data_7L2I # _model_server_result.job_id zujjrZQTVclGbpDi5x-A-w _model_server_result.datetime_utc '2025-01-02 16:25:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":901}' # _entry.id 7L2I # _exptl.entry_id 7L2I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 600.633 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1S,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L2I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C26 H49 O13 P' _chem_comp.formula_weight 600.633 _chem_comp.id XJA _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1S,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C23 XJA sing 374 n n C22 C21 XJA sing 375 n n C21 C20 XJA sing 376 n n C20 C19 XJA sing 377 n n C19 C18 XJA sing 378 n n C18 C17 XJA sing 379 n n C17 C16 XJA sing 380 n n C16 C15 XJA sing 381 n n C15 C14 XJA sing 382 n n C14 C13 XJA sing 383 n n C10 C9 XJA sing 384 n n C13 C12 XJA sing 385 n n C12 C11 XJA sing 386 n n C9 C8 XJA sing 387 n n C8 C7 XJA sing 388 n n C11 O10 XJA doub 389 n n C11 O9 XJA sing 390 n n C7 O7 XJA sing 391 n n C7 O8 XJA doub 392 n n O9 C5 XJA sing 393 n n O7 C6 XJA sing 394 n n C5 C6 XJA sing 395 n n C5 C4 XJA sing 396 n n C4 O6 XJA sing 397 n n O6 P XJA sing 398 n n O5 P XJA doub 399 n n P O4 XJA sing 400 n n P O3 XJA sing 401 n n O3 C3 XJA sing 402 n n C3 C24 XJA sing 403 n n C3 C2 XJA sing 404 n n O2 C2 XJA sing 405 n n C24 O11 XJA sing 406 n n C24 C25 XJA sing 407 n n C2 C1 XJA sing 408 n n C25 O12 XJA sing 409 n n C25 C XJA sing 410 n n C1 C XJA sing 411 n n C1 O1 XJA sing 412 n n C O XJA sing 413 n n C10 H1 XJA sing 414 n n C10 H2 XJA sing 415 n n C10 H3 XJA sing 416 n n O11 H4 XJA sing 417 n n C16 H5 XJA sing 418 n n C16 H6 XJA sing 419 n n C17 H7 XJA sing 420 n n C17 H8 XJA sing 421 n n C18 H9 XJA sing 422 n n C18 H10 XJA sing 423 n n C19 H11 XJA sing 424 n n C19 H12 XJA sing 425 n n C20 H13 XJA sing 426 n n C20 H14 XJA sing 427 n n C21 H15 XJA sing 428 n n C21 H16 XJA sing 429 n n C H17 XJA sing 430 n n O H18 XJA sing 431 n n C1 H19 XJA sing 432 n n C12 H20 XJA sing 433 n n C12 H21 XJA sing 434 n n C13 H22 XJA sing 435 n n C13 H23 XJA sing 436 n n C14 H24 XJA sing 437 n n C14 H25 XJA sing 438 n n C15 H26 XJA sing 439 n n C15 H27 XJA sing 440 n n C2 H28 XJA sing 441 n n C22 H29 XJA sing 442 n n C22 H30 XJA sing 443 n n C23 H31 XJA sing 444 n n C23 H32 XJA sing 445 n n C23 H33 XJA sing 446 n n C24 H34 XJA sing 447 n n C25 H35 XJA sing 448 n n C3 H36 XJA sing 449 n n C4 H37 XJA sing 450 n n C4 H38 XJA sing 451 n n C5 H39 XJA sing 452 n n C6 H40 XJA sing 453 n n C6 H41 XJA sing 454 n n C8 H42 XJA sing 455 n n C8 H43 XJA sing 456 n n C9 H44 XJA sing 457 n n C9 H45 XJA sing 458 n n O1 H46 XJA sing 459 n n O12 H47 XJA sing 460 n n O2 H48 XJA sing 461 n n O4 H49 XJA sing 462 n n # _atom_sites.entry_id 7L2I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 XJA A 1 901 801 XJA 6ES . F 2 XJA C 1 901 801 XJA 6ES . G 2 XJA D 1 901 801 XJA 6ES . H 2 XJA B 1 901 801 XJA 6ES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XJA . . . G 2 117.794 108.164 117.633 1 72.85 ? C10 XJA 901 D 1 HETATM 2 O O11 XJA . . . G 2 121.304 105.212 127.924 1 72.85 ? O11 XJA 901 D 1 HETATM 3 C C16 XJA . . . G 2 121.649 107.273 115.588 1 72.85 ? C16 XJA 901 D 1 HETATM 4 C C17 XJA . . . G 2 121.998 107.137 114.114 1 72.85 ? C17 XJA 901 D 1 HETATM 5 C C18 XJA . . . G 2 120.752 106.942 113.254 1 72.85 ? C18 XJA 901 D 1 HETATM 6 C C19 XJA . . . G 2 121.121 106.938 111.778 1 72.85 ? C19 XJA 901 D 1 HETATM 7 C C20 XJA . . . G 2 119.921 106.881 110.84 1 72.85 ? C20 XJA 901 D 1 HETATM 8 C C21 XJA . . . G 2 120.377 106.951 109.388 1 72.85 ? C21 XJA 901 D 1 HETATM 9 C C XJA . . . G 2 119.837 103.499 129.511 1 72.85 ? C XJA 901 D 1 HETATM 10 O O XJA . . . G 2 120.666 104.364 130.255 1 72.85 ? O XJA 901 D 1 HETATM 11 C C1 XJA . . . G 2 120.716 102.401 128.926 1 72.85 ? C1 XJA 901 D 1 HETATM 12 C C11 XJA . . . G 2 123.945 104.37 119.877 1 72.85 ? C11 XJA 901 D 1 HETATM 13 C C12 XJA . . . G 2 124.442 105.324 118.795 1 72.85 ? C12 XJA 901 D 1 HETATM 14 C C13 XJA . . . G 2 123.32 105.866 117.918 1 72.85 ? C13 XJA 901 D 1 HETATM 15 C C14 XJA . . . G 2 123.814 106.858 116.872 1 72.85 ? C14 XJA 901 D 1 HETATM 16 C C15 XJA . . . G 2 122.762 107.875 116.442 1 72.85 ? C15 XJA 901 D 1 HETATM 17 C C2 XJA . . . G 2 120.402 102.122 127.452 1 72.85 ? C2 XJA 901 D 1 HETATM 18 C C22 XJA . . . G 2 119.299 106.499 108.417 1 72.85 ? C22 XJA 901 D 1 HETATM 19 C C23 XJA . . . G 2 118.049 107.364 108.516 1 72.85 ? C23 XJA 901 D 1 HETATM 20 C C24 XJA . . . G 2 120.162 104.65 127.322 1 72.85 ? C24 XJA 901 D 1 HETATM 21 C C25 XJA . . . G 2 119.156 104.328 128.422 1 72.85 ? C25 XJA 901 D 1 HETATM 22 C C3 XJA . . . G 2 120.574 103.373 126.586 1 72.85 ? C3 XJA 901 D 1 HETATM 23 C C4 XJA . . . G 2 123.46 104.629 122.932 1 72.85 ? C4 XJA 901 D 1 HETATM 24 C C5 XJA . . . G 2 122.967 105.485 121.777 1 72.85 ? C5 XJA 901 D 1 HETATM 25 C C6 XJA . . . G 2 121.605 106.101 122.101 1 72.85 ? C6 XJA 901 D 1 HETATM 26 C C7 XJA . . . G 2 119.963 107.014 120.597 1 72.85 ? C7 XJA 901 D 1 HETATM 27 C C8 XJA . . . G 2 119.637 107.706 119.291 1 72.85 ? C8 XJA 901 D 1 HETATM 28 C C9 XJA . . . G 2 118.167 107.509 118.958 1 72.85 ? C9 XJA 901 D 1 HETATM 29 O O1 XJA . . . G 2 120.466 101.244 129.655 1 72.85 ? O1 XJA 901 D 1 HETATM 30 O O10 XJA . . . G 2 124.505 103.352 120.054 1 72.85 ? O10 XJA 901 D 1 HETATM 31 O O12 XJA . . . G 2 118.681 105.54 128.976 1 72.85 ? O12 XJA 901 D 1 HETATM 32 O O2 XJA . . . G 2 121.278 101.159 126.929 1 72.85 ? O2 XJA 901 D 1 HETATM 33 O O3 XJA . . . G 2 121.917 103.448 126.251 1 72.85 ? O3 XJA 901 D 1 HETATM 34 O O4 XJA . . . G 2 123.552 102.35 124.679 1 72.85 ? O4 XJA 901 D 1 HETATM 35 O O5 XJA . . . G 2 121.162 102.351 124.067 1 72.85 ? O5 XJA 901 D 1 HETATM 36 O O6 XJA . . . G 2 122.482 104.552 123.916 1 72.85 ? O6 XJA 901 D 1 HETATM 37 O O7 XJA . . . G 2 121.275 106.997 121.074 1 72.85 ? O7 XJA 901 D 1 HETATM 38 O O8 XJA . . . G 2 119.079 106.514 121.183 1 72.85 ? O8 XJA 901 D 1 HETATM 39 O O9 XJA . . . G 2 122.817 104.67 120.644 1 72.85 ? O9 XJA 901 D 1 HETATM 40 P P XJA . . . G 2 122.284 103.131 124.699 1 72.85 ? P XJA 901 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 69 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 40 #