data_7L2M # _model_server_result.job_id Oaz5fq2V6Kw8v7VvpmeckQ _model_server_result.datetime_utc '2024-11-24 03:48:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l2m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":901}' # _entry.id 7L2M # _exptl.entry_id 7L2M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 628.708 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description resiniferatoxin _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L2M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L2M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 3 E CYS 2 1_555 E SG CYS 17 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 E SG CYS 10 E CYS 9 1_555 E SG CYS 24 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 E SG CYS 16 E CYS 15 1_555 E SG CYS 32 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 E SG CYS 45 E CYS 44 1_555 E SG CYS 59 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 E SG CYS 52 E CYS 51 1_555 E SG CYS 64 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 E SG CYS 58 E CYS 57 1_555 E SG CYS 72 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 F SG CYS 3 F CYS 2 1_555 F SG CYS 17 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 F SG CYS 10 F CYS 9 1_555 F SG CYS 24 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf9 F SG CYS 16 F CYS 15 1_555 F SG CYS 32 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 F SG CYS 45 F CYS 44 1_555 F SG CYS 59 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 F SG CYS 52 F CYS 51 1_555 F SG CYS 64 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 F SG CYS 58 F CYS 57 1_555 F SG CYS 72 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C37 H40 O9' _chem_comp.formula_weight 628.708 _chem_comp.id 6EU _chem_comp.mon_nstd_flag . _chem_comp.name resiniferatoxin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RTX # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAI CBS 6EU sing 1 n n CBR CBS 6EU doub 2 n y CBR CBP 6EU sing 3 n y CBS CBQ 6EU sing 4 n y CBP CBN 6EU doub 5 n y CBT OAH 6EU sing 6 n n CBQ OAH 6EU sing 7 n n CBQ CBO 6EU doub 8 n y CBN CBO 6EU sing 9 n y CBN CBM 6EU sing 10 n n CBM CBK 6EU sing 11 n n CBD CAV 6EU sing 12 n n OAF CBK 6EU sing 13 n n OAF CBC 6EU sing 14 n n CBK OAG 6EU doub 15 n n CBB CAV 6EU doub 16 n n CAV CAM 6EU sing 17 n n CBC CAX 6EU sing 18 n n CAL OAB 6EU sing 19 n n CAL CAM 6EU sing 20 n n CAL CAK 6EU sing 21 n n OAB CAQ 6EU sing 22 n n CAS CAX 6EU doub 23 n n CAS CAK 6EU sing 24 n n CAM OAC 6EU sing 25 n n CAM CAP 6EU sing 26 n n CAX CAU 6EU sing 27 n n CAK CAJ 6EU sing 28 n n CBH CBJ 6EU doub 29 n y CBH CBE 6EU sing 30 n y OAC CAQ 6EU sing 31 n n CAQ CAY 6EU sing 32 n n CAQ OAA 6EU sing 33 n n CBJ CBL 6EU sing 34 n y CAP CAN 6EU sing 35 n n CAY CBE 6EU sing 36 n n CAU CAR 6EU sing 37 n n OAD CAR 6EU sing 38 n n CBE CBG 6EU doub 39 n y CAJ OAA 6EU sing 40 n n CAJ CAN 6EU sing 41 n n CAJ CAO 6EU sing 42 n n CAN CAT 6EU sing 43 n n CAR CAO 6EU sing 44 n n CAR CAZ 6EU sing 45 n n CBL CBI 6EU doub 46 n y CAO CAW 6EU sing 47 n n CBG CBI 6EU sing 48 n y CAZ OAE 6EU doub 49 n n CAZ CBA 6EU sing 50 n n CAW CBA 6EU doub 51 n n CBA CBF 6EU sing 52 n n CBT H1 6EU sing 53 n n CBT H2 6EU sing 54 n n CBT H3 6EU sing 55 n n CBO HBS 6EU sing 56 n n OAI HAI 6EU sing 57 n n CBR HBU 6EU sing 58 n n CBP HBT 6EU sing 59 n n CBM H4 6EU sing 60 n n CBM H5 6EU sing 61 n n CBC H6 6EU sing 62 n n CBC H7 6EU sing 63 n n CAS H8 6EU sing 64 n n CAK H9 6EU sing 65 n n CAU H10 6EU sing 66 n n CAU H11 6EU sing 67 n n OAD HAD 6EU sing 68 n n CBF H12 6EU sing 69 n n CBF H13 6EU sing 70 n n CBF H14 6EU sing 71 n n CAW H15 6EU sing 72 n n CAO H16 6EU sing 73 n n CAN H17 6EU sing 74 n n CAT H18 6EU sing 75 n n CAT H19 6EU sing 76 n n CAT H20 6EU sing 77 n n CAP H21 6EU sing 78 n n CAP H22 6EU sing 79 n n CBB H24 6EU sing 80 n n CBB H25 6EU sing 81 n n CBD H27 6EU sing 82 n n CBD H28 6EU sing 83 n n CBD H29 6EU sing 84 n n CAL H30 6EU sing 85 n n CAY H31 6EU sing 86 n n CAY H32 6EU sing 87 n n CBG HBL 6EU sing 88 n n CBI HBN 6EU sing 89 n n CBL HBP 6EU sing 90 n n CBJ HBO 6EU sing 91 n n CBH HBM 6EU sing 92 n n # _atom_sites.entry_id 7L2M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 6EU A 1 901 901 6EU 6EU . H 4 NA A 1 902 1 NA NA . I 3 6EU C 1 901 901 6EU 6EU . J 4 NA C 1 902 2 NA NA . K 3 6EU D 1 901 901 6EU 6EU . L 3 6EU B 1 901 901 6EU 6EU . M 4 NA B 1 902 3 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBT 6EU . . . G 3 99.378 132.399 119.145 1 85.86 ? CBT 6EU 901 A 1 HETATM 2 O OAH 6EU . . . G 3 100.483 132.667 120.001 1 85.86 ? OAH 6EU 901 A 1 HETATM 3 C CBQ 6EU . . . G 3 101.738 132.309 119.601 1 85.86 ? CBQ 6EU 901 A 1 HETATM 4 C CBO 6EU . . . G 3 102.115 132.484 118.279 1 85.86 ? CBO 6EU 901 A 1 HETATM 5 C CBS 6EU . . . G 3 102.627 131.783 120.513 1 85.86 ? CBS 6EU 901 A 1 HETATM 6 O OAI 6EU . . . G 3 102.252 131.615 121.808 1 85.86 ? OAI 6EU 901 A 1 HETATM 7 C CBR 6EU . . . G 3 103.901 131.426 120.107 1 85.86 ? CBR 6EU 901 A 1 HETATM 8 C CBP 6EU . . . G 3 104.28 131.598 118.784 1 85.86 ? CBP 6EU 901 A 1 HETATM 9 C CBN 6EU . . . G 3 103.391 132.134 117.863 1 85.86 ? CBN 6EU 901 A 1 HETATM 10 C CBM 6EU . . . G 3 103.769 132.332 116.41 1 85.86 ? CBM 6EU 901 A 1 HETATM 11 C CBK 6EU . . . G 3 105.256 132.476 116.175 1 85.86 ? CBK 6EU 901 A 1 HETATM 12 O OAG 6EU . . . G 3 106.018 131.536 116.321 1 85.86 ? OAG 6EU 901 A 1 HETATM 13 O OAF 6EU . . . G 3 105.811 133.745 115.734 1 85.86 ? OAF 6EU 901 A 1 HETATM 14 C CBC 6EU . . . G 3 106.271 133.881 114.389 1 85.86 ? CBC 6EU 901 A 1 HETATM 15 C CAX 6EU . . . G 3 105.404 134.899 113.699 1 85.86 ? CAX 6EU 901 A 1 HETATM 16 C CAS 6EU . . . G 3 105.485 136.164 114.136 1 85.86 ? CAS 6EU 901 A 1 HETATM 17 C CAK 6EU . . . G 3 104.709 137.345 113.615 1 85.86 ? CAK 6EU 901 A 1 HETATM 18 C CAU 6EU . . . G 3 104.492 134.418 112.594 1 85.86 ? CAU 6EU 901 A 1 HETATM 19 C CAR 6EU . . . G 3 104.298 135.445 111.492 1 85.86 ? CAR 6EU 901 A 1 HETATM 20 O OAD 6EU . . . G 3 102.995 136.01 111.607 1 85.86 ? OAD 6EU 901 A 1 HETATM 21 C CAZ 6EU . . . G 3 104.387 134.821 110.135 1 85.86 ? CAZ 6EU 901 A 1 HETATM 22 O OAE 6EU . . . G 3 103.835 133.788 109.806 1 85.86 ? OAE 6EU 901 A 1 HETATM 23 C CBA 6EU . . . G 3 105.209 135.631 109.267 1 85.86 ? CBA 6EU 901 A 1 HETATM 24 C CBF 6EU . . . G 3 105.466 135.345 107.82 1 85.86 ? CBF 6EU 901 A 1 HETATM 25 C CAW 6EU . . . G 3 105.699 136.666 109.946 1 85.86 ? CAW 6EU 901 A 1 HETATM 26 C CAO 6EU . . . G 3 105.431 136.474 111.428 1 85.86 ? CAO 6EU 901 A 1 HETATM 27 C CAJ 6EU . . . G 3 105.172 137.756 112.226 1 85.86 ? CAJ 6EU 901 A 1 HETATM 28 O OAA 6EU . . . G 3 106.405 138.461 112.323 1 85.86 ? OAA 6EU 901 A 1 HETATM 29 C CAN 6EU . . . G 3 104.145 138.716 111.63 1 85.86 ? CAN 6EU 901 A 1 HETATM 30 C CAT 6EU . . . G 3 104.749 139.696 110.627 1 85.86 ? CAT 6EU 901 A 1 HETATM 31 C CAP 6EU . . . G 3 103.447 139.477 112.755 1 85.86 ? CAP 6EU 901 A 1 HETATM 32 C CAM 6EU . . . G 3 104.412 139.767 113.896 1 85.86 ? CAM 6EU 901 A 1 HETATM 33 C CAV 6EU . . . G 3 103.793 140.67 114.924 1 85.86 ? CAV 6EU 901 A 1 HETATM 34 C CBB 6EU . . . G 3 104.026 140.458 116.204 1 85.86 ? CBB 6EU 901 A 1 HETATM 35 C CBD 6EU . . . G 3 102.923 141.813 114.497 1 85.86 ? CBD 6EU 901 A 1 HETATM 36 O OAC 6EU . . . G 3 105.599 140.344 113.391 1 85.86 ? OAC 6EU 901 A 1 HETATM 37 C CAL 6EU . . . G 3 104.93 138.504 114.558 1 85.86 ? CAL 6EU 901 A 1 HETATM 38 O OAB 6EU . . . G 3 106.341 138.674 114.611 1 85.86 ? OAB 6EU 901 A 1 HETATM 39 C CAQ 6EU . . . G 3 106.625 139.368 113.403 1 85.86 ? CAQ 6EU 901 A 1 HETATM 40 C CAY 6EU . . . G 3 108.021 139.988 113.393 1 85.86 ? CAY 6EU 901 A 1 HETATM 41 C CBE 6EU . . . G 3 109.011 139.167 112.597 1 85.86 ? CBE 6EU 901 A 1 HETATM 42 C CBG 6EU . . . G 3 109.673 139.753 111.528 1 85.86 ? CBG 6EU 901 A 1 HETATM 43 C CBI 6EU . . . G 3 110.59 139.019 110.788 1 85.86 ? CBI 6EU 901 A 1 HETATM 44 C CBL 6EU . . . G 3 110.855 137.699 111.122 1 85.86 ? CBL 6EU 901 A 1 HETATM 45 C CBJ 6EU . . . G 3 110.202 137.111 112.195 1 85.86 ? CBJ 6EU 901 A 1 HETATM 46 C CBH 6EU . . . G 3 109.287 137.846 112.934 1 85.86 ? CBH 6EU 901 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 46 #