data_7L2R
#
_model_server_result.job_id            zER35GQQo_IyzPGSdoJKWQ 
_model_server_result.datetime_utc      '2024-11-14 17:31:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l2r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":902}' 
#
_entry.id    7L2R 
#
_exptl.entry_id    7L2R 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              600.633 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7L2R 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L2R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 K N N 
? 3 M N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 3 F CYS 2 1_555 B SG CYS 17 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 10 F CYS 9 1_555 B SG CYS 24 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 B SG CYS 16 F CYS 15 1_555 B SG CYS 32 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 B SG CYS 45 F CYS 44 1_555 B SG CYS 59 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 52 F CYS 51 1_555 B SG CYS 64 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 B SG CYS 58 F CYS 57 1_555 B SG CYS 72 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 C SG CYS 3 E CYS 2 1_555 C SG CYS 17 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 C SG CYS 10 E CYS 9 1_555 C SG CYS 24 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf9 C SG CYS 16 E CYS 15 1_555 C SG CYS 32 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 C SG CYS 45 E CYS 44 1_555 C SG CYS 59 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 C SG CYS 52 E CYS 51 1_555 C SG CYS 64 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 C SG CYS 58 E CYS 57 1_555 C SG CYS 72 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A O GLY 516 A GLY 643 1_555 I NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc2 I NA NA . A NA 803 1_555 D O GLY 516 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc3 I NA NA . A NA 803 1_555 E O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc4 I NA NA . A NA 803 1_555 F O GLY 516 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
#
_chem_comp.formula           'C26 H49 O13 P' 
_chem_comp.formula_weight    600.633 
_chem_comp.id                XJ7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C22 XJ7 sing 451 n n 
C22 C21 XJ7 sing 452 n n 
C21 C20 XJ7 sing 453 n n 
C20 C19 XJ7 sing 454 n n 
C19 C18 XJ7 sing 455 n n 
C18 C17 XJ7 sing 456 n n 
C17 C16 XJ7 sing 457 n n 
C16 C15 XJ7 sing 458 n n 
C15 C14 XJ7 sing 459 n n 
C14 C13 XJ7 sing 460 n n 
C13 C12 XJ7 sing 461 n n 
C10 C9 XJ7 sing 462 n n 
C9 C8 XJ7 sing 463 n n 
C12 C11 XJ7 sing 464 n n 
C8 C7 XJ7 sing 465 n n 
O10 C11 XJ7 doub 466 n n 
C11 O9 XJ7 sing 467 n n 
C7 O8 XJ7 doub 468 n n 
C7 O7 XJ7 sing 469 n n 
O9 C5 XJ7 sing 470 n n 
O7 C6 XJ7 sing 471 n n 
C6 C5 XJ7 sing 472 n n 
C5 C4 XJ7 sing 473 n n 
C4 O6 XJ7 sing 474 n n 
O5 P XJ7 doub 475 n n 
O6 P XJ7 sing 476 n n 
P O3 XJ7 sing 477 n n 
P O4 XJ7 sing 478 n n 
O3 C3 XJ7 sing 479 n n 
O11 C24 XJ7 sing 480 n n 
C3 C24 XJ7 sing 481 n n 
C3 C2 XJ7 sing 482 n n 
C24 C25 XJ7 sing 483 n n 
O2 C2 XJ7 sing 484 n n 
C2 C1 XJ7 sing 485 n n 
C25 O12 XJ7 sing 486 n n 
C25 C XJ7 sing 487 n n 
C1 C XJ7 sing 488 n n 
C1 O1 XJ7 sing 489 n n 
C O XJ7 sing 490 n n 
C10 H1 XJ7 sing 491 n n 
C10 H2 XJ7 sing 492 n n 
C10 H3 XJ7 sing 493 n n 
O11 H4 XJ7 sing 494 n n 
C16 H5 XJ7 sing 495 n n 
C16 H6 XJ7 sing 496 n n 
C17 H7 XJ7 sing 497 n n 
C17 H8 XJ7 sing 498 n n 
C19 H9 XJ7 sing 499 n n 
C19 H10 XJ7 sing 500 n n 
C20 H11 XJ7 sing 501 n n 
C20 H12 XJ7 sing 502 n n 
C21 H13 XJ7 sing 503 n n 
C21 H14 XJ7 sing 504 n n 
C23 H15 XJ7 sing 505 n n 
C23 H16 XJ7 sing 506 n n 
C23 H17 XJ7 sing 507 n n 
C25 H18 XJ7 sing 508 n n 
C1 H19 XJ7 sing 509 n n 
C H20 XJ7 sing 510 n n 
O H21 XJ7 sing 511 n n 
C12 H22 XJ7 sing 512 n n 
C12 H23 XJ7 sing 513 n n 
C13 H24 XJ7 sing 514 n n 
C13 H25 XJ7 sing 515 n n 
C14 H26 XJ7 sing 516 n n 
C14 H27 XJ7 sing 517 n n 
C15 H28 XJ7 sing 518 n n 
C15 H29 XJ7 sing 519 n n 
C18 H30 XJ7 sing 520 n n 
C18 H31 XJ7 sing 521 n n 
C2 H32 XJ7 sing 522 n n 
C22 H33 XJ7 sing 523 n n 
C22 H34 XJ7 sing 524 n n 
C24 H35 XJ7 sing 525 n n 
C3 H36 XJ7 sing 526 n n 
C4 H37 XJ7 sing 527 n n 
C4 H38 XJ7 sing 528 n n 
C5 H39 XJ7 sing 529 n n 
C6 H40 XJ7 sing 530 n n 
C6 H41 XJ7 sing 531 n n 
C8 H42 XJ7 sing 532 n n 
C8 H43 XJ7 sing 533 n n 
C9 H44 XJ7 sing 534 n n 
C9 H45 XJ7 sing 535 n n 
O1 H46 XJ7 sing 536 n n 
O12 H47 XJ7 sing 537 n n 
O2 H48 XJ7 sing 538 n n 
O4 H49 XJ7 sing 539 n n 
#
_atom_sites.entry_id                     7L2R 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 XJ7 A 1 801 801 XJ7 6ER . 
H 4 65I A 1 802 901 65I 65I . 
I 5 NA A 1 803 1 NA NA . 
J 4 65I F 1 901 901 65I 65I . 
K 3 XJ7 B 1 801 801 XJ7 6ER . 
L 4 65I C 1 901 901 65I 65I . 
M 3 XJ7 C 1 902 801 XJ7 6ER . 
N 3 XJ7 D 1 801 801 XJ7 6ER . 
O 4 65I D 1 802 901 65I 65I . 
P 6 HOH A 1 1001 1001 HOH HOH . 
Q 6 HOH B 1 1001 1001 HOH HOH . 
R 6 HOH C 1 1001 1001 HOH HOH . 
S 6 HOH D 1 1001 1001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 XJ7 . . . M 3 158.112 124.975 125.994 1 67.13 ? C10 XJ7 902 C 1 
HETATM 2 O O11 XJ7 . . . M 3 160.032 126.761 134.519 1 67.13 ? O11 XJ7 902 C 1 
HETATM 3 C C16 XJ7 . . . M 3 158.575 129.879 123.72 1 67.13 ? C16 XJ7 902 C 1 
HETATM 4 C C17 XJ7 . . . M 3 157.317 129.343 123.05 1 67.13 ? C17 XJ7 902 C 1 
HETATM 5 C C19 XJ7 . . . M 3 158.416 128.664 120.885 1 67.13 ? C19 XJ7 902 C 1 
HETATM 6 C C20 XJ7 . . . M 3 158.326 127.667 119.731 1 67.13 ? C20 XJ7 902 C 1 
HETATM 7 C C21 XJ7 . . . M 3 158.745 128.367 118.442 1 67.13 ? C21 XJ7 902 C 1 
HETATM 8 C C23 XJ7 . . . M 3 159.167 128.049 116.006 1 67.13 ? C23 XJ7 902 C 1 
HETATM 9 C C25 XJ7 . . . M 3 160.476 127.45 136.716 1 67.13 ? C25 XJ7 902 C 1 
HETATM 10 C C1 XJ7 . . . M 3 162.804 128.4 137.248 1 67.13 ? C1 XJ7 902 C 1 
HETATM 11 C C XJ7 . . . M 3 161.563 127.658 137.767 1 67.13 ? C XJ7 902 C 1 
HETATM 12 O O XJ7 . . . M 3 161.939 126.397 138.216 1 67.13 ? O XJ7 902 C 1 
HETATM 13 C C11 XJ7 . . . M 3 161.48 131.317 128.284 1 67.13 ? C11 XJ7 902 C 1 
HETATM 14 C C12 XJ7 . . . M 3 161.42 131.579 126.784 1 67.13 ? C12 XJ7 902 C 1 
HETATM 15 C C13 XJ7 . . . M 3 160.275 130.814 126.125 1 67.13 ? C13 XJ7 902 C 1 
HETATM 16 C C14 XJ7 . . . M 3 159.395 131.724 125.277 1 67.13 ? C14 XJ7 902 C 1 
HETATM 17 C C15 XJ7 . . . M 3 158.189 130.939 124.751 1 67.13 ? C15 XJ7 902 C 1 
HETATM 18 C C18 XJ7 . . . M 3 157.657 128.176 122.122 1 67.13 ? C18 XJ7 902 C 1 
HETATM 19 C C2 XJ7 . . . M 3 163.204 128.113 135.796 1 67.13 ? C2 XJ7 902 C 1 
HETATM 20 C C22 XJ7 . . . M 3 158.728 127.365 117.296 1 67.13 ? C22 XJ7 902 C 1 
HETATM 21 C C24 XJ7 . . . M 3 161.085 126.982 135.41 1 67.13 ? C24 XJ7 902 C 1 
HETATM 22 C C3 XJ7 . . . M 3 161.996 128.074 134.873 1 67.13 ? C3 XJ7 902 C 1 
HETATM 23 C C4 XJ7 . . . M 3 161.178 130.163 131.182 1 67.13 ? C4 XJ7 902 C 1 
HETATM 24 C C5 XJ7 . . . M 3 160.349 130.067 129.901 1 67.13 ? C5 XJ7 902 C 1 
HETATM 25 C C6 XJ7 . . . M 3 159.518 128.779 129.935 1 67.13 ? C6 XJ7 902 C 1 
HETATM 26 C C7 XJ7 . . . M 3 158.091 128.026 128.22 1 67.13 ? C7 XJ7 902 C 1 
HETATM 27 C C8 XJ7 . . . M 3 157.617 126.661 127.739 1 67.13 ? C8 XJ7 902 C 1 
HETATM 28 C C9 XJ7 . . . M 3 158.727 126.038 126.903 1 67.13 ? C9 XJ7 902 C 1 
HETATM 29 O O1 XJ7 . . . M 3 163.89 128.013 138.041 1 67.13 ? O1 XJ7 902 C 1 
HETATM 30 O O10 XJ7 . . . M 3 161.763 132.202 129.005 1 67.13 ? O10 XJ7 902 C 1 
HETATM 31 O O12 XJ7 . . . M 3 159.565 126.489 137.166 1 67.13 ? O12 XJ7 902 C 1 
HETATM 32 O O2 XJ7 . . . M 3 164.082 129.136 135.421 1 67.13 ? O2 XJ7 902 C 1 
HETATM 33 O O3 XJ7 . . . M 3 162.362 127.779 133.553 1 67.13 ? O3 XJ7 902 C 1 
HETATM 34 O O4 XJ7 . . . M 3 163.099 130.181 133.342 1 67.13 ? O4 XJ7 902 C 1 
HETATM 35 O O5 XJ7 . . . M 3 164.395 128.686 132.316 1 67.13 ? O5 XJ7 902 C 1 
HETATM 36 O O6 XJ7 . . . M 3 162.142 129.151 131.201 1 67.13 ? O6 XJ7 902 C 1 
HETATM 37 O O7 XJ7 . . . M 3 159.401 128.231 128.652 1 67.13 ? O7 XJ7 902 C 1 
HETATM 38 O O8 XJ7 . . . M 3 157.337 128.925 128.232 1 67.13 ? O8 XJ7 902 C 1 
HETATM 39 O O9 XJ7 . . . M 3 161.212 130.054 128.807 1 67.13 ? O9 XJ7 902 C 1 
HETATM 40 P P XJ7 . . . M 3 162.994 128.948 132.59 1 67.13 ? P XJ7 902 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#