data_7L2O # _model_server_result.job_id 4yeW49RyNnViWH0yLnoxLA _model_server_result.datetime_utc '2024-12-26 11:10:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 7L2O # _exptl.entry_id 7L2O _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 628.708 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description resiniferatoxin _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L2O _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 390 A CYS 386 1_555 A SG CYS 394 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 B SG CYS 390 C CYS 386 1_555 B SG CYS 394 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 C SG CYS 390 D CYS 386 1_555 C SG CYS 394 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 D SG CYS 390 B CYS 386 1_555 D SG CYS 394 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C37 H40 O9' _chem_comp.formula_weight 628.708 _chem_comp.id 6EU _chem_comp.mon_nstd_flag . _chem_comp.name resiniferatoxin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RTX # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAI CBS 6EU sing 1 n n CBR CBS 6EU doub 2 n y CBR CBP 6EU sing 3 n y CBS CBQ 6EU sing 4 n y CBP CBN 6EU doub 5 n y CBT OAH 6EU sing 6 n n CBQ OAH 6EU sing 7 n n CBQ CBO 6EU doub 8 n y CBN CBO 6EU sing 9 n y CBN CBM 6EU sing 10 n n CBM CBK 6EU sing 11 n n CBD CAV 6EU sing 12 n n OAF CBK 6EU sing 13 n n OAF CBC 6EU sing 14 n n CBK OAG 6EU doub 15 n n CBB CAV 6EU doub 16 n n CAV CAM 6EU sing 17 n n CBC CAX 6EU sing 18 n n CAL OAB 6EU sing 19 n n CAL CAM 6EU sing 20 n n CAL CAK 6EU sing 21 n n OAB CAQ 6EU sing 22 n n CAS CAX 6EU doub 23 n n CAS CAK 6EU sing 24 n n CAM OAC 6EU sing 25 n n CAM CAP 6EU sing 26 n n CAX CAU 6EU sing 27 n n CAK CAJ 6EU sing 28 n n CBH CBJ 6EU doub 29 n y CBH CBE 6EU sing 30 n y OAC CAQ 6EU sing 31 n n CAQ CAY 6EU sing 32 n n CAQ OAA 6EU sing 33 n n CBJ CBL 6EU sing 34 n y CAP CAN 6EU sing 35 n n CAY CBE 6EU sing 36 n n CAU CAR 6EU sing 37 n n OAD CAR 6EU sing 38 n n CBE CBG 6EU doub 39 n y CAJ OAA 6EU sing 40 n n CAJ CAN 6EU sing 41 n n CAJ CAO 6EU sing 42 n n CAN CAT 6EU sing 43 n n CAR CAO 6EU sing 44 n n CAR CAZ 6EU sing 45 n n CBL CBI 6EU doub 46 n y CAO CAW 6EU sing 47 n n CBG CBI 6EU sing 48 n y CAZ OAE 6EU doub 49 n n CAZ CBA 6EU sing 50 n n CAW CBA 6EU doub 51 n n CBA CBF 6EU sing 52 n n CBT H1 6EU sing 53 n n CBT H2 6EU sing 54 n n CBT H3 6EU sing 55 n n CBO HBS 6EU sing 56 n n OAI HAI 6EU sing 57 n n CBR HBU 6EU sing 58 n n CBP HBT 6EU sing 59 n n CBM H4 6EU sing 60 n n CBM H5 6EU sing 61 n n CBC H6 6EU sing 62 n n CBC H7 6EU sing 63 n n CAS H8 6EU sing 64 n n CAK H9 6EU sing 65 n n CAU H10 6EU sing 66 n n CAU H11 6EU sing 67 n n OAD HAD 6EU sing 68 n n CBF H12 6EU sing 69 n n CBF H13 6EU sing 70 n n CBF H14 6EU sing 71 n n CAW H15 6EU sing 72 n n CAO H16 6EU sing 73 n n CAN H17 6EU sing 74 n n CAT H18 6EU sing 75 n n CAT H19 6EU sing 76 n n CAT H20 6EU sing 77 n n CAP H21 6EU sing 78 n n CAP H22 6EU sing 79 n n CBB H24 6EU sing 80 n n CBB H25 6EU sing 81 n n CBD H27 6EU sing 82 n n CBD H28 6EU sing 83 n n CBD H29 6EU sing 84 n n CAL H30 6EU sing 85 n n CAY H31 6EU sing 86 n n CAY H32 6EU sing 87 n n CBG HBL 6EU sing 88 n n CBI HBN 6EU sing 89 n n CBL HBP 6EU sing 90 n n CBJ HBO 6EU sing 91 n n CBH HBM 6EU sing 92 n n # _atom_sites.entry_id 7L2O _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6EU A 1 901 901 6EU 6EU . F 2 6EU C 1 901 901 6EU 6EU . G 2 6EU D 1 901 901 6EU 6EU . H 2 6EU B 1 901 901 6EU 6EU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBT 6EU . . . E 2 101.654 133.668 119.147 1 60.15 ? CBT 6EU 901 A 1 HETATM 2 O OAH 6EU . . . E 2 102.604 133.931 120.171 1 60.15 ? OAH 6EU 901 A 1 HETATM 3 C CBQ 6EU . . . E 2 103.875 133.472 120.006 1 60.15 ? CBQ 6EU 901 A 1 HETATM 4 C CBO 6EU . . . E 2 104.422 133.42 118.734 1 60.15 ? CBO 6EU 901 A 1 HETATM 5 C CBS 6EU . . . E 2 104.606 133.069 121.102 1 60.15 ? CBS 6EU 901 A 1 HETATM 6 O OAI 6EU . . . E 2 104.056 133.128 122.343 1 60.15 ? OAI 6EU 901 A 1 HETATM 7 C CBR 6EU . . . E 2 105.901 132.603 120.938 1 60.15 ? CBR 6EU 901 A 1 HETATM 8 C CBP 6EU . . . E 2 106.456 132.545 119.667 1 60.15 ? CBP 6EU 901 A 1 HETATM 9 C CBN 6EU . . . E 2 105.717 132.958 118.569 1 60.15 ? CBN 6EU 901 A 1 HETATM 10 C CBM 6EU . . . E 2 106.317 132.893 117.19 1 60.15 ? CBM 6EU 901 A 1 HETATM 11 C CBK 6EU . . . E 2 107.329 133.995 117.002 1 60.15 ? CBK 6EU 901 A 1 HETATM 12 O OAG 6EU . . . E 2 108.307 134.073 117.719 1 60.15 ? OAG 6EU 901 A 1 HETATM 13 O OAF 6EU . . . E 2 107.144 134.98 115.957 1 60.15 ? OAF 6EU 901 A 1 HETATM 14 C CBC 6EU . . . E 2 108.087 135.151 114.906 1 60.15 ? CBC 6EU 901 A 1 HETATM 15 C CAX 6EU . . . E 2 107.46 136.218 114.065 1 60.15 ? CAX 6EU 901 A 1 HETATM 16 C CAS 6EU . . . E 2 107.343 137.405 114.676 1 60.15 ? CAS 6EU 901 A 1 HETATM 17 C CAK 6EU . . . E 2 106.731 138.712 114.227 1 60.15 ? CAK 6EU 901 A 1 HETATM 18 C CAU 6EU . . . E 2 107.029 135.838 112.672 1 60.15 ? CAU 6EU 901 A 1 HETATM 19 C CAR 6EU . . . E 2 106.5 136.987 111.851 1 60.15 ? CAR 6EU 901 A 1 HETATM 20 O OAD 6EU . . . E 2 105.166 137.294 112.219 1 60.15 ? OAD 6EU 901 A 1 HETATM 21 C CAZ 6EU . . . E 2 106.457 136.622 110.405 1 60.15 ? CAZ 6EU 901 A 1 HETATM 22 O OAE 6EU . . . E 2 106.084 135.557 109.967 1 60.15 ? OAE 6EU 901 A 1 HETATM 23 C CBA 6EU . . . E 2 106.908 137.724 109.606 1 60.15 ? CBA 6EU 901 A 1 HETATM 24 C CBF 6EU . . . E 2 106.726 137.838 108.126 1 60.15 ? CBF 6EU 901 A 1 HETATM 25 C CAW 6EU . . . E 2 107.48 138.63 110.393 1 60.15 ? CAW 6EU 901 A 1 HETATM 26 C CAO 6EU . . . E 2 107.45 138.184 111.848 1 60.15 ? CAO 6EU 901 A 1 HETATM 27 C CAJ 6EU . . . E 2 107.151 139.29 112.877 1 60.15 ? CAJ 6EU 901 A 1 HETATM 28 O OAA 6EU . . . E 2 108.357 140.028 113.038 1 60.15 ? OAA 6EU 901 A 1 HETATM 29 C CAN 6EU . . . E 2 106.043 140.27 112.474 1 60.15 ? CAN 6EU 901 A 1 HETATM 30 C CAT 6EU . . . E 2 106.502 141.442 111.607 1 60.15 ? CAT 6EU 901 A 1 HETATM 31 C CAP 6EU . . . E 2 105.373 140.852 113.718 1 60.15 ? CAP 6EU 901 A 1 HETATM 32 C CAM 6EU . . . E 2 106.384 141.058 114.84 1 60.15 ? CAM 6EU 901 A 1 HETATM 33 C CAV 6EU . . . E 2 105.776 141.82 115.987 1 60.15 ? CAV 6EU 901 A 1 HETATM 34 C CBB 6EU . . . E 2 106.264 141.682 117.203 1 60.15 ? CBB 6EU 901 A 1 HETATM 35 C CBD 6EU . . . E 2 104.625 142.749 115.746 1 60.15 ? CBD 6EU 901 A 1 HETATM 36 O OAC 6EU . . . E 2 107.529 141.737 114.365 1 60.15 ? OAC 6EU 901 A 1 HETATM 37 C CAL 6EU . . . E 2 106.982 139.744 115.307 1 60.15 ? CAL 6EU 901 A 1 HETATM 38 O OAB 6EU . . . E 2 108.385 139.95 115.332 1 60.15 ? OAB 6EU 901 A 1 HETATM 39 C CAQ 6EU . . . E 2 108.582 140.802 114.215 1 60.15 ? CAQ 6EU 901 A 1 HETATM 40 C CAY 6EU . . . E 2 109.963 141.438 114.189 1 60.15 ? CAY 6EU 901 A 1 HETATM 41 C CBE 6EU . . . E 2 110.875 140.526 113.403 1 60.15 ? CBE 6EU 901 A 1 HETATM 42 C CBG 6EU . . . E 2 111.162 140.81 112.075 1 60.15 ? CBG 6EU 901 A 1 HETATM 43 C CBI 6EU . . . E 2 111.999 139.972 111.354 1 60.15 ? CBI 6EU 901 A 1 HETATM 44 C CBL 6EU . . . E 2 112.547 138.853 111.965 1 60.15 ? CBL 6EU 901 A 1 HETATM 45 C CBJ 6EU . . . E 2 112.264 138.568 113.292 1 60.15 ? CBJ 6EU 901 A 1 HETATM 46 C CBH 6EU . . . E 2 111.426 139.407 114.011 1 60.15 ? CBH 6EU 901 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 46 #