data_7L2R
#
_model_server_result.job_id            PoXK9pCTD7Y5O1VbIcfWUg 
_model_server_result.datetime_utc      '2024-12-21 12:35:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l2r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":901}' 
#
_entry.id    7L2R 
#
_exptl.entry_id    7L2R 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              481.56 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(9R,12R)-15-amino-12-hydroxy-6,12-dioxo-7,11,13-trioxa-12lambda~5~-phosphapentadecan-9-yl undecanoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7L2R 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L2R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 J N N 
? 4 L N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 3 F CYS 2 1_555 B SG CYS 17 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 10 F CYS 9 1_555 B SG CYS 24 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 B SG CYS 16 F CYS 15 1_555 B SG CYS 32 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 B SG CYS 45 F CYS 44 1_555 B SG CYS 59 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 52 F CYS 51 1_555 B SG CYS 64 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 B SG CYS 58 F CYS 57 1_555 B SG CYS 72 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 C SG CYS 3 E CYS 2 1_555 C SG CYS 17 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 C SG CYS 10 E CYS 9 1_555 C SG CYS 24 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf9 C SG CYS 16 E CYS 15 1_555 C SG CYS 32 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 C SG CYS 45 E CYS 44 1_555 C SG CYS 59 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 C SG CYS 52 E CYS 51 1_555 C SG CYS 64 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 C SG CYS 58 E CYS 57 1_555 C SG CYS 72 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A O GLY 516 A GLY 643 1_555 I NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc2 I NA NA . A NA 803 1_555 D O GLY 516 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc3 I NA NA . A NA 803 1_555 E O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc4 I NA NA . A NA 803 1_555 F O GLY 516 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
#
_chem_comp.formula           'C22 H44 N O8 P' 
_chem_comp.formula_weight    481.56 
_chem_comp.id                65I 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(9R,12R)-15-amino-12-hydroxy-6,12-dioxo-7,11,13-trioxa-12lambda~5~-phosphapentadecan-9-yl undecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C10 65I sing 1 n n 
C10 C9 65I sing 2 n n 
C9 O5 65I sing 3 n n 
O5 P 65I sing 4 n n 
O4 P 65I doub 5 n n 
P O3 65I sing 6 n n 
P O2 65I sing 7 n n 
O2 C8 65I sing 8 n n 
C8 C7 65I sing 9 n n 
C7 C6 65I sing 10 n n 
C7 O6 65I sing 11 n n 
O1 C6 65I sing 12 n n 
O1 C5 65I sing 13 n n 
O6 C11 65I sing 14 n n 
C5 O 65I doub 15 n n 
C5 C4 65I sing 16 n n 
C11 O7 65I doub 17 n n 
C11 C12 65I sing 18 n n 
C13 C12 65I sing 19 n n 
C13 C14 65I sing 20 n n 
C15 C16 65I sing 21 n n 
C15 C14 65I sing 22 n n 
C4 C3 65I sing 23 n n 
C16 C17 65I sing 24 n n 
C3 C2 65I sing 25 n n 
C17 C18 65I sing 26 n n 
C18 C19 65I sing 27 n n 
C2 C1 65I sing 28 n n 
C1 C 65I sing 29 n n 
C19 C20 65I sing 30 n n 
C20 C21 65I sing 31 n n 
N H1 65I sing 32 n n 
N H2 65I sing 33 n n 
C H4 65I sing 34 n n 
C H5 65I sing 35 n n 
C H6 65I sing 36 n n 
C1 H7 65I sing 37 n n 
C1 H8 65I sing 38 n n 
C10 H9 65I sing 39 n n 
C10 H10 65I sing 40 n n 
C12 H11 65I sing 41 n n 
C12 H12 65I sing 42 n n 
C13 H13 65I sing 43 n n 
C13 H14 65I sing 44 n n 
C14 H15 65I sing 45 n n 
C14 H16 65I sing 46 n n 
C15 H17 65I sing 47 n n 
C15 H18 65I sing 48 n n 
C16 H19 65I sing 49 n n 
C16 H20 65I sing 50 n n 
C17 H21 65I sing 51 n n 
C17 H22 65I sing 52 n n 
C18 H23 65I sing 53 n n 
C18 H24 65I sing 54 n n 
C19 H25 65I sing 55 n n 
C19 H26 65I sing 56 n n 
C2 H27 65I sing 57 n n 
C2 H28 65I sing 58 n n 
C20 H29 65I sing 59 n n 
C20 H30 65I sing 60 n n 
C21 H31 65I sing 61 n n 
C21 H32 65I sing 62 n n 
C21 H33 65I sing 63 n n 
C3 H34 65I sing 64 n n 
C3 H35 65I sing 65 n n 
C4 H36 65I sing 66 n n 
C4 H37 65I sing 67 n n 
C6 H38 65I sing 68 n n 
C6 H39 65I sing 69 n n 
C7 H40 65I sing 70 n n 
C8 H41 65I sing 71 n n 
C8 H42 65I sing 72 n n 
C9 H43 65I sing 73 n n 
C9 H44 65I sing 74 n n 
O3 H45 65I sing 75 n n 
#
_atom_sites.entry_id                     7L2R 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 XJ7 A 1 801 801 XJ7 6ER . 
H 4 65I A 1 802 901 65I 65I . 
I 5 NA A 1 803 1 NA NA . 
J 4 65I F 1 901 901 65I 65I . 
K 3 XJ7 B 1 801 801 XJ7 6ER . 
L 4 65I C 1 901 901 65I 65I . 
M 3 XJ7 C 1 902 801 XJ7 6ER . 
N 3 XJ7 D 1 801 801 XJ7 6ER . 
O 4 65I D 1 802 901 65I 65I . 
P 6 HOH A 1 1001 1001 HOH HOH . 
Q 6 HOH B 1 1001 1001 HOH HOH . 
R 6 HOH C 1 1001 1001 HOH HOH . 
S 6 HOH D 1 1001 1001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N 65I . . . L 4 162.063 145.994 101.453 1 73.94 ? N 65I 901 C 1 
HETATM 2 C C 65I . . . L 4 157.209 150.19 114.174 1 73.94 ? C 65I 901 C 1 
HETATM 3 O O 65I . . . L 4 157.111 150.872 108.914 1 73.94 ? O 65I 901 C 1 
HETATM 4 C C1 65I . . . L 4 156.988 151.493 113.408 1 73.94 ? C1 65I 901 C 1 
HETATM 5 C C10 65I . . . L 4 162.033 146.433 102.835 1 73.94 ? C10 65I 901 C 1 
HETATM 6 C C11 65I . . . L 4 158.439 147.481 109.368 1 73.94 ? C11 65I 901 C 1 
HETATM 7 C C12 65I . . . L 4 157.335 147.114 110.347 1 73.94 ? C12 65I 901 C 1 
HETATM 8 C C13 65I . . . L 4 155.96 147.535 109.849 1 73.94 ? C13 65I 901 C 1 
HETATM 9 C C14 65I . . . L 4 155.025 147.573 111.052 1 73.94 ? C14 65I 901 C 1 
HETATM 10 C C15 65I . . . L 4 153.554 147.368 110.675 1 73.94 ? C15 65I 901 C 1 
HETATM 11 C C16 65I . . . L 4 152.864 146.681 111.85 1 73.94 ? C16 65I 901 C 1 
HETATM 12 C C17 65I . . . L 4 151.344 146.763 111.706 1 73.94 ? C17 65I 901 C 1 
HETATM 13 C C18 65I . . . L 4 150.623 146.177 112.916 1 73.94 ? C18 65I 901 C 1 
HETATM 14 C C19 65I . . . L 4 150.87 147.024 114.163 1 73.94 ? C19 65I 901 C 1 
HETATM 15 C C2 65I . . . L 4 156.904 151.215 111.904 1 73.94 ? C2 65I 901 C 1 
HETATM 16 C C20 65I . . . L 4 149.634 147.1 115.042 1 73.94 ? C20 65I 901 C 1 
HETATM 17 C C21 65I . . . L 4 149.913 148.123 116.133 1 73.94 ? C21 65I 901 C 1 
HETATM 18 C C3 65I . . . L 4 157.118 152.491 111.084 1 73.94 ? C3 65I 901 C 1 
HETATM 19 C C4 65I . . . L 4 158.368 152.385 110.209 1 73.94 ? C4 65I 901 C 1 
HETATM 20 C C5 65I . . . L 4 158.133 151.453 109.027 1 73.94 ? C5 65I 901 C 1 
HETATM 21 C C6 65I . . . L 4 159.929 150.167 108.247 1 73.94 ? C6 65I 901 C 1 
HETATM 22 C C7 65I . . . L 4 159.278 148.944 107.615 1 73.94 ? C7 65I 901 C 1 
HETATM 23 C C8 65I . . . L 4 158.673 149.32 106.274 1 73.94 ? C8 65I 901 C 1 
HETATM 24 C C9 65I . . . L 4 160.646 146.964 103.182 1 73.94 ? C9 65I 901 C 1 
HETATM 25 O O1 65I . . . L 4 159.132 151.299 108.069 1 73.94 ? O1 65I 901 C 1 
HETATM 26 O O2 65I . . . L 4 159.637 149.97 105.513 1 73.94 ? O2 65I 901 C 1 
HETATM 27 O O3 65I . . . L 4 158.665 149.116 103.32 1 73.94 ? O3 65I 901 C 1 
HETATM 28 O O4 65I . . . L 4 160.546 150.342 103.145 1 73.94 ? O4 65I 901 C 1 
HETATM 29 O O5 65I . . . L 4 160.763 147.95 104.168 1 73.94 ? O5 65I 901 C 1 
HETATM 30 O O6 65I . . . L 4 158.23 148.494 108.424 1 73.94 ? O6 65I 901 C 1 
HETATM 31 O O7 65I . . . L 4 159.457 146.889 109.443 1 73.94 ? O7 65I 901 C 1 
HETATM 32 P P 65I . . . L 4 159.915 149.355 104.019 1 73.94 ? P 65I 901 C 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           503 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           32 
#