data_7L2R # _model_server_result.job_id 0wwDybp7kkywMVyYznHf7Q _model_server_result.datetime_utc '2024-12-21 12:58:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 7L2R # _exptl.entry_id 7L2R _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 600.633 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L2R _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 K N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 3 F CYS 2 1_555 B SG CYS 17 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 10 F CYS 9 1_555 B SG CYS 24 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 B SG CYS 16 F CYS 15 1_555 B SG CYS 32 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 B SG CYS 45 F CYS 44 1_555 B SG CYS 59 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 52 F CYS 51 1_555 B SG CYS 64 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 58 F CYS 57 1_555 B SG CYS 72 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 C SG CYS 3 E CYS 2 1_555 C SG CYS 17 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 C SG CYS 10 E CYS 9 1_555 C SG CYS 24 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 C SG CYS 16 E CYS 15 1_555 C SG CYS 32 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 C SG CYS 45 E CYS 44 1_555 C SG CYS 59 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 C SG CYS 52 E CYS 51 1_555 C SG CYS 64 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 C SG CYS 58 E CYS 57 1_555 C SG CYS 72 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O GLY 516 A GLY 643 1_555 I NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc2 I NA NA . A NA 803 1_555 D O GLY 516 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc3 I NA NA . A NA 803 1_555 E O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc4 I NA NA . A NA 803 1_555 F O GLY 516 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? # _chem_comp.formula 'C26 H49 O13 P' _chem_comp.formula_weight 600.633 _chem_comp.id XJ7 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 XJ7 sing 451 n n C22 C21 XJ7 sing 452 n n C21 C20 XJ7 sing 453 n n C20 C19 XJ7 sing 454 n n C19 C18 XJ7 sing 455 n n C18 C17 XJ7 sing 456 n n C17 C16 XJ7 sing 457 n n C16 C15 XJ7 sing 458 n n C15 C14 XJ7 sing 459 n n C14 C13 XJ7 sing 460 n n C13 C12 XJ7 sing 461 n n C10 C9 XJ7 sing 462 n n C9 C8 XJ7 sing 463 n n C12 C11 XJ7 sing 464 n n C8 C7 XJ7 sing 465 n n O10 C11 XJ7 doub 466 n n C11 O9 XJ7 sing 467 n n C7 O8 XJ7 doub 468 n n C7 O7 XJ7 sing 469 n n O9 C5 XJ7 sing 470 n n O7 C6 XJ7 sing 471 n n C6 C5 XJ7 sing 472 n n C5 C4 XJ7 sing 473 n n C4 O6 XJ7 sing 474 n n O5 P XJ7 doub 475 n n O6 P XJ7 sing 476 n n P O3 XJ7 sing 477 n n P O4 XJ7 sing 478 n n O3 C3 XJ7 sing 479 n n O11 C24 XJ7 sing 480 n n C3 C24 XJ7 sing 481 n n C3 C2 XJ7 sing 482 n n C24 C25 XJ7 sing 483 n n O2 C2 XJ7 sing 484 n n C2 C1 XJ7 sing 485 n n C25 O12 XJ7 sing 486 n n C25 C XJ7 sing 487 n n C1 C XJ7 sing 488 n n C1 O1 XJ7 sing 489 n n C O XJ7 sing 490 n n C10 H1 XJ7 sing 491 n n C10 H2 XJ7 sing 492 n n C10 H3 XJ7 sing 493 n n O11 H4 XJ7 sing 494 n n C16 H5 XJ7 sing 495 n n C16 H6 XJ7 sing 496 n n C17 H7 XJ7 sing 497 n n C17 H8 XJ7 sing 498 n n C19 H9 XJ7 sing 499 n n C19 H10 XJ7 sing 500 n n C20 H11 XJ7 sing 501 n n C20 H12 XJ7 sing 502 n n C21 H13 XJ7 sing 503 n n C21 H14 XJ7 sing 504 n n C23 H15 XJ7 sing 505 n n C23 H16 XJ7 sing 506 n n C23 H17 XJ7 sing 507 n n C25 H18 XJ7 sing 508 n n C1 H19 XJ7 sing 509 n n C H20 XJ7 sing 510 n n O H21 XJ7 sing 511 n n C12 H22 XJ7 sing 512 n n C12 H23 XJ7 sing 513 n n C13 H24 XJ7 sing 514 n n C13 H25 XJ7 sing 515 n n C14 H26 XJ7 sing 516 n n C14 H27 XJ7 sing 517 n n C15 H28 XJ7 sing 518 n n C15 H29 XJ7 sing 519 n n C18 H30 XJ7 sing 520 n n C18 H31 XJ7 sing 521 n n C2 H32 XJ7 sing 522 n n C22 H33 XJ7 sing 523 n n C22 H34 XJ7 sing 524 n n C24 H35 XJ7 sing 525 n n C3 H36 XJ7 sing 526 n n C4 H37 XJ7 sing 527 n n C4 H38 XJ7 sing 528 n n C5 H39 XJ7 sing 529 n n C6 H40 XJ7 sing 530 n n C6 H41 XJ7 sing 531 n n C8 H42 XJ7 sing 532 n n C8 H43 XJ7 sing 533 n n C9 H44 XJ7 sing 534 n n C9 H45 XJ7 sing 535 n n O1 H46 XJ7 sing 536 n n O12 H47 XJ7 sing 537 n n O2 H48 XJ7 sing 538 n n O4 H49 XJ7 sing 539 n n # _atom_sites.entry_id 7L2R _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 XJ7 A 1 801 801 XJ7 6ER . H 4 65I A 1 802 901 65I 65I . I 5 NA A 1 803 1 NA NA . J 4 65I F 1 901 901 65I 65I . K 3 XJ7 B 1 801 801 XJ7 6ER . L 4 65I C 1 901 901 65I 65I . M 3 XJ7 C 1 902 801 XJ7 6ER . N 3 XJ7 D 1 801 801 XJ7 6ER . O 4 65I D 1 802 901 65I 65I . P 6 HOH A 1 1001 1001 HOH HOH . Q 6 HOH B 1 1001 1001 HOH HOH . R 6 HOH C 1 1001 1001 HOH HOH . S 6 HOH D 1 1001 1001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XJ7 . . . G 3 113.897 146.615 126.027 1 67.31 ? C10 XJ7 801 A 1 HETATM 2 O O11 XJ7 . . . G 3 111.844 144.63 134.904 1 67.31 ? O11 XJ7 801 A 1 HETATM 3 C C16 XJ7 . . . G 3 113.024 141.568 123.63 1 67.31 ? C16 XJ7 801 A 1 HETATM 4 C C17 XJ7 . . . G 3 114.226 142.291 123.031 1 67.31 ? C17 XJ7 801 A 1 HETATM 5 C C19 XJ7 . . . G 3 113.174 142.722 120.784 1 67.31 ? C19 XJ7 801 A 1 HETATM 6 C C20 XJ7 . . . G 3 112.949 143.767 119.692 1 67.31 ? C20 XJ7 801 A 1 HETATM 7 C C21 XJ7 . . . G 3 112.899 143.099 118.321 1 67.31 ? C21 XJ7 801 A 1 HETATM 8 C C23 XJ7 . . . G 3 112.889 143.604 115.869 1 67.31 ? C23 XJ7 801 A 1 HETATM 9 C C25 XJ7 . . . G 3 111.048 144.123 137.069 1 67.31 ? C25 XJ7 801 A 1 HETATM 10 C C1 XJ7 . . . G 3 108.651 143.323 137.33 1 67.31 ? C1 XJ7 801 A 1 HETATM 11 C C XJ7 . . . G 3 109.798 144.138 137.941 1 67.31 ? C XJ7 801 A 1 HETATM 12 O O XJ7 . . . G 3 109.392 145.467 138.079 1 67.31 ? O XJ7 801 A 1 HETATM 13 C C11 XJ7 . . . G 3 110.302 140.117 128.172 1 67.31 ? C11 XJ7 801 A 1 HETATM 14 C C12 XJ7 . . . G 3 110.222 139.772 126.694 1 67.31 ? C12 XJ7 801 A 1 HETATM 15 C C13 XJ7 . . . G 3 111.189 140.625 125.874 1 67.31 ? C13 XJ7 801 A 1 HETATM 16 C C14 XJ7 . . . G 3 112.35 139.812 125.303 1 67.31 ? C14 XJ7 801 A 1 HETATM 17 C C15 XJ7 . . . G 3 113.47 140.74 124.831 1 67.31 ? C15 XJ7 801 A 1 HETATM 18 C C18 XJ7 . . . G 3 113.773 143.365 122.04 1 67.31 ? C18 XJ7 801 A 1 HETATM 19 C C2 XJ7 . . . G 3 108.428 143.588 135.835 1 67.31 ? C2 XJ7 801 A 1 HETATM 20 C C22 XJ7 . . . G 3 112.655 144.171 117.263 1 67.31 ? C22 XJ7 801 A 1 HETATM 21 C C24 XJ7 . . . G 3 110.679 144.55 135.662 1 67.31 ? C24 XJ7 801 A 1 HETATM 22 C C3 XJ7 . . . G 3 109.744 143.507 135.068 1 67.31 ? C3 XJ7 801 A 1 HETATM 23 C C4 XJ7 . . . G 3 110.73 141.455 131.017 1 67.31 ? C4 XJ7 801 A 1 HETATM 24 C C5 XJ7 . . . G 3 111.362 141.602 129.623 1 67.31 ? C5 XJ7 801 A 1 HETATM 25 C C6 XJ7 . . . G 3 111.948 143.005 129.478 1 67.31 ? C6 XJ7 801 A 1 HETATM 26 C C7 XJ7 . . . G 3 113.942 143.715 128.503 1 67.31 ? C7 XJ7 801 A 1 HETATM 27 C C8 XJ7 . . . G 3 114.272 145.113 127.994 1 67.31 ? C8 XJ7 801 A 1 HETATM 28 C C9 XJ7 . . . G 3 113.327 145.469 126.857 1 67.31 ? C9 XJ7 801 A 1 HETATM 29 O O1 XJ7 . . . G 3 107.468 143.671 137.989 1 67.31 ? O1 XJ7 801 A 1 HETATM 30 O O10 XJ7 . . . G 3 110.298 139.229 128.94 1 67.31 ? O10 XJ7 801 A 1 HETATM 31 O O12 XJ7 . . . G 3 111.983 145.033 137.567 1 67.31 ? O12 XJ7 801 A 1 HETATM 32 O O2 XJ7 . . . G 3 107.522 142.64 135.34 1 67.31 ? O2 XJ7 801 A 1 HETATM 33 O O3 XJ7 . . . G 3 109.557 143.776 133.71 1 67.31 ? O3 XJ7 801 A 1 HETATM 34 O O4 XJ7 . . . G 3 109.009 141.305 133.321 1 67.31 ? O4 XJ7 801 A 1 HETATM 35 O O5 XJ7 . . . G 3 107.63 142.781 132.398 1 67.31 ? O5 XJ7 801 A 1 HETATM 36 O O6 XJ7 . . . G 3 109.963 142.589 131.323 1 67.31 ? O6 XJ7 801 A 1 HETATM 37 O O7 XJ7 . . . G 3 112.689 143.142 128.307 1 67.31 ? O7 XJ7 801 A 1 HETATM 38 O O8 XJ7 . . . G 3 114.761 143.094 129.069 1 67.31 ? O8 XJ7 801 A 1 HETATM 39 O O9 XJ7 . . . G 3 110.384 141.428 128.64 1 67.31 ? O9 XJ7 801 A 1 HETATM 40 P P XJ7 . . . G 3 109.042 142.603 132.685 1 67.31 ? P XJ7 801 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 40 #