data_7L2R # _model_server_result.job_id 6iqj1scLnVtdZWN0ggy-VQ _model_server_result.datetime_utc '2024-11-14 17:28:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":802}' # _entry.id 7L2R # _exptl.entry_id 7L2R _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 481.56 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(9R,12R)-15-amino-12-hydroxy-6,12-dioxo-7,11,13-trioxa-12lambda~5~-phosphapentadecan-9-yl undecanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L2R _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N ? 4 L N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 3 F CYS 2 1_555 B SG CYS 17 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 10 F CYS 9 1_555 B SG CYS 24 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 B SG CYS 16 F CYS 15 1_555 B SG CYS 32 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 B SG CYS 45 F CYS 44 1_555 B SG CYS 59 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 52 F CYS 51 1_555 B SG CYS 64 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 58 F CYS 57 1_555 B SG CYS 72 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 C SG CYS 3 E CYS 2 1_555 C SG CYS 17 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 C SG CYS 10 E CYS 9 1_555 C SG CYS 24 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 C SG CYS 16 E CYS 15 1_555 C SG CYS 32 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 C SG CYS 45 E CYS 44 1_555 C SG CYS 59 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 C SG CYS 52 E CYS 51 1_555 C SG CYS 64 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 C SG CYS 58 E CYS 57 1_555 C SG CYS 72 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O GLY 516 A GLY 643 1_555 I NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc2 I NA NA . A NA 803 1_555 D O GLY 516 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc3 I NA NA . A NA 803 1_555 E O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc4 I NA NA . A NA 803 1_555 F O GLY 516 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? # _chem_comp.formula 'C22 H44 N O8 P' _chem_comp.formula_weight 481.56 _chem_comp.id 65I _chem_comp.mon_nstd_flag . _chem_comp.name '(9R,12R)-15-amino-12-hydroxy-6,12-dioxo-7,11,13-trioxa-12lambda~5~-phosphapentadecan-9-yl undecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C10 65I sing 1 n n C10 C9 65I sing 2 n n C9 O5 65I sing 3 n n O5 P 65I sing 4 n n O4 P 65I doub 5 n n P O3 65I sing 6 n n P O2 65I sing 7 n n O2 C8 65I sing 8 n n C8 C7 65I sing 9 n n C7 C6 65I sing 10 n n C7 O6 65I sing 11 n n O1 C6 65I sing 12 n n O1 C5 65I sing 13 n n O6 C11 65I sing 14 n n C5 O 65I doub 15 n n C5 C4 65I sing 16 n n C11 O7 65I doub 17 n n C11 C12 65I sing 18 n n C13 C12 65I sing 19 n n C13 C14 65I sing 20 n n C15 C16 65I sing 21 n n C15 C14 65I sing 22 n n C4 C3 65I sing 23 n n C16 C17 65I sing 24 n n C3 C2 65I sing 25 n n C17 C18 65I sing 26 n n C18 C19 65I sing 27 n n C2 C1 65I sing 28 n n C1 C 65I sing 29 n n C19 C20 65I sing 30 n n C20 C21 65I sing 31 n n N H1 65I sing 32 n n N H2 65I sing 33 n n C H4 65I sing 34 n n C H5 65I sing 35 n n C H6 65I sing 36 n n C1 H7 65I sing 37 n n C1 H8 65I sing 38 n n C10 H9 65I sing 39 n n C10 H10 65I sing 40 n n C12 H11 65I sing 41 n n C12 H12 65I sing 42 n n C13 H13 65I sing 43 n n C13 H14 65I sing 44 n n C14 H15 65I sing 45 n n C14 H16 65I sing 46 n n C15 H17 65I sing 47 n n C15 H18 65I sing 48 n n C16 H19 65I sing 49 n n C16 H20 65I sing 50 n n C17 H21 65I sing 51 n n C17 H22 65I sing 52 n n C18 H23 65I sing 53 n n C18 H24 65I sing 54 n n C19 H25 65I sing 55 n n C19 H26 65I sing 56 n n C2 H27 65I sing 57 n n C2 H28 65I sing 58 n n C20 H29 65I sing 59 n n C20 H30 65I sing 60 n n C21 H31 65I sing 61 n n C21 H32 65I sing 62 n n C21 H33 65I sing 63 n n C3 H34 65I sing 64 n n C3 H35 65I sing 65 n n C4 H36 65I sing 66 n n C4 H37 65I sing 67 n n C6 H38 65I sing 68 n n C6 H39 65I sing 69 n n C7 H40 65I sing 70 n n C8 H41 65I sing 71 n n C8 H42 65I sing 72 n n C9 H43 65I sing 73 n n C9 H44 65I sing 74 n n O3 H45 65I sing 75 n n # _atom_sites.entry_id 7L2R _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 XJ7 A 1 801 801 XJ7 6ER . H 4 65I A 1 802 901 65I 65I . I 5 NA A 1 803 1 NA NA . J 4 65I F 1 901 901 65I 65I . K 3 XJ7 B 1 801 801 XJ7 6ER . L 4 65I C 1 901 901 65I 65I . M 3 XJ7 C 1 902 801 XJ7 6ER . N 3 XJ7 D 1 801 801 XJ7 6ER . O 4 65I D 1 802 901 65I 65I . P 6 HOH A 1 1001 1001 HOH HOH . Q 6 HOH B 1 1001 1001 HOH HOH . R 6 HOH C 1 1001 1001 HOH HOH . S 6 HOH D 1 1001 1001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 65I . . . H 4 125.287 161.654 100.56 1 72.72 ? N 65I 802 A 1 HETATM 2 C C 65I . . . H 4 120.914 157.978 113.753 1 72.72 ? C 65I 802 A 1 HETATM 3 O O 65I . . . H 4 120.619 157.28 108.504 1 72.72 ? O 65I 802 A 1 HETATM 4 C C1 65I . . . H 4 119.717 157.404 112.999 1 72.72 ? C1 65I 802 A 1 HETATM 5 C C10 65I . . . H 4 124.776 161.839 101.906 1 72.72 ? C10 65I 802 A 1 HETATM 6 C C11 65I . . . H 4 124.124 158.289 109.27 1 72.72 ? C11 65I 802 A 1 HETATM 7 C C12 65I . . . H 4 124.355 157.128 110.226 1 72.72 ? C12 65I 802 A 1 HETATM 8 C C13 65I . . . H 4 124.37 155.774 109.51 1 72.72 ? C13 65I 802 A 1 HETATM 9 C C14 65I . . . H 4 123.705 154.695 110.364 1 72.72 ? C14 65I 802 A 1 HETATM 10 C C15 65I . . . H 4 124.228 153.274 110.084 1 72.72 ? C15 65I 802 A 1 HETATM 11 C C16 65I . . . H 4 124.754 152.615 111.363 1 72.72 ? C16 65I 802 A 1 HETATM 12 C C17 65I . . . H 4 124.892 151.1 111.168 1 72.72 ? C17 65I 802 A 1 HETATM 13 C C18 65I . . . H 4 125.545 150.425 112.374 1 72.72 ? C18 65I 802 A 1 HETATM 14 C C19 65I . . . H 4 124.767 150.69 113.667 1 72.72 ? C19 65I 802 A 1 HETATM 15 C C2 65I . . . H 4 120.058 157.309 111.507 1 72.72 ? C2 65I 802 A 1 HETATM 16 C C20 65I . . . H 4 124.819 149.543 114.66 1 72.72 ? C20 65I 802 A 1 HETATM 17 C C21 65I . . . H 4 123.84 149.876 115.776 1 72.72 ? C21 65I 802 A 1 HETATM 18 C C3 65I . . . H 4 118.867 157.579 110.579 1 72.72 ? C3 65I 802 A 1 HETATM 19 C C4 65I . . . H 4 119.157 158.75 109.639 1 72.72 ? C4 65I 802 A 1 HETATM 20 C C5 65I . . . H 4 120.17 158.371 108.56 1 72.72 ? C5 65I 802 A 1 HETATM 21 C C6 65I . . . H 4 121.743 160.009 107.899 1 72.72 ? C6 65I 802 A 1 HETATM 22 C C7 65I . . . H 4 122.934 159.222 107.37 1 72.72 ? C7 65I 802 A 1 HETATM 23 C C8 65I . . . H 4 122.611 158.618 106.015 1 72.72 ? C8 65I 802 A 1 HETATM 24 C C9 65I . . . H 4 124.625 160.485 102.592 1 72.72 ? C9 65I 802 A 1 HETATM 25 O O1 65I . . . H 4 120.558 159.321 107.614 1 72.72 ? O1 65I 802 A 1 HETATM 26 O O2 65I . . . H 4 121.889 159.53 105.253 1 72.72 ? O2 65I 802 A 1 HETATM 27 O O3 65I . . . H 4 122.485 158.43 103.031 1 72.72 ? O3 65I 802 A 1 HETATM 28 O O4 65I . . . H 4 121.264 160.31 102.896 1 72.72 ? O4 65I 802 A 1 HETATM 29 O O5 65I . . . H 4 123.731 160.613 103.659 1 72.72 ? O5 65I 802 A 1 HETATM 30 O O6 65I . . . H 4 123.182 158.158 108.241 1 72.72 ? O6 65I 802 A 1 HETATM 31 O O7 65I . . . H 4 124.736 159.284 109.442 1 72.72 ? O7 65I 802 A 1 HETATM 32 P P 65I . . . H 4 122.341 159.722 103.688 1 72.72 ? P 65I 802 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #