data_7L2H
#
_model_server_result.job_id            dx-F1ulaXbAe_n4K5jaIEw 
_model_server_result.datetime_utc      '2024-11-14 17:29:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l2h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":902}' 
#
_entry.id    7L2H 
#
_exptl.entry_id    7L2H 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.64 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13lambda~5~-phosphahexadecan-10-yl tridecanoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7L2H 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L2H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 K N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 390 A CYS 386 1_555 A SG CYS 394 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 A O GLY 647 A GLY 643 1_555 G NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc2 G NA NA . A NA 903 1_555 B O GLY 647 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc3 G NA NA . A NA 903 1_555 C O GLY 647 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc4 G NA NA . A NA 903 1_555 D O GLY 647 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
#
_chem_comp.formula           'C25 H50 N O8 P' 
_chem_comp.formula_weight    523.64 
_chem_comp.id                XJD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13lambda~5~-phosphahexadecan-10-yl tridecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 XJD sing 463 n n 
C12 C11 XJD sing 464 n n 
C11 O5 XJD sing 465 n n 
O5 P XJD sing 466 n n 
O3 P XJD doub 467 n n 
P O4 XJD sing 468 n n 
P O2 XJD sing 469 n n 
O2 C10 XJD sing 470 n n 
C10 C9 XJD sing 471 n n 
C8 C9 XJD sing 472 n n 
C8 O1 XJD sing 473 n n 
C9 O6 XJD sing 474 n n 
O1 C7 XJD sing 475 n n 
O6 C13 XJD sing 476 n n 
O7 C13 XJD doub 477 n n 
O C7 XJD doub 478 n n 
C7 C6 XJD sing 479 n n 
C13 C14 XJD sing 480 n n 
C6 C5 XJD sing 481 n n 
C14 C15 XJD sing 482 n n 
C15 C16 XJD sing 483 n n 
C5 C4 XJD sing 484 n n 
C16 C17 XJD sing 485 n n 
C4 C3 XJD sing 486 n n 
C17 C18 XJD sing 487 n n 
C18 C19 XJD sing 488 n n 
C3 C2 XJD sing 489 n n 
C20 C19 XJD sing 490 n n 
C20 C21 XJD sing 491 n n 
C21 C22 XJD sing 492 n n 
C22 C23 XJD sing 493 n n 
C2 C1 XJD sing 494 n n 
C23 C24 XJD sing 495 n n 
C24 C25 XJD sing 496 n n 
C11 H1 XJD sing 497 n n 
C11 H2 XJD sing 498 n n 
C12 H3 XJD sing 499 n n 
C12 H4 XJD sing 500 n n 
C14 H5 XJD sing 501 n n 
C14 H6 XJD sing 502 n n 
C15 H7 XJD sing 503 n n 
C15 H8 XJD sing 504 n n 
C16 H9 XJD sing 505 n n 
C16 H10 XJD sing 506 n n 
C17 H11 XJD sing 507 n n 
C17 H12 XJD sing 508 n n 
C18 H13 XJD sing 509 n n 
C18 H14 XJD sing 510 n n 
C19 H15 XJD sing 511 n n 
C19 H16 XJD sing 512 n n 
C20 H17 XJD sing 513 n n 
C20 H18 XJD sing 514 n n 
C21 H19 XJD sing 515 n n 
C21 H20 XJD sing 516 n n 
C22 H21 XJD sing 517 n n 
C22 H22 XJD sing 518 n n 
C23 H23 XJD sing 519 n n 
C23 H24 XJD sing 520 n n 
C25 H25 XJD sing 521 n n 
C25 H26 XJD sing 522 n n 
C25 H27 XJD sing 523 n n 
N H28 XJD sing 524 n n 
N H29 XJD sing 525 n n 
C1 H31 XJD sing 526 n n 
C1 H32 XJD sing 527 n n 
C1 H33 XJD sing 528 n n 
C10 H34 XJD sing 529 n n 
C10 H35 XJD sing 530 n n 
C2 H36 XJD sing 531 n n 
C2 H37 XJD sing 532 n n 
C24 H38 XJD sing 533 n n 
C24 H39 XJD sing 534 n n 
C3 H40 XJD sing 535 n n 
C3 H41 XJD sing 536 n n 
C4 H42 XJD sing 537 n n 
C4 H43 XJD sing 538 n n 
C5 H44 XJD sing 539 n n 
C5 H45 XJD sing 540 n n 
C6 H46 XJD sing 541 n n 
C6 H47 XJD sing 542 n n 
C8 H48 XJD sing 543 n n 
C8 H49 XJD sing 544 n n 
C9 H50 XJD sing 545 n n 
O4 H51 XJD sing 546 n n 
#
_atom_sites.entry_id                     7L2H 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 XJ7 A 1 901 801 XJ7 6ER . 
F 3 XJD A 1 902 901 XJD 6OF . 
G 4 NA A 1 903 1 NA NA . 
H 2 XJ7 D 1 901 801 XJ7 6ER . 
I 3 XJD D 1 902 901 XJD 6OF . 
J 2 XJ7 B 1 901 801 XJ7 6ER . 
K 3 XJD B 1 902 901 XJD 6OF . 
L 2 XJ7 C 1 901 801 XJ7 6ER . 
M 3 XJD C 1 902 901 XJD 6OF . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 XJD . . . I 3 112.749 119.128 93.748 1 45.84 ? C11 XJD 902 D 1 
HETATM 2 C C12 XJD . . . I 3 112.484 118.153 92.602 1 45.84 ? C12 XJD 902 D 1 
HETATM 3 C C13 XJD . . . I 3 110.18 118.297 100.359 1 45.84 ? C13 XJD 902 D 1 
HETATM 4 C C14 XJD . . . I 3 110.085 118.08 101.867 1 45.84 ? C14 XJD 902 D 1 
HETATM 5 C C15 XJD . . . I 3 109.917 119.385 102.644 1 45.84 ? C15 XJD 902 D 1 
HETATM 6 C C16 XJD . . . I 3 110.868 119.47 103.836 1 45.84 ? C16 XJD 902 D 1 
HETATM 7 C C17 XJD . . . I 3 110.692 120.757 104.642 1 45.84 ? C17 XJD 902 D 1 
HETATM 8 C C18 XJD . . . I 3 112.017 121.471 104.914 1 45.84 ? C18 XJD 902 D 1 
HETATM 9 C C19 XJD . . . I 3 112.932 120.697 105.869 1 45.84 ? C19 XJD 902 D 1 
HETATM 10 C C20 XJD . . . I 3 114.406 120.666 105.446 1 45.84 ? C20 XJD 902 D 1 
HETATM 11 C C21 XJD . . . I 3 115.18 121.937 105.828 1 45.84 ? C21 XJD 902 D 1 
HETATM 12 C C22 XJD . . . I 3 116.536 121.711 106.506 1 45.84 ? C22 XJD 902 D 1 
HETATM 13 C C23 XJD . . . I 3 116.587 122.268 107.93 1 45.84 ? C23 XJD 902 D 1 
HETATM 14 C C25 XJD . . . I 3 117.567 121.903 110.243 1 45.84 ? C25 XJD 902 D 1 
HETATM 15 N N XJD . . . I 3 112.871 118.755 91.339 1 45.84 ? N XJD 902 D 1 
HETATM 16 O O XJD . . . I 3 115.614 116.337 100.22 1 45.84 ? O XJD 902 D 1 
HETATM 17 C C1 XJD . . . I 3 115.452 117.174 107.832 1 45.84 ? C1 XJD 902 D 1 
HETATM 18 C C10 XJD . . . I 3 111.003 117.582 97.519 1 45.84 ? C10 XJD 902 D 1 
HETATM 19 C C2 XJD . . . I 3 115.311 116.113 106.745 1 45.84 ? C2 XJD 902 D 1 
HETATM 20 C C24 XJD . . . I 3 117.75 121.705 108.742 1 45.84 ? C24 XJD 902 D 1 
HETATM 21 C C3 XJD . . . I 3 115.364 116.7 105.338 1 45.84 ? C3 XJD 902 D 1 
HETATM 22 C C4 XJD . . . I 3 114.677 115.804 104.311 1 45.84 ? C4 XJD 902 D 1 
HETATM 23 C C5 XJD . . . I 3 115.144 116.075 102.884 1 45.84 ? C5 XJD 902 D 1 
HETATM 24 C C6 XJD . . . I 3 113.982 116.158 101.9 1 45.84 ? C6 XJD 902 D 1 
HETATM 25 C C7 XJD . . . I 3 114.468 116.158 100.453 1 45.84 ? C7 XJD 902 D 1 
HETATM 26 C C8 XJD . . . I 3 113.199 117.111 98.719 1 45.84 ? C8 XJD 902 D 1 
HETATM 27 C C9 XJD . . . I 3 111.682 117.278 98.857 1 45.84 ? C9 XJD 902 D 1 
HETATM 28 O O1 XJD . . . I 3 113.568 115.947 99.404 1 45.84 ? O1 XJD 902 D 1 
HETATM 29 O O2 XJD . . . I 3 111.005 118.966 97.324 1 45.84 ? O2 XJD 902 D 1 
HETATM 30 O O3 XJD . . . I 3 111.81 121.101 96.135 1 45.84 ? O3 XJD 902 D 1 
HETATM 31 O O4 XJD . . . I 3 113.464 119.348 96.657 1 45.84 ? O4 XJD 902 D 1 
HETATM 32 O O5 XJD . . . I 3 111.788 118.93 94.743 1 45.84 ? O5 XJD 902 D 1 
HETATM 33 O O6 XJD . . . I 3 111.431 118.337 99.736 1 45.84 ? O6 XJD 902 D 1 
HETATM 34 O O7 XJD . . . I 3 109.193 118.435 99.72 1 45.84 ? O7 XJD 902 D 1 
HETATM 35 P P XJD . . . I 3 112.043 119.613 96.221 1 45.84 ? P XJD 902 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#