH . F 5 HOH B 8 308 13 HOH HOH . F 5 HOH B 9 309 22 HOH HOH . F 5 HOH B 10 310 7 HOH HOH . F 5 HOH B 11 311 39 HOH HOH . F 5 HOH B 12 312 8 HOH HOH . F 5 HOH B 13 313 18 HOH HOH . F 5 HOH B 14 314 72 HOH HOH . F 5 HOH B 15 315 50 HOH HOH . F 5 HOH B 16 316 49 HOH HOH . F 5 HOH B 17 317 12 HOH HOH . F 5 HOH B 18 318 59 HOH HOH . F 5 HOH B 19 319 47 HOH HOH . F 5 HOH B 20 320 46 HOH HOH . F 5 HOH B 21 321 78 HOH HOH . F 5 HOH B 22 322 23 HOH HOH . F 5 HOH B 23 323 89 HOH HOH . F 5 HOH B 24 324 70 HOH HOH . F 5 HOH B 25 325 34 HOH HOH . F 5 HOH B 26 326 41 HOH HOH . F 5 HOH B 27 327 51 HOH HOH . F 5 HOH B 28 328 19 HOH HOH . F 5 HOH B 29 329 9 HOH HOH . F 5 HOH B 30 330 37 HOH HOH . F 5 HOH B 31 331 26 HOH HOH . F 5 HOH B 32 332 68 HOH HOH . F 5 HOH B 33 333 67 HOH HOH . F 5 HOH B 34 334 84 HOH HOH . F 5 HOH B 35 335 48 HOH HOH . F 5 HOH B 36 336 81 HOH HOH . F 5 HOH B 37 337 74 HOH HOH . F 5 HOH B 38 338 63 HOH HOH . F 5 HOH B 39 339 99 HOH HOH . F 5 HOH B 40 340 97 HOH HOH . F 5 HOH B 41 341 87 HOH HOH . F 5 HOH B 42 342 66 HOH HOH . F 5 HOH B 43 343 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -1.908 3.346 -17.028 1 64.72 ? C1 NAG 401 A 1 HETATM 2 C C2 NAG . . . D 4 -1.95 4.819 -17.503 1 80.73 ? C2 NAG 401 A 1 HETATM 3 C C3 NAG . . . D 4 -0.735 5.592 -16.985 1 83.85 ? C3 NAG 401 A 1 HETATM 4 C C4 NAG . . . D 4 -0.617 5.43 -15.477 1 86.49 ? C4 NAG 401 A 1 HETATM 5 C C5 NAG . . . D 4 -0.522 3.943 -15.158 1 82.09 ? C5 NAG 401 A 1 HETATM 6 C C6 NAG . . . D 4 -0.343 3.636 -13.689 1 82.41 ? C6 NAG 401 A 1 HETATM 7 C C7 NAG . . . D 4 -3.145 5.17 -19.621 1 89.55 ? C7 NAG 401 A 1 HETATM 8 C C8 NAG . . . D 4 -3.044 5.162 -21.117 1 87.39 ? C8 NAG 401 A 1 HETATM 9 N N2 NAG . . . D 4 -2.021 4.883 -18.955 1 89.94 ? N2 NAG 401 A 1 HETATM 10 O O3 NAG . . . D 4 -0.852 6.972 -17.311 1 88.7 ? O3 NAG 401 A 1 HETATM 11 O O4 NAG . . . D 4 0.517 6.133 -14.98 1 93.94 ? O4 NAG 401 A 1 HETATM 12 O O5 NAG . . . D 4 -1.73 3.3 -15.591 1 71.91 ? O5 NAG 401 A 1 HETATM 13 O O6 NAG . . . D 4 -1.443 4.087 -12.911 1 83.99 ? O6 NAG 401 A 1 HETATM 14 O O7 NAG . . . D 4 -4.193 5.432 -19.041 1 90.92 ? O7 NAG 401 A 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #