data_7L17 # _model_server_result.job_id qWIO6xI-7oPCgANVw2kt8w _model_server_result.datetime_utc '2024-11-08 18:19:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7L17 # _exptl.entry_id 7L17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.249 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-nitrophenyl alpha-D-galactopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7L17 _cell.length_a 126.364 _cell.length_b 126.364 _cell.length_c 104.334 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H15 N O8' _chem_comp.formula_weight 301.249 _chem_comp.id 9PG _chem_comp.mon_nstd_flag n _chem_comp.name '4-nitrophenyl alpha-D-galactopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '4-nitrophenyl alpha-D-galactoside;4-nitrophenyl D-galactoside;4-nitrophenyl galactoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C3 9PG sing 1 n n O2 C2 9PG sing 2 n n C3 C2 9PG sing 3 n n C3 C4 9PG sing 4 n n C2 C1 9PG sing 5 n n C4 O4 9PG sing 6 n n C4 C5 9PG sing 7 n n O1 C1 9PG sing 8 n n O1 C12 9PG sing 9 n n C1 O5 9PG sing 10 n n C11 C12 9PG doub 11 n y C11 C10 9PG sing 12 n y C5 O5 9PG sing 13 n n C5 C6 9PG sing 14 n n C12 C13 9PG sing 15 n y C10 C9 9PG doub 16 n y C13 C14 9PG doub 17 n y O6 C6 9PG sing 18 n n C9 C14 9PG sing 19 n y C9 N 9PG sing 20 n n N O7 9PG doub 21 n n N O8 9PG sing 22 n n C6 H61 9PG sing 23 n n C6 H62 9PG sing 24 n n C5 H5 9PG sing 25 n n C4 H4 9PG sing 26 n n C3 H3 9PG sing 27 n n C2 H2 9PG sing 28 n n C1 H1 9PG sing 29 n n C14 H8 9PG sing 30 n n C13 H9 9PG sing 31 n n C11 H10 9PG sing 32 n n C10 H11 9PG sing 33 n n O2 HO2 9PG sing 34 n n O3 HO3 9PG sing 35 n n O4 HO4 9PG sing 36 n n O6 HO6 9PG sing 37 n n # _atom_sites.entry_id 7L17 _atom_sites.fract_transf_matrix[1][1] 0.007914 _atom_sites.fract_transf_matrix[1][2] 0.004569 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009138 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 9PG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id 9PG _pdbx_nonpoly_scheme.auth_mon_id 9PG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 9PG . . . B 2 -25.733 51.77 -2.325 1 78.55 ? C6 9PG 501 A 1 HETATM 2 C C5 9PG . . . B 2 -25.331 50.42 -2.73 1 82.38 ? C5 9PG 501 A 1 HETATM 3 C C4 9PG . . . B 2 -23.879 50.151 -2.324 1 82.46 ? C4 9PG 501 A 1 HETATM 4 C C3 9PG . . . B 2 -23.415 48.837 -2.827 1 86.52 ? C3 9PG 501 A 1 HETATM 5 C C2 9PG . . . B 2 -23.62 48.701 -4.311 1 83.91 ? C2 9PG 501 A 1 HETATM 6 C C1 9PG . . . B 2 -25.086 48.96 -4.694 1 84.5 ? C1 9PG 501 A 1 HETATM 7 O O8 9PG . . . B 2 -30.128 46.664 -8.845 1 130.26 ? O8 9PG 501 A 1 HETATM 8 N N 9PG . . . B 2 -30.152 46.391 -7.497 1 114.95 ? N 9PG 501 A 1 HETATM 9 O O7 9PG . . . B 2 -31.057 45.812 -7.038 1 112.92 ? O7 9PG 501 A 1 HETATM 10 C C9 9PG . . . B 2 -29.037 46.818 -6.617 1 108.94 ? C9 9PG 501 A 1 HETATM 11 C C14 9PG . . . B 2 -27.898 46.023 -6.499 1 111.92 ? C14 9PG 501 A 1 HETATM 12 C C13 9PG . . . B 2 -26.854 46.415 -5.674 1 103.82 ? C13 9PG 501 A 1 HETATM 13 C C12 9PG . . . B 2 -26.937 47.599 -4.965 1 99.86 ? C12 9PG 501 A 1 HETATM 14 C C11 9PG . . . B 2 -28.084 48.398 -5.079 1 106.31 ? C11 9PG 501 A 1 HETATM 15 C C10 9PG . . . B 2 -29.123 48.009 -5.899 1 107.65 ? C10 9PG 501 A 1 HETATM 16 O O1 9PG . . . B 2 -25.867 47.994 -4.116 1 93.14 ? O1 9PG 501 A 1 HETATM 17 O O2 9PG . . . B 2 -23.246 47.394 -4.726 1 84.18 ? O2 9PG 501 A 1 HETATM 18 O O3 9PG . . . B 2 -21.99 48.691 -2.518 1 81.56 ? O3 9PG 501 A 1 HETATM 19 O O4 9PG . . . B 2 -23.02 51.176 -2.877 1 96.97 ? O4 9PG 501 A 1 HETATM 20 O O5 9PG . . . B 2 -25.518 50.277 -4.216 1 93.12 ? O5 9PG 501 A 1 HETATM 21 O O6 9PG . . . B 2 -26.205 51.737 -1.038 1 89.46 ? O6 9PG 501 A 1 HETATM 22 H H61 9PG . . . B 2 -24.968 52.365 -2.373 1 95.29 ? H61 9PG 501 A 1 HETATM 23 H H62 9PG . . . B 2 -26.431 52.093 -2.916 1 95.29 ? H62 9PG 501 A 1 HETATM 24 H H5 9PG . . . B 2 -25.907 49.791 -2.268 1 99.9 ? H5 9PG 501 A 1 HETATM 25 H H4 9PG . . . B 2 -23.816 50.177 -1.357 1 99.98 ? H4 9PG 501 A 1 HETATM 26 H H3 9PG . . . B 2 -23.909 48.132 -2.381 1 104.86 ? H3 9PG 501 A 1 HETATM 27 H H2 9PG . . . B 2 -23.05 49.335 -4.774 1 101.73 ? H2 9PG 501 A 1 HETATM 28 H H1 9PG . . . B 2 -25.194 48.911 -5.657 1 102.43 ? H1 9PG 501 A 1 HETATM 29 H H8 9PG . . . B 2 -27.838 45.226 -6.975 1 135.34 ? H8 9PG 501 A 1 HETATM 30 H H9 9PG . . . B 2 -26.097 45.881 -5.598 1 125.62 ? H9 9PG 501 A 1 HETATM 31 H H10 9PG . . . B 2 -28.144 49.193 -4.6 1 128.61 ? H10 9PG 501 A 1 HETATM 32 H H11 9PG . . . B 2 -29.882 48.542 -5.972 1 130.22 ? H11 9PG 501 A 1 HETATM 33 H HO2 9PG . . . B 2 -22.562 47.144 -4.287 1 102.05 ? HO2 9PG 501 A 1 HETATM 34 H HO3 9PG . . . B 2 -21.862 47.951 -2.12 1 98.91 ? HO3 9PG 501 A 1 HETATM 35 H HO4 9PG . . . B 2 -22.588 51.554 -2.251 1 117.4 ? HO4 9PG 501 A 1 HETATM 36 H HO6 9PG . . . B 2 -25.589 51.978 -0.504 1 108.39 ? HO6 9PG 501 A 1 # _model_server_stats.io_time_ms 114 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #