data_7L16
#
_model_server_result.job_id            voXnE5uaQHAxK1nMbXFf3w 
_model_server_result.datetime_utc      '2024-11-04 22:48:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l16 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    7L16 
#
_exptl.entry_id    7L16 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'dodecyl 6-O-alpha-D-galactopyranosyl-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7L16 
_cell.length_a            127.372 
_cell.length_b            127.372 
_cell.length_c            103.905 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L16 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'dodecyl 6-O-alpha-D-galactopyranosyl-beta-D-glucopyranoside' 
_chem_comp.type              saccharide 
_chem_comp.pdbx_synonyms     'DDMB;dodecyl melibioside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C28 C27 LMO sing 192 n n 
C28 C29 LMO sing 193 n n 
C32 C31 LMO sing 194 n n 
C32 C33 LMO sing 195 n n 
C26 C27 LMO sing 196 n n 
C26 C25 LMO sing 197 n n 
C31 C30 LMO sing 198 n n 
C29 C30 LMO sing 199 n n 
C24 C25 LMO sing 200 n n 
C24 C23 LMO sing 201 n n 
C33 C34 LMO sing 202 n n 
C23 O22 LMO sing 203 n n 
O21 C19 LMO sing 204 n n 
O22 C18 LMO sing 205 n n 
C18 C19 LMO sing 206 n n 
C18 O15 LMO sing 207 n n 
C19 C17 LMO sing 208 n n 
C17 O35 LMO sing 209 n n 
C17 C16 LMO sing 210 n n 
O15 C14 LMO sing 211 n n 
C16 C14 LMO sing 212 n n 
C16 O20 LMO sing 213 n n 
C14 C13 LMO sing 214 n n 
O10 C03 LMO sing 215 n n 
C04 C03 LMO sing 216 n n 
C04 O05 LMO sing 217 n n 
C04 O08 LMO sing 218 n n 
C03 C02 LMO sing 219 n n 
C13 O08 LMO sing 220 n n 
O05 C06 LMO sing 221 n n 
O07 C01 LMO sing 222 n n 
C02 O09 LMO sing 223 n n 
C02 C01 LMO sing 224 n n 
C06 C11 LMO sing 225 n n 
C06 C01 LMO sing 226 n n 
C11 O12 LMO sing 227 n n 
C13 H131 LMO sing 228 n n 
C13 H132 LMO sing 229 n n 
C17 H171 LMO sing 230 n n 
C24 H241 LMO sing 231 n n 
C24 H242 LMO sing 232 n n 
C26 H262 LMO sing 233 n n 
C26 H261 LMO sing 234 n n 
C28 H281 LMO sing 235 n n 
C28 H282 LMO sing 236 n n 
C01 H011 LMO sing 237 n n 
C02 H021 LMO sing 238 n n 
C03 H031 LMO sing 239 n n 
C04 H041 LMO sing 240 n n 
C06 H061 LMO sing 241 n n 
C11 H111 LMO sing 242 n n 
C11 H112 LMO sing 243 n n 
C14 H141 LMO sing 244 n n 
C16 H161 LMO sing 245 n n 
C18 H181 LMO sing 246 n n 
C19 H191 LMO sing 247 n n 
C23 H232 LMO sing 248 n n 
C23 H231 LMO sing 249 n n 
C25 H252 LMO sing 250 n n 
C25 H251 LMO sing 251 n n 
C27 H271 LMO sing 252 n n 
C27 H272 LMO sing 253 n n 
C29 H291 LMO sing 254 n n 
C29 H292 LMO sing 255 n n 
C30 H302 LMO sing 256 n n 
C30 H301 LMO sing 257 n n 
C31 H312 LMO sing 258 n n 
C31 H311 LMO sing 259 n n 
C32 H322 LMO sing 260 n n 
C32 H321 LMO sing 261 n n 
C33 H331 LMO sing 262 n n 
C33 H332 LMO sing 263 n n 
C34 H343 LMO sing 264 n n 
C34 H342 LMO sing 265 n n 
C34 H341 LMO sing 266 n n 
O07 H071 LMO sing 267 n n 
O09 H091 LMO sing 268 n n 
O10 H101 LMO sing 269 n n 
O12 H121 LMO sing 270 n n 
O20 H201 LMO sing 271 n n 
O21 H211 LMO sing 272 n n 
O35 H351 LMO sing 273 n n 
#
_atom_sites.entry_id                     7L16 
_atom_sites.fract_transf_matrix[1][1]    0.007851 
_atom_sites.fract_transf_matrix[1][2]    0.004533 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009624 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           LMO 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      501 
_pdbx_nonpoly_scheme.auth_seq_num     501 
_pdbx_nonpoly_scheme.pdb_mon_id       LMO 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 LMO . . . B 2 -27.572 47.862 -4.402 1 117.04 ? C13 LMO 501 A 1 
HETATM 2 C C17 LMO . . . B 2 -26.403 45.382 -7.201 1 127.71 ? C17 LMO 501 A 1 
HETATM 3 C C24 LMO . . . B 2 -28.439 48.513 -10.594 1 125.12 ? C24 LMO 501 A 1 
HETATM 4 C C26 LMO . . . B 2 -30.377 46.899 -11.33 0 120.76 ? C26 LMO 501 A 1 
HETATM 5 C C28 LMO . . . B 2 -30.157 44.346 -11.878 0.24 124.65 ? C28 LMO 501 A 1 
HETATM 6 C C14 LMO . . . B 2 -27.754 47.036 -5.743 1 122.21 ? C14 LMO 501 A 1 
HETATM 7 C C16 LMO . . . B 2 -26.82 45.788 -5.756 1 122.6 ? C16 LMO 501 A 1 
HETATM 8 C C18 LMO . . . B 2 -27.118 47.615 -8.051 1 121.43 ? C18 LMO 501 A 1 
HETATM 9 C C19 LMO . . . B 2 -25.929 46.628 -7.965 1 123.59 ? C19 LMO 501 A 1 
HETATM 10 C C23 LMO . . . B 2 -27.885 49.422 -9.461 1 123.99 ? C23 LMO 501 A 1 
HETATM 11 C C25 LMO . . . B 2 -29.904 48.023 -10.378 1 122.09 ? C25 LMO 501 A 1 
HETATM 12 C C27 LMO . . . B 2 -29.479 45.627 -11.328 1 122.51 ? C27 LMO 501 A 1 
HETATM 13 C C29 LMO . . . B 2 -30.506 43.29 -10.8 1 123.2 ? C29 LMO 501 A 1 
HETATM 14 C C30 LMO . . . B 2 -29.293 42.422 -10.361 1 131.23 ? C30 LMO 501 A 1 
HETATM 15 C C31 LMO . . . B 2 -29.008 41.174 -11.242 1 132.28 ? C31 LMO 501 A 1 
HETATM 16 C C32 LMO . . . B 2 -30.252 40.325 -11.597 1 137.67 ? C32 LMO 501 A 1 
HETATM 17 C C33 LMO . . . B 2 -31.14 39.99 -10.38 0 146.3 ? C33 LMO 501 A 1 
HETATM 18 C C34 LMO . . . B 2 -30.358 39.452 -9.186 1 124.47 ? C34 LMO 501 A 1 
HETATM 19 O O08 LMO . . . B 2 -26.18 47.916 -4.037 1 113.73 ? O08 LMO 501 A 1 
HETATM 20 O O15 LMO . . . B 2 -27.546 47.987 -6.775 1 123.1 ? O15 LMO 501 A 1 
HETATM 21 O O20 LMO . . . B 2 -27.547 44.734 -5.19 1 120.91 ? O20 LMO 501 A 1 
HETATM 22 O O21 LMO . . . B 2 -25.572 46.265 -9.263 1 119.28 ? O21 LMO 501 A 1 
HETATM 23 O O22 LMO . . . B 2 -26.788 48.782 -8.78 1 118.14 ? O22 LMO 501 A 1 
HETATM 24 O O35 LMO . . . B 2 -25.3 44.526 -7.074 1 119.14 ? O35 LMO 501 A 1 
HETATM 25 C C04 LMO . . . B 2 -25.356 48.821 -4.755 1 110.6 ? C04 LMO 501 A 1 
HETATM 26 C C03 LMO . . . B 2 -23.837 48.492 -4.591 1 108.2 ? C03 LMO 501 A 1 
HETATM 27 C C02 LMO . . . B 2 -23.528 48.565 -3.07 1 104.52 ? C02 LMO 501 A 1 
HETATM 28 C C01 LMO . . . B 2 -23.816 49.996 -2.549 1 100.39 ? C01 LMO 501 A 1 
HETATM 29 C C06 LMO . . . B 2 -25.274 50.403 -2.899 1 102.67 ? C06 LMO 501 A 1 
HETATM 30 C C11 LMO . . . B 2 -25.443 51.938 -2.771 1 101.75 ? C11 LMO 501 A 1 
HETATM 31 O O10 LMO . . . B 2 -23.677 47.182 -5.037 1 109.97 ? O10 LMO 501 A 1 
HETATM 32 O O09 LMO . . . B 2 -22.163 48.3 -2.944 1 98.83 ? O09 LMO 501 A 1 
HETATM 33 O O07 LMO . . . B 2 -22.898 50.847 -3.174 1 98.03 ? O07 LMO 501 A 1 
HETATM 34 O O05 LMO . . . B 2 -25.66 50.095 -4.226 1 108.19 ? O05 LMO 501 A 1 
HETATM 35 O O12 LMO . . . B 2 -26.629 52.105 -2.036 1 99.73 ? O12 LMO 501 A 1 
HETATM 36 H H131 LMO . . . B 2 -28.114 47.44 -3.717 1 143.01 ? H131 LMO 501 A 1 
HETATM 37 H H132 LMO . . . B 2 -27.948 48.745 -4.543 1 143.01 ? H132 LMO 501 A 1 
HETATM 38 H H171 LMO . . . B 2 -27.155 44.986 -7.669 1 155.81 ? H171 LMO 501 A 1 
HETATM 39 H H241 LMO . . . B 2 -28.374 48.984 -11.44 1 152.7 ? H241 LMO 501 A 1 
HETATM 40 H H242 LMO . . . B 2 -27.852 47.749 -10.704 1 152.7 ? H242 LMO 501 A 1 
HETATM 41 H H262 LMO . . . B 2 -31.288 46.657 -11.1 1 147.47 ? H262 LMO 501 A 1 
HETATM 42 H H261 LMO . . . B 2 -30.437 47.256 -12.23 1 147.47 ? H261 LMO 501 A 1 
HETATM 43 H H281 LMO . . . B 2 -29.589 43.938 -12.55 1 152.14 ? H281 LMO 501 A 1 
HETATM 44 H H282 LMO . . . B 2 -30.964 44.584 -12.361 1 152.14 ? H282 LMO 501 A 1 
HETATM 45 H H141 LMO . . . B 2 -28.656 46.692 -5.836 1 149.21 ? H141 LMO 501 A 1 
HETATM 46 H H161 LMO . . . B 2 -26.015 46.034 -5.274 1 149.68 ? H161 LMO 501 A 1 
HETATM 47 H H181 LMO . . . B 2 -27.883 47.153 -8.427 1 148.28 ? H181 LMO 501 A 1 
HETATM 48 H H191 LMO . . . B 2 -25.178 47.042 -7.51 1 150.88 ? H191 LMO 501 A 1 
HETATM 49 H H232 LMO . . . B 2 -28.601 49.623 -8.838 1 151.35 ? H232 LMO 501 A 1 
HETATM 50 H H231 LMO . . . B 2 -27.603 50.267 -9.843 1 151.35 ? H231 LMO 501 A 1 
HETATM 51 H H252 LMO . . . B 2 -30.02 47.722 -9.464 1 149.08 ? H252 LMO 501 A 1 
HETATM 52 H H251 LMO . . . B 2 -30.517 48.771 -10.456 1 149.08 ? H251 LMO 501 A 1 
HETATM 53 H H271 LMO . . . B 2 -28.67 45.803 -11.833 1 149.58 ? H271 LMO 501 A 1 
HETATM 54 H H272 LMO . . . B 2 -29.16 45.459 -10.427 1 149.58 ? H272 LMO 501 A 1 
HETATM 55 H H291 LMO . . . B 2 -31.214 42.709 -11.12 1 150.4 ? H291 LMO 501 A 1 
HETATM 56 H H292 LMO . . . B 2 -30.887 43.723 -10.02 1 150.4 ? H292 LMO 501 A 1 
HETATM 57 H H302 LMO . . . B 2 -28.492 42.969 -10.331 1 160.03 ? H302 LMO 501 A 1 
HETATM 58 H H301 LMO . . . B 2 -29.412 42.132 -9.443 1 160.03 ? H301 LMO 501 A 1 
HETATM 59 H H312 LMO . . . B 2 -28.571 41.443 -12.065 1 161.29 ? H312 LMO 501 A 1 
HETATM 60 H H311 LMO . . . B 2 -28.357 40.602 -10.805 1 161.29 ? H311 LMO 501 A 1 
HETATM 61 H H322 LMO . . . B 2 -29.983 39.499 -12.03 1 167.76 ? H322 LMO 501 A 1 
HETATM 62 H H321 LMO . . . B 2 -30.789 40.779 -12.265 1 167.76 ? H321 LMO 501 A 1 
HETATM 63 H H331 LMO . . . B 2 -31.822 39.345 -10.624 1 178.12 ? H331 LMO 501 A 1 
HETATM 64 H H332 LMO . . . B 2 -31.642 40.771 -10.1 1 178.12 ? H332 LMO 501 A 1 
HETATM 65 H H343 LMO . . . B 2 -29.706 38.785 -9.452 1 151.93 ? H343 LMO 501 A 1 
HETATM 66 H H342 LMO . . . B 2 -30.939 39.035 -8.531 1 151.93 ? H342 LMO 501 A 1 
HETATM 67 H H341 LMO . . . B 2 -29.872 40.154 -8.726 1 151.93 ? H341 LMO 501 A 1 
HETATM 68 H H201 LMO . . . B 2 -28.164 44.538 -5.745 1 147.65 ? H201 LMO 501 A 1 
HETATM 69 H H211 LMO . . . B 2 -25.892 46.862 -9.776 1 145.69 ? H211 LMO 501 A 1 
HETATM 70 H H351 LMO . . . B 2 -25.597 43.782 -6.793 1 145.53 ? H351 LMO 501 A 1 
HETATM 71 H H041 LMO . . . B 2 -25.604 48.891 -5.69 1 135.28 ? H041 LMO 501 A 1 
HETATM 72 H H031 LMO . . . B 2 -23.275 49.107 -5.088 1 132.4 ? H031 LMO 501 A 1 
HETATM 73 H H021 LMO . . . B 2 -24.069 47.915 -2.595 1 127.98 ? H021 LMO 501 A 1 
HETATM 74 H H011 LMO . . . B 2 -23.726 50.038 -1.584 1 123.03 ? H011 LMO 501 A 1 
HETATM 75 H H061 LMO . . . B 2 -25.864 49.953 -2.274 1 125.77 ? H061 LMO 501 A 1 
HETATM 76 H H111 LMO . . . B 2 -25.484 52.353 -3.647 1 124.66 ? H111 LMO 501 A 1 
HETATM 77 H H112 LMO . . . B 2 -24.673 52.333 -2.334 1 124.66 ? H112 LMO 501 A 1 
HETATM 78 H H101 LMO . . . B 2 -23.134 46.804 -4.503 1 134.52 ? H101 LMO 501 A 1 
HETATM 79 H H091 LMO . . . B 2 -22.054 47.881 -2.213 1 121.16 ? H091 LMO 501 A 1 
HETATM 80 H H071 LMO . . . B 2 -22.456 51.23 -2.558 1 120.19 ? H071 LMO 501 A 1 
HETATM 81 H H121 LMO . . . B 2 -27.023 52.791 -2.347 1 122.23 ? H121 LMO 501 A 1 
#
_model_server_stats.io_time_ms              85 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           81 
#