data_7L2J # _model_server_result.job_id vekwWjK1aUT99nDNMqcaWw _model_server_result.datetime_utc '2024-11-14 18:02:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 7L2J # _exptl.entry_id 7L2J _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 600.633 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L2J _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 390 A CYS 386 1_555 A SG CYS 394 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 390 B CYS 386 1_555 B SG CYS 394 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 C SG CYS 390 C CYS 386 1_555 C SG CYS 394 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 D SG CYS 390 D CYS 386 1_555 D SG CYS 394 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C26 H49 O13 P' _chem_comp.formula_weight 600.633 _chem_comp.id XJ7 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 XJ7 sing 374 n n C22 C21 XJ7 sing 375 n n C21 C20 XJ7 sing 376 n n C20 C19 XJ7 sing 377 n n C19 C18 XJ7 sing 378 n n C18 C17 XJ7 sing 379 n n C17 C16 XJ7 sing 380 n n C16 C15 XJ7 sing 381 n n C15 C14 XJ7 sing 382 n n C14 C13 XJ7 sing 383 n n C13 C12 XJ7 sing 384 n n C10 C9 XJ7 sing 385 n n C9 C8 XJ7 sing 386 n n C12 C11 XJ7 sing 387 n n C8 C7 XJ7 sing 388 n n O10 C11 XJ7 doub 389 n n C11 O9 XJ7 sing 390 n n C7 O8 XJ7 doub 391 n n C7 O7 XJ7 sing 392 n n O9 C5 XJ7 sing 393 n n O7 C6 XJ7 sing 394 n n C6 C5 XJ7 sing 395 n n C5 C4 XJ7 sing 396 n n C4 O6 XJ7 sing 397 n n O5 P XJ7 doub 398 n n O6 P XJ7 sing 399 n n P O3 XJ7 sing 400 n n P O4 XJ7 sing 401 n n O3 C3 XJ7 sing 402 n n O11 C24 XJ7 sing 403 n n C3 C24 XJ7 sing 404 n n C3 C2 XJ7 sing 405 n n C24 C25 XJ7 sing 406 n n O2 C2 XJ7 sing 407 n n C2 C1 XJ7 sing 408 n n C25 O12 XJ7 sing 409 n n C25 C XJ7 sing 410 n n C1 C XJ7 sing 411 n n C1 O1 XJ7 sing 412 n n C O XJ7 sing 413 n n C10 H1 XJ7 sing 414 n n C10 H2 XJ7 sing 415 n n C10 H3 XJ7 sing 416 n n O11 H4 XJ7 sing 417 n n C16 H5 XJ7 sing 418 n n C16 H6 XJ7 sing 419 n n C17 H7 XJ7 sing 420 n n C17 H8 XJ7 sing 421 n n C19 H9 XJ7 sing 422 n n C19 H10 XJ7 sing 423 n n C20 H11 XJ7 sing 424 n n C20 H12 XJ7 sing 425 n n C21 H13 XJ7 sing 426 n n C21 H14 XJ7 sing 427 n n C23 H15 XJ7 sing 428 n n C23 H16 XJ7 sing 429 n n C23 H17 XJ7 sing 430 n n C25 H18 XJ7 sing 431 n n C1 H19 XJ7 sing 432 n n C H20 XJ7 sing 433 n n O H21 XJ7 sing 434 n n C12 H22 XJ7 sing 435 n n C12 H23 XJ7 sing 436 n n C13 H24 XJ7 sing 437 n n C13 H25 XJ7 sing 438 n n C14 H26 XJ7 sing 439 n n C14 H27 XJ7 sing 440 n n C15 H28 XJ7 sing 441 n n C15 H29 XJ7 sing 442 n n C18 H30 XJ7 sing 443 n n C18 H31 XJ7 sing 444 n n C2 H32 XJ7 sing 445 n n C22 H33 XJ7 sing 446 n n C22 H34 XJ7 sing 447 n n C24 H35 XJ7 sing 448 n n C3 H36 XJ7 sing 449 n n C4 H37 XJ7 sing 450 n n C4 H38 XJ7 sing 451 n n C5 H39 XJ7 sing 452 n n C6 H40 XJ7 sing 453 n n C6 H41 XJ7 sing 454 n n C8 H42 XJ7 sing 455 n n C8 H43 XJ7 sing 456 n n C9 H44 XJ7 sing 457 n n C9 H45 XJ7 sing 458 n n O1 H46 XJ7 sing 459 n n O12 H47 XJ7 sing 460 n n O2 H48 XJ7 sing 461 n n O4 H49 XJ7 sing 462 n n # _atom_sites.entry_id 7L2J _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 XJ7 A 1 901 801 XJ7 6ES . F 2 XJ7 B 1 901 801 XJ7 6ES . G 2 XJ7 C 1 901 801 XJ7 6ES . H 2 XJ7 D 1 901 801 XJ7 6ES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XJ7 . . . E 2 108.095 139.801 117.691 1 63.78 ? C10 XJ7 901 A 1 HETATM 2 O O11 XJ7 . . . E 2 105.918 136.486 126.697 1 63.78 ? O11 XJ7 901 A 1 HETATM 3 C C16 XJ7 . . . E 2 108.133 136.029 115.779 1 63.78 ? C16 XJ7 901 A 1 HETATM 4 C C17 XJ7 . . . E 2 107.596 137.084 114.815 1 63.78 ? C17 XJ7 901 A 1 HETATM 5 C C19 XJ7 . . . E 2 107.098 137.583 112.417 1 63.78 ? C19 XJ7 901 A 1 HETATM 6 C C20 XJ7 . . . E 2 106.949 137.034 111.013 1 63.78 ? C20 XJ7 901 A 1 HETATM 7 C C21 XJ7 . . . E 2 106.789 138.171 110.03 1 63.78 ? C21 XJ7 901 A 1 HETATM 8 C C23 XJ7 . . . E 2 106.288 138.817 107.664 1 63.78 ? C23 XJ7 901 A 1 HETATM 9 C C25 XJ7 . . . E 2 105 136.691 128.908 1 63.78 ? C25 XJ7 901 A 1 HETATM 10 C C1 XJ7 . . . E 2 102.462 136.794 129.118 1 63.78 ? C1 XJ7 901 A 1 HETATM 11 C C XJ7 . . . E 2 103.813 137.256 129.687 1 63.78 ? C XJ7 901 A 1 HETATM 12 O O XJ7 . . . E 2 103.904 138.656 129.613 1 63.78 ? O XJ7 901 A 1 HETATM 13 C C11 XJ7 . . . E 2 104.599 133.896 119.561 1 63.78 ? C11 XJ7 901 A 1 HETATM 14 C C12 XJ7 . . . E 2 105.807 133.029 119.189 1 63.78 ? C12 XJ7 901 A 1 HETATM 15 C C13 XJ7 . . . E 2 106.289 133.211 117.741 1 63.78 ? C13 XJ7 901 A 1 HETATM 16 C C14 XJ7 . . . E 2 107.116 134.487 117.541 1 63.78 ? C14 XJ7 901 A 1 HETATM 17 C C15 XJ7 . . . E 2 107.081 134.961 116.082 1 63.78 ? C15 XJ7 901 A 1 HETATM 18 C C18 XJ7 . . . E 2 107.211 136.488 113.466 1 63.78 ? C18 XJ7 901 A 1 HETATM 19 C C2 XJ7 . . . E 2 102.308 136.94 127.597 1 63.78 ? C2 XJ7 901 A 1 HETATM 20 C C22 XJ7 . . . E 2 106.466 137.669 108.642 1 63.78 ? C22 XJ7 901 A 1 HETATM 21 C C24 XJ7 . . . E 2 104.832 136.992 127.422 1 63.78 ? C24 XJ7 901 A 1 HETATM 22 C C3 XJ7 . . . E 2 103.537 136.402 126.856 1 63.78 ? C3 XJ7 901 A 1 HETATM 23 C C4 XJ7 . . . E 2 104.344 134.602 123.19 1 63.78 ? C4 XJ7 901 A 1 HETATM 24 C C5 XJ7 . . . E 2 104.984 134.631 121.804 1 63.78 ? C5 XJ7 901 A 1 HETATM 25 C C6 XJ7 . . . E 2 105.202 136.098 121.416 1 63.78 ? C6 XJ7 901 A 1 HETATM 26 C C7 XJ7 . . . E 2 106.943 137.495 120.62 1 63.78 ? C7 XJ7 901 A 1 HETATM 27 C C8 XJ7 . . . E 2 107.064 138.034 119.191 1 63.78 ? C8 XJ7 901 A 1 HETATM 28 C C9 XJ7 . . . E 2 107.962 139.266 119.12 1 63.78 ? C9 XJ7 901 A 1 HETATM 29 O O1 XJ7 . . . E 2 101.445 137.554 129.71 1 63.78 ? O1 XJ7 901 A 1 HETATM 30 O O10 XJ7 . . . E 2 104.036 134.491 118.706 1 63.78 ? O10 XJ7 901 A 1 HETATM 31 O O12 XJ7 . . . E 2 106.166 137.34 129.349 1 63.78 ? O12 XJ7 901 A 1 HETATM 32 O O2 XJ7 . . . E 2 101.169 136.217 127.203 1 63.78 ? O2 XJ7 901 A 1 HETATM 33 O O3 XJ7 . . . E 2 103.496 136.757 125.491 1 63.78 ? O3 XJ7 901 A 1 HETATM 34 O O4 XJ7 . . . E 2 102.016 134.703 125.306 1 63.78 ? O4 XJ7 901 A 1 HETATM 35 O O5 XJ7 . . . E 2 101.28 136.764 124.231 1 63.78 ? O5 XJ7 901 A 1 HETATM 36 O O6 XJ7 . . . E 2 103.2 135.411 123.129 1 63.78 ? O6 XJ7 901 A 1 HETATM 37 O O7 XJ7 . . . E 2 106.489 136.185 120.856 1 63.78 ? O7 XJ7 901 A 1 HETATM 38 O O8 XJ7 . . . E 2 107.235 138.189 121.527 1 63.78 ? O8 XJ7 901 A 1 HETATM 39 O O9 XJ7 . . . E 2 104.137 133.972 120.894 1 63.78 ? O9 XJ7 901 A 1 HETATM 40 P P XJ7 . . . E 2 102.47 135.901 124.526 1 63.78 ? P XJ7 901 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 40 #