data_7L2I
#
_model_server_result.job_id            xzpJMUwsWM1JyZTHM2dOQA 
_model_server_result.datetime_utc      '2025-01-02 16:16:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l2i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":901}' 
#
_entry.id    7L2I 
#
_exptl.entry_id    7L2I 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              600.633 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1S,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7L2I 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L2I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C26 H49 O13 P' 
_chem_comp.formula_weight    600.633 
_chem_comp.id                XJA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1S,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C23 XJA sing 374 n n 
C22 C21 XJA sing 375 n n 
C21 C20 XJA sing 376 n n 
C20 C19 XJA sing 377 n n 
C19 C18 XJA sing 378 n n 
C18 C17 XJA sing 379 n n 
C17 C16 XJA sing 380 n n 
C16 C15 XJA sing 381 n n 
C15 C14 XJA sing 382 n n 
C14 C13 XJA sing 383 n n 
C10 C9 XJA sing 384 n n 
C13 C12 XJA sing 385 n n 
C12 C11 XJA sing 386 n n 
C9 C8 XJA sing 387 n n 
C8 C7 XJA sing 388 n n 
C11 O10 XJA doub 389 n n 
C11 O9 XJA sing 390 n n 
C7 O7 XJA sing 391 n n 
C7 O8 XJA doub 392 n n 
O9 C5 XJA sing 393 n n 
O7 C6 XJA sing 394 n n 
C5 C6 XJA sing 395 n n 
C5 C4 XJA sing 396 n n 
C4 O6 XJA sing 397 n n 
O6 P XJA sing 398 n n 
O5 P XJA doub 399 n n 
P O4 XJA sing 400 n n 
P O3 XJA sing 401 n n 
O3 C3 XJA sing 402 n n 
C3 C24 XJA sing 403 n n 
C3 C2 XJA sing 404 n n 
O2 C2 XJA sing 405 n n 
C24 O11 XJA sing 406 n n 
C24 C25 XJA sing 407 n n 
C2 C1 XJA sing 408 n n 
C25 O12 XJA sing 409 n n 
C25 C XJA sing 410 n n 
C1 C XJA sing 411 n n 
C1 O1 XJA sing 412 n n 
C O XJA sing 413 n n 
C10 H1 XJA sing 414 n n 
C10 H2 XJA sing 415 n n 
C10 H3 XJA sing 416 n n 
O11 H4 XJA sing 417 n n 
C16 H5 XJA sing 418 n n 
C16 H6 XJA sing 419 n n 
C17 H7 XJA sing 420 n n 
C17 H8 XJA sing 421 n n 
C18 H9 XJA sing 422 n n 
C18 H10 XJA sing 423 n n 
C19 H11 XJA sing 424 n n 
C19 H12 XJA sing 425 n n 
C20 H13 XJA sing 426 n n 
C20 H14 XJA sing 427 n n 
C21 H15 XJA sing 428 n n 
C21 H16 XJA sing 429 n n 
C H17 XJA sing 430 n n 
O H18 XJA sing 431 n n 
C1 H19 XJA sing 432 n n 
C12 H20 XJA sing 433 n n 
C12 H21 XJA sing 434 n n 
C13 H22 XJA sing 435 n n 
C13 H23 XJA sing 436 n n 
C14 H24 XJA sing 437 n n 
C14 H25 XJA sing 438 n n 
C15 H26 XJA sing 439 n n 
C15 H27 XJA sing 440 n n 
C2 H28 XJA sing 441 n n 
C22 H29 XJA sing 442 n n 
C22 H30 XJA sing 443 n n 
C23 H31 XJA sing 444 n n 
C23 H32 XJA sing 445 n n 
C23 H33 XJA sing 446 n n 
C24 H34 XJA sing 447 n n 
C25 H35 XJA sing 448 n n 
C3 H36 XJA sing 449 n n 
C4 H37 XJA sing 450 n n 
C4 H38 XJA sing 451 n n 
C5 H39 XJA sing 452 n n 
C6 H40 XJA sing 453 n n 
C6 H41 XJA sing 454 n n 
C8 H42 XJA sing 455 n n 
C8 H43 XJA sing 456 n n 
C9 H44 XJA sing 457 n n 
C9 H45 XJA sing 458 n n 
O1 H46 XJA sing 459 n n 
O12 H47 XJA sing 460 n n 
O2 H48 XJA sing 461 n n 
O4 H49 XJA sing 462 n n 
#
_atom_sites.entry_id                     7L2I 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 XJA A 1 901 801 XJA 6ES . 
F 2 XJA C 1 901 801 XJA 6ES . 
G 2 XJA D 1 901 801 XJA 6ES . 
H 2 XJA B 1 901 801 XJA 6ES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 XJA . . . H 2 139.804 149.435 117.643 1 73.33 ? C10 XJA 901 B 1 
HETATM 2 O O11 XJA . . . H 2 136.314 152.394 127.953 1 73.33 ? O11 XJA 901 B 1 
HETATM 3 C C16 XJA . . . H 2 135.94 150.336 115.612 1 73.33 ? C16 XJA 901 B 1 
HETATM 4 C C17 XJA . . . H 2 135.602 150.47 114.135 1 73.33 ? C17 XJA 901 B 1 
HETATM 5 C C18 XJA . . . H 2 136.847 150.656 113.278 1 73.33 ? C18 XJA 901 B 1 
HETATM 6 C C19 XJA . . . H 2 136.474 150.655 111.803 1 73.33 ? C19 XJA 901 B 1 
HETATM 7 C C20 XJA . . . H 2 137.669 150.73 110.861 1 73.33 ? C20 XJA 901 B 1 
HETATM 8 C C21 XJA . . . H 2 137.215 150.65 109.408 1 73.33 ? C21 XJA 901 B 1 
HETATM 9 C C XJA . . . H 2 137.767 154.106 129.55 1 73.33 ? C XJA 901 B 1 
HETATM 10 O O XJA . . . H 2 136.932 153.238 130.281 1 73.33 ? O XJA 901 B 1 
HETATM 11 C C1 XJA . . . H 2 136.888 155.206 128.962 1 73.33 ? C1 XJA 901 B 1 
HETATM 12 C C11 XJA . . . H 2 133.643 153.245 119.887 1 73.33 ? C11 XJA 901 B 1 
HETATM 13 C C12 XJA . . . H 2 133.141 152.271 118.826 1 73.33 ? C12 XJA 901 B 1 
HETATM 14 C C13 XJA . . . H 2 134.267 151.74 117.948 1 73.33 ? C13 XJA 901 B 1 
HETATM 15 C C14 XJA . . . H 2 133.774 150.755 116.895 1 73.33 ? C14 XJA 901 B 1 
HETATM 16 C C15 XJA . . . H 2 134.82 149.737 116.456 1 73.33 ? C15 XJA 901 B 1 
HETATM 17 C C2 XJA . . . H 2 137.212 155.485 127.49 1 73.33 ? C2 XJA 901 B 1 
HETATM 18 C C22 XJA . . . H 2 138.29 151.102 108.435 1 73.33 ? C22 XJA 901 B 1 
HETATM 19 C C23 XJA . . . H 2 139.537 150.229 108.523 1 73.33 ? C23 XJA 901 B 1 
HETATM 20 C C24 XJA . . . H 2 137.453 152.96 127.36 1 73.33 ? C24 XJA 901 B 1 
HETATM 21 C C25 XJA . . . H 2 138.459 153.286 128.46 1 73.33 ? C25 XJA 901 B 1 
HETATM 22 C C3 XJA . . . H 2 137.04 154.236 126.627 1 73.33 ? C3 XJA 901 B 1 
HETATM 23 C C4 XJA . . . H 2 134.159 153.018 122.95 1 73.33 ? C4 XJA 901 B 1 
HETATM 24 C C5 XJA . . . H 2 134.64 152.153 121.796 1 73.33 ? C5 XJA 901 B 1 
HETATM 25 C C6 XJA . . . H 2 136.012 151.551 122.097 1 73.33 ? C6 XJA 901 B 1 
HETATM 26 C C7 XJA . . . H 2 137.629 150.588 120.61 1 73.33 ? C7 XJA 901 B 1 
HETATM 27 C C8 XJA . . . H 2 137.955 149.892 119.306 1 73.33 ? C8 XJA 901 B 1 
HETATM 28 C C9 XJA . . . H 2 139.426 150.083 118.972 1 73.33 ? C9 XJA 901 B 1 
HETATM 29 O O1 XJA . . . H 2 137.127 156.363 129.698 1 73.33 ? O1 XJA 901 B 1 
HETATM 30 O O10 XJA . . . H 2 133.089 154.268 120.046 1 73.33 ? O10 XJA 901 B 1 
HETATM 31 O O12 XJA . . . H 2 138.938 152.078 129.011 1 73.33 ? O12 XJA 901 B 1 
HETATM 32 O O2 XJA . . . H 2 136.349 156.454 126.963 1 73.33 ? O2 XJA 901 B 1 
HETATM 33 O O3 XJA . . . H 2 135.693 154.155 126.293 1 73.33 ? O3 XJA 901 B 1 
HETATM 34 O O4 XJA . . . H 2 134.05 155.275 124.733 1 73.33 ? O4 XJA 901 B 1 
HETATM 35 O O5 XJA . . . H 2 136.433 155.297 124.124 1 73.33 ? O5 XJA 901 B 1 
HETATM 36 O O6 XJA . . . H 2 135.138 153.088 123.933 1 73.33 ? O6 XJA 901 B 1 
HETATM 37 O O7 XJA . . . H 2 136.312 150.65 121.065 1 73.33 ? O7 XJA 901 B 1 
HETATM 38 O O8 XJA . . . H 2 138.515 151.055 121.219 1 73.33 ? O8 XJA 901 B 1 
HETATM 39 O O9 XJA . . . H 2 134.774 152.957 120.654 1 73.33 ? O9 XJA 901 B 1 
HETATM 40 P P XJA . . . H 2 135.321 154.496 124.747 1 73.33 ? P XJA 901 B 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    68 
_model_server_stats.query_time_ms           484 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           40 
#