data_7L2M
#
_model_server_result.job_id            0cv6j8_u_Xc7RarQS8R5-g 
_model_server_result.datetime_utc      '2024-11-24 03:39:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l2m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":901}' 
#
_entry.id    7L2M 
#
_exptl.entry_id    7L2M 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              628.708 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            resiniferatoxin 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7L2M 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L2M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 I N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 3 E CYS 2 1_555 E SG CYS 17 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 E SG CYS 10 E CYS 9 1_555 E SG CYS 24 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 E SG CYS 16 E CYS 15 1_555 E SG CYS 32 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 E SG CYS 45 E CYS 44 1_555 E SG CYS 59 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 E SG CYS 52 E CYS 51 1_555 E SG CYS 64 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 E SG CYS 58 E CYS 57 1_555 E SG CYS 72 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf7 F SG CYS 3 F CYS 2 1_555 F SG CYS 17 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 F SG CYS 10 F CYS 9 1_555 F SG CYS 24 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf9 F SG CYS 16 F CYS 15 1_555 F SG CYS 32 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf10 F SG CYS 45 F CYS 44 1_555 F SG CYS 59 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf11 F SG CYS 52 F CYS 51 1_555 F SG CYS 64 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf12 F SG CYS 58 F CYS 57 1_555 F SG CYS 72 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'C37 H40 O9' 
_chem_comp.formula_weight    628.708 
_chem_comp.id                6EU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              resiniferatoxin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     RTX 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAI CBS 6EU sing 1 n n 
CBR CBS 6EU doub 2 n y 
CBR CBP 6EU sing 3 n y 
CBS CBQ 6EU sing 4 n y 
CBP CBN 6EU doub 5 n y 
CBT OAH 6EU sing 6 n n 
CBQ OAH 6EU sing 7 n n 
CBQ CBO 6EU doub 8 n y 
CBN CBO 6EU sing 9 n y 
CBN CBM 6EU sing 10 n n 
CBM CBK 6EU sing 11 n n 
CBD CAV 6EU sing 12 n n 
OAF CBK 6EU sing 13 n n 
OAF CBC 6EU sing 14 n n 
CBK OAG 6EU doub 15 n n 
CBB CAV 6EU doub 16 n n 
CAV CAM 6EU sing 17 n n 
CBC CAX 6EU sing 18 n n 
CAL OAB 6EU sing 19 n n 
CAL CAM 6EU sing 20 n n 
CAL CAK 6EU sing 21 n n 
OAB CAQ 6EU sing 22 n n 
CAS CAX 6EU doub 23 n n 
CAS CAK 6EU sing 24 n n 
CAM OAC 6EU sing 25 n n 
CAM CAP 6EU sing 26 n n 
CAX CAU 6EU sing 27 n n 
CAK CAJ 6EU sing 28 n n 
CBH CBJ 6EU doub 29 n y 
CBH CBE 6EU sing 30 n y 
OAC CAQ 6EU sing 31 n n 
CAQ CAY 6EU sing 32 n n 
CAQ OAA 6EU sing 33 n n 
CBJ CBL 6EU sing 34 n y 
CAP CAN 6EU sing 35 n n 
CAY CBE 6EU sing 36 n n 
CAU CAR 6EU sing 37 n n 
OAD CAR 6EU sing 38 n n 
CBE CBG 6EU doub 39 n y 
CAJ OAA 6EU sing 40 n n 
CAJ CAN 6EU sing 41 n n 
CAJ CAO 6EU sing 42 n n 
CAN CAT 6EU sing 43 n n 
CAR CAO 6EU sing 44 n n 
CAR CAZ 6EU sing 45 n n 
CBL CBI 6EU doub 46 n y 
CAO CAW 6EU sing 47 n n 
CBG CBI 6EU sing 48 n y 
CAZ OAE 6EU doub 49 n n 
CAZ CBA 6EU sing 50 n n 
CAW CBA 6EU doub 51 n n 
CBA CBF 6EU sing 52 n n 
CBT H1 6EU sing 53 n n 
CBT H2 6EU sing 54 n n 
CBT H3 6EU sing 55 n n 
CBO HBS 6EU sing 56 n n 
OAI HAI 6EU sing 57 n n 
CBR HBU 6EU sing 58 n n 
CBP HBT 6EU sing 59 n n 
CBM H4 6EU sing 60 n n 
CBM H5 6EU sing 61 n n 
CBC H6 6EU sing 62 n n 
CBC H7 6EU sing 63 n n 
CAS H8 6EU sing 64 n n 
CAK H9 6EU sing 65 n n 
CAU H10 6EU sing 66 n n 
CAU H11 6EU sing 67 n n 
OAD HAD 6EU sing 68 n n 
CBF H12 6EU sing 69 n n 
CBF H13 6EU sing 70 n n 
CBF H14 6EU sing 71 n n 
CAW H15 6EU sing 72 n n 
CAO H16 6EU sing 73 n n 
CAN H17 6EU sing 74 n n 
CAT H18 6EU sing 75 n n 
CAT H19 6EU sing 76 n n 
CAT H20 6EU sing 77 n n 
CAP H21 6EU sing 78 n n 
CAP H22 6EU sing 79 n n 
CBB H24 6EU sing 80 n n 
CBB H25 6EU sing 81 n n 
CBD H27 6EU sing 82 n n 
CBD H28 6EU sing 83 n n 
CBD H29 6EU sing 84 n n 
CAL H30 6EU sing 85 n n 
CAY H31 6EU sing 86 n n 
CAY H32 6EU sing 87 n n 
CBG HBL 6EU sing 88 n n 
CBI HBN 6EU sing 89 n n 
CBL HBP 6EU sing 90 n n 
CBJ HBO 6EU sing 91 n n 
CBH HBM 6EU sing 92 n n 
#
_atom_sites.entry_id                     7L2M 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 6EU A 1 901 901 6EU 6EU . 
H 4 NA A 1 902 1 NA NA . 
I 3 6EU C 1 901 901 6EU 6EU . 
J 4 NA C 1 902 2 NA NA . 
K 3 6EU D 1 901 901 6EU 6EU . 
L 3 6EU B 1 901 901 6EU 6EU . 
M 4 NA B 1 902 3 NA NA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CBT 6EU . . . K 3 122.963 99.372 119.147 1 85.86 ? CBT 6EU 901 D 1 
HETATM 2 O OAH 6EU . . . K 3 122.694 100.477 120.003 1 85.86 ? OAH 6EU 901 D 1 
HETATM 3 C CBQ 6EU . . . K 3 123.052 101.732 119.603 1 85.86 ? CBQ 6EU 901 D 1 
HETATM 4 C CBO 6EU . . . K 3 122.877 102.109 118.281 1 85.86 ? CBO 6EU 901 D 1 
HETATM 5 C CBS 6EU . . . K 3 123.578 102.621 120.515 1 85.86 ? CBS 6EU 901 D 1 
HETATM 6 O OAI 6EU . . . K 3 123.746 102.246 121.81 1 85.86 ? OAI 6EU 901 D 1 
HETATM 7 C CBR 6EU . . . K 3 123.935 103.895 120.109 1 85.86 ? CBR 6EU 901 D 1 
HETATM 8 C CBP 6EU . . . K 3 123.763 104.274 118.786 1 85.86 ? CBP 6EU 901 D 1 
HETATM 9 C CBN 6EU . . . K 3 123.227 103.385 117.865 1 85.86 ? CBN 6EU 901 D 1 
HETATM 10 C CBM 6EU . . . K 3 123.029 103.763 116.412 1 85.86 ? CBM 6EU 901 D 1 
HETATM 11 C CBK 6EU . . . K 3 122.884 105.25 116.177 1 85.86 ? CBK 6EU 901 D 1 
HETATM 12 O OAG 6EU . . . K 3 123.825 106.012 116.323 1 85.86 ? OAG 6EU 901 D 1 
HETATM 13 O OAF 6EU . . . K 3 121.616 105.804 115.736 1 85.86 ? OAF 6EU 901 D 1 
HETATM 14 C CBC 6EU . . . K 3 121.48 106.265 114.391 1 85.86 ? CBC 6EU 901 D 1 
HETATM 15 C CAX 6EU . . . K 3 120.462 105.398 113.701 1 85.86 ? CAX 6EU 901 D 1 
HETATM 16 C CAS 6EU . . . K 3 119.197 105.478 114.138 1 85.86 ? CAS 6EU 901 D 1 
HETATM 17 C CAK 6EU . . . K 3 118.016 104.702 113.617 1 85.86 ? CAK 6EU 901 D 1 
HETATM 18 C CAU 6EU . . . K 3 120.943 104.485 112.596 1 85.86 ? CAU 6EU 901 D 1 
HETATM 19 C CAR 6EU . . . K 3 119.916 104.292 111.494 1 85.86 ? CAR 6EU 901 D 1 
HETATM 20 O OAD 6EU . . . K 3 119.351 102.988 111.609 1 85.86 ? OAD 6EU 901 D 1 
HETATM 21 C CAZ 6EU . . . K 3 120.54 104.381 110.137 1 85.86 ? CAZ 6EU 901 D 1 
HETATM 22 O OAE 6EU . . . K 3 121.573 103.829 109.808 1 85.86 ? OAE 6EU 901 D 1 
HETATM 23 C CBA 6EU . . . K 3 119.73 105.203 109.268 1 85.86 ? CBA 6EU 901 D 1 
HETATM 24 C CBF 6EU . . . K 3 120.016 105.459 107.822 1 85.86 ? CBF 6EU 901 D 1 
HETATM 25 C CAW 6EU . . . K 3 118.695 105.692 109.948 1 85.86 ? CAW 6EU 901 D 1 
HETATM 26 C CAO 6EU . . . K 3 118.887 105.424 111.43 1 85.86 ? CAO 6EU 901 D 1 
HETATM 27 C CAJ 6EU . . . K 3 117.605 105.165 112.228 1 85.86 ? CAJ 6EU 901 D 1 
HETATM 28 O OAA 6EU . . . K 3 116.899 106.398 112.325 1 85.86 ? OAA 6EU 901 D 1 
HETATM 29 C CAN 6EU . . . K 3 116.645 104.138 111.631 1 85.86 ? CAN 6EU 901 D 1 
HETATM 30 C CAT 6EU . . . K 3 115.665 104.741 110.628 1 85.86 ? CAT 6EU 901 D 1 
HETATM 31 C CAP 6EU . . . K 3 115.885 103.44 112.757 1 85.86 ? CAP 6EU 901 D 1 
HETATM 32 C CAM 6EU . . . K 3 115.594 104.405 113.898 1 85.86 ? CAM 6EU 901 D 1 
HETATM 33 C CAV 6EU . . . K 3 114.691 103.786 114.926 1 85.86 ? CAV 6EU 901 D 1 
HETATM 34 C CBB 6EU . . . K 3 114.904 104.019 116.206 1 85.86 ? CBB 6EU 901 D 1 
HETATM 35 C CBD 6EU . . . K 3 113.548 102.915 114.499 1 85.86 ? CBD 6EU 901 D 1 
HETATM 36 O OAC 6EU . . . K 3 115.017 105.592 113.392 1 85.86 ? OAC 6EU 901 D 1 
HETATM 37 C CAL 6EU . . . K 3 116.857 104.923 114.56 1 85.86 ? CAL 6EU 901 D 1 
HETATM 38 O OAB 6EU . . . K 3 116.687 106.334 114.613 1 85.86 ? OAB 6EU 901 D 1 
HETATM 39 C CAQ 6EU . . . K 3 115.992 106.617 113.405 1 85.86 ? CAQ 6EU 901 D 1 
HETATM 40 C CAY 6EU . . . K 3 115.372 108.013 113.394 1 85.86 ? CAY 6EU 901 D 1 
HETATM 41 C CBE 6EU . . . K 3 116.193 109.004 112.599 1 85.86 ? CBE 6EU 901 D 1 
HETATM 42 C CBG 6EU . . . K 3 115.607 109.666 111.53 1 85.86 ? CBG 6EU 901 D 1 
HETATM 43 C CBI 6EU . . . K 3 116.341 110.583 110.79 1 85.86 ? CBI 6EU 901 D 1 
HETATM 44 C CBL 6EU . . . K 3 117.661 110.848 111.124 1 85.86 ? CBL 6EU 901 D 1 
HETATM 45 C CBJ 6EU . . . K 3 118.249 110.195 112.197 1 85.86 ? CBJ 6EU 901 D 1 
HETATM 46 C CBH 6EU . . . K 3 117.514 109.28 112.936 1 85.86 ? CBH 6EU 901 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    60 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           46 
#