data_7L1T
#
_model_server_result.job_id            bzHtdHIiZ53xxwKpC67C8Q 
_model_server_result.datetime_utc      '2025-02-17 17:09:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l1t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    7L1T 
#
_exptl.entry_id    7L1T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              233.158 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7L1T 
_cell.length_a            154.216 
_cell.length_b            154.216 
_cell.length_c            76.257 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L1T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        177 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 6 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             304 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              284 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C4A 
_struct_conn.ptnr2_label_comp_id            PLR 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             PLR 
_struct_conn.ptnr2_auth_seq_id              1001 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.35 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H12 N O5 P' 
_chem_comp.formula_weight    233.158 
_chem_comp.id                PLR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "4'-DEOXYPYRIDOXINE PHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLR doub 260 n y 
N1 C6 PLR sing 261 n y 
C2 C2A PLR sing 262 n n 
C2 C3 PLR sing 263 n y 
C2A H2A1 PLR sing 264 n n 
C2A H2A2 PLR sing 265 n n 
C2A H2A3 PLR sing 266 n n 
C3 O3 PLR sing 267 n n 
C3 C4 PLR doub 268 n y 
O3 HO3 PLR sing 269 n n 
C4 C4A PLR sing 270 n n 
C4 C5 PLR sing 271 n y 
C4A H4A1 PLR sing 272 n n 
C4A H4A2 PLR sing 273 n n 
C4A H4A3 PLR sing 274 n n 
C5 C6 PLR doub 275 n y 
C5 C5A PLR sing 276 n n 
C6 H6 PLR sing 277 n n 
C5A O4P PLR sing 278 n n 
C5A H5A1 PLR sing 279 n n 
C5A H5A2 PLR sing 280 n n 
O4P P PLR sing 281 n n 
P O1P PLR doub 282 n n 
P O2P PLR sing 283 n n 
P O3P PLR sing 284 n n 
O2P H2P PLR sing 285 n n 
O3P H3P PLR sing 286 n n 
#
_atom_sites.entry_id                     7L1T 
_atom_sites.fract_transf_matrix[1][1]    0.006484 
_atom_sites.fract_transf_matrix[1][2]    0.003744 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007488 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013114 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLR A 1 1001 1001 PLR PLR . 
C 3 PO4 A 1 1002 1002 PO4 PO4 . 
D 4 HOH A 1 1101 99 HOH HOH . 
D 4 HOH A 2 1102 92 HOH HOH . 
D 4 HOH A 3 1103 93 HOH HOH . 
D 4 HOH A 4 1104 83 HOH HOH . 
D 4 HOH A 5 1105 36 HOH HOH . 
D 4 HOH A 6 1106 27 HOH HOH . 
D 4 HOH A 7 1107 54 HOH HOH . 
D 4 HOH A 8 1108 77 HOH HOH . 
D 4 HOH A 9 1109 75 HOH HOH . 
D 4 HOH A 10 1110 98 HOH HOH . 
D 4 HOH A 11 1111 86 HOH HOH . 
D 4 HOH A 12 1112 55 HOH HOH . 
D 4 HOH A 13 1113 44 HOH HOH . 
D 4 HOH A 14 1114 40 HOH HOH . 
D 4 HOH A 15 1115 70 HOH HOH . 
D 4 HOH A 16 1116 7 HOH HOH . 
D 4 HOH A 17 1117 51 HOH HOH . 
D 4 HOH A 18 1118 9 HOH HOH . 
D 4 HOH A 19 1119 71 HOH HOH . 
D 4 HOH A 20 1120 16 HOH HOH . 
D 4 HOH A 21 1121 3 HOH HOH . 
D 4 HOH A 22 1122 8 HOH HOH . 
D 4 HOH A 23 1123 91 HOH HOH . 
D 4 HOH A 24 1124 10 HOH HOH . 
D 4 HOH A 25 1125 78 HOH HOH . 
D 4 HOH A 26 1126 1 HOH HOH . 
D 4 HOH A 27 1127 5 HOH HOH . 
D 4 HOH A 28 1128 18 HOH HOH . 
D 4 HOH A 29 1129 97 HOH HOH . 
D 4 HOH A 30 1130 80 HOH HOH . 
D 4 HOH A 31 1131 65 HOH HOH . 
D 4 HOH A 32 1132 22 HOH HOH . 
D 4 HOH A 33 1133 33 HOH HOH . 
D 4 HOH A 34 1134 23 HOH HOH . 
D 4 HOH A 35 1135 85 HOH HOH . 
D 4 HOH A 36 1136 28 HOH HOH . 
D 4 HOH A 37 1137 42 HOH HOH . 
D 4 HOH A 38 1138 17 HOH HOH . 
D 4 HOH A 39 1139 12 HOH HOH . 
D 4 HOH A 40 1140 34 HOH HOH . 
D 4 HOH A 41 1141 84 HOH HOH . 
D 4 HOH A 42 1142 66 HOH HOH . 
D 4 HOH A 43 1143 21 HOH HOH . 
D 4 HOH A 44 1144 11 HOH HOH . 
D 4 HOH A 45 1145 62 HOH HOH . 
D 4 HOH A 46 1146 52 HOH HOH . 
D 4 HOH A 47 1147 13 HOH HOH . 
D 4 HOH A 48 1148 2 HOH HOH . 
D 4 HOH A 49 1149 49 HOH HOH . 
D 4 HOH A 50 1150 15 HOH HOH . 
D 4 HOH A 51 1151 69 HOH HOH . 
D 4 HOH A 52 1152 30 HOH HOH . 
D 4 HOH A 53 1153 6 HOH HOH . 
D 4 HOH A 54 1154 46 HOH HOH . 
D 4 HOH A 55 1155 53 HOH HOH . 
D 4 HOH A 56 1156 26 HOH HOH . 
D 4 HOH A 57 1157 89 HOH HOH . 
D 4 HOH A 58 1158 79 HOH HOH . 
D 4 HOH A 59 1159 41 HOH HOH . 
D 4 HOH A 60 1160 24 HOH HOH . 
D 4 HOH A 61 1161 60 HOH HOH . 
D 4 HOH A 62 1162 19 HOH HOH . 
D 4 HOH A 63 1163 50 HOH HOH . 
D 4 HOH A 64 1164 20 HOH HOH . 
D 4 HOH A 65 1165 4 HOH HOH . 
D 4 HOH A 66 1166 32 HOH HOH . 
D 4 HOH A 67 1167 45 HOH HOH . 
D 4 HOH A 68 1168 39 HOH HOH . 
D 4 HOH A 69 1169 35 HOH HOH . 
D 4 HOH A 70 1170 67 HOH HOH . 
D 4 HOH A 71 1171 58 HOH HOH . 
D 4 HOH A 72 1172 37 HOH HOH . 
D 4 HOH A 73 1173 31 HOH HOH . 
D 4 HOH A 74 1174 29 HOH HOH . 
D 4 HOH A 75 1175 76 HOH HOH . 
D 4 HOH A 76 1176 25 HOH HOH . 
D 4 HOH A 77 1177 87 HOH HOH . 
D 4 HOH A 78 1178 74 HOH HOH . 
D 4 HOH A 79 1179 57 HOH HOH . 
D 4 HOH A 80 1180 81 HOH HOH . 
D 4 HOH A 81 1181 59 HOH HOH . 
D 4 HOH A 82 1182 61 HOH HOH . 
D 4 HOH A 83 1183 14 HOH HOH . 
D 4 HOH A 84 1184 64 HOH HOH . 
D 4 HOH A 85 1185 82 HOH HOH . 
D 4 HOH A 86 1186 43 HOH HOH . 
D 4 HOH A 87 1187 63 HOH HOH . 
D 4 HOH A 88 1188 95 HOH HOH . 
D 4 HOH A 89 1189 68 HOH HOH . 
D 4 HOH A 90 1190 73 HOH HOH . 
D 4 HOH A 91 1191 88 HOH HOH . 
D 4 HOH A 92 1192 72 HOH HOH . 
D 4 HOH A 93 1193 56 HOH HOH . 
D 4 HOH A 94 1194 90 HOH HOH . 
D 4 HOH A 95 1195 38 HOH HOH . 
D 4 HOH A 96 1196 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLR . . . B 2 49.258 96.209 23.132 1 53.74 ? N1 PLR 1001 A 1 
HETATM 2 C C2 PLR . . . B 2 48.453 95.582 22.21 1 54.23 ? C2 PLR 1001 A 1 
HETATM 3 C C2A PLR . . . B 2 48.463 96.033 20.78 1 58.5 ? C2A PLR 1001 A 1 
HETATM 4 C C3 PLR . . . B 2 47.632 94.534 22.606 1 53.97 ? C3 PLR 1001 A 1 
HETATM 5 O O3 PLR . . . B 2 46.836 93.916 21.679 1 59.02 ? O3 PLR 1001 A 1 
HETATM 6 C C4 PLR . . . B 2 47.613 94.096 23.927 1 48.02 ? C4 PLR 1001 A 1 
HETATM 7 C C4A PLR . . . B 2 47.173 92.675 24.136 1 59.42 ? C4A PLR 1001 A 1 
HETATM 8 C C5 PLR . . . B 2 48.435 94.741 24.862 1 54.31 ? C5 PLR 1001 A 1 
HETATM 9 C C6 PLR . . . B 2 49.248 95.79 24.445 1 52.08 ? C6 PLR 1001 A 1 
HETATM 10 C C5A PLR . . . B 2 48.512 94.375 26.335 1 57.29 ? C5A PLR 1001 A 1 
HETATM 11 O O4P PLR . . . B 2 47.433 93.608 26.817 1 64.03 ? O4P PLR 1001 A 1 
HETATM 12 P P PLR . . . B 2 47.271 93.32 28.393 1 57.83 ? P PLR 1001 A 1 
HETATM 13 O O1P PLR . . . B 2 47.36 91.832 28.631 1 61.5 ? O1P PLR 1001 A 1 
HETATM 14 O O2P PLR . . . B 2 45.928 93.845 28.838 1 62.38 ? O2P PLR 1001 A 1 
HETATM 15 O O3P PLR . . . B 2 48.365 94.025 29.157 1 54.04 ? O3P PLR 1001 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#