data_7L2S # _model_server_result.job_id gZ4MPxfOqtJtdZHC5mMBWw _model_server_result.datetime_utc '2024-11-14 17:54:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 7L2S # _exptl.entry_id 7L2S _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 600.633 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L2S _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 J N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 516 D GLY 643 1_555 I NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 B O GLY 516 A GLY 643 1_555 I NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 I NA NA . A NA 803 1_555 C O GLY 516 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc4 I NA NA . A NA 803 1_555 D O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? # _chem_comp.formula 'C26 H49 O13 P' _chem_comp.formula_weight 600.633 _chem_comp.id XJ7 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 XJ7 sing 467 n n C22 C21 XJ7 sing 468 n n C21 C20 XJ7 sing 469 n n C20 C19 XJ7 sing 470 n n C19 C18 XJ7 sing 471 n n C18 C17 XJ7 sing 472 n n C17 C16 XJ7 sing 473 n n C16 C15 XJ7 sing 474 n n C15 C14 XJ7 sing 475 n n C14 C13 XJ7 sing 476 n n C13 C12 XJ7 sing 477 n n C10 C9 XJ7 sing 478 n n C9 C8 XJ7 sing 479 n n C12 C11 XJ7 sing 480 n n C8 C7 XJ7 sing 481 n n O10 C11 XJ7 doub 482 n n C11 O9 XJ7 sing 483 n n C7 O8 XJ7 doub 484 n n C7 O7 XJ7 sing 485 n n O9 C5 XJ7 sing 486 n n O7 C6 XJ7 sing 487 n n C6 C5 XJ7 sing 488 n n C5 C4 XJ7 sing 489 n n C4 O6 XJ7 sing 490 n n O5 P XJ7 doub 491 n n O6 P XJ7 sing 492 n n P O3 XJ7 sing 493 n n P O4 XJ7 sing 494 n n O3 C3 XJ7 sing 495 n n O11 C24 XJ7 sing 496 n n C3 C24 XJ7 sing 497 n n C3 C2 XJ7 sing 498 n n C24 C25 XJ7 sing 499 n n O2 C2 XJ7 sing 500 n n C2 C1 XJ7 sing 501 n n C25 O12 XJ7 sing 502 n n C25 C XJ7 sing 503 n n C1 C XJ7 sing 504 n n C1 O1 XJ7 sing 505 n n C O XJ7 sing 506 n n C10 H1 XJ7 sing 507 n n C10 H2 XJ7 sing 508 n n C10 H3 XJ7 sing 509 n n O11 H4 XJ7 sing 510 n n C16 H5 XJ7 sing 511 n n C16 H6 XJ7 sing 512 n n C17 H7 XJ7 sing 513 n n C17 H8 XJ7 sing 514 n n C19 H9 XJ7 sing 515 n n C19 H10 XJ7 sing 516 n n C20 H11 XJ7 sing 517 n n C20 H12 XJ7 sing 518 n n C21 H13 XJ7 sing 519 n n C21 H14 XJ7 sing 520 n n C23 H15 XJ7 sing 521 n n C23 H16 XJ7 sing 522 n n C23 H17 XJ7 sing 523 n n C25 H18 XJ7 sing 524 n n C1 H19 XJ7 sing 525 n n C H20 XJ7 sing 526 n n O H21 XJ7 sing 527 n n C12 H22 XJ7 sing 528 n n C12 H23 XJ7 sing 529 n n C13 H24 XJ7 sing 530 n n C13 H25 XJ7 sing 531 n n C14 H26 XJ7 sing 532 n n C14 H27 XJ7 sing 533 n n C15 H28 XJ7 sing 534 n n C15 H29 XJ7 sing 535 n n C18 H30 XJ7 sing 536 n n C18 H31 XJ7 sing 537 n n C2 H32 XJ7 sing 538 n n C22 H33 XJ7 sing 539 n n C22 H34 XJ7 sing 540 n n C24 H35 XJ7 sing 541 n n C3 H36 XJ7 sing 542 n n C4 H37 XJ7 sing 543 n n C4 H38 XJ7 sing 544 n n C5 H39 XJ7 sing 545 n n C6 H40 XJ7 sing 546 n n C6 H41 XJ7 sing 547 n n C8 H42 XJ7 sing 548 n n C8 H43 XJ7 sing 549 n n C9 H44 XJ7 sing 550 n n C9 H45 XJ7 sing 551 n n O1 H46 XJ7 sing 552 n n O12 H47 XJ7 sing 553 n n O2 H48 XJ7 sing 554 n n O4 H49 XJ7 sing 555 n n # _atom_sites.entry_id 7L2S _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 XJ7 D 1 801 801 XJ7 6ER . F 3 6IY D 1 802 901 6IY 6IY . G 2 XJ7 A 1 801 801 XJ7 6ER . H 3 6IY A 1 802 901 6IY 6IY . I 4 NA A 1 803 1 NA NA . J 2 XJ7 B 1 801 801 XJ7 6ER . K 3 6IY B 1 802 901 6IY 6IY . L 3 6IY C 1 901 901 6IY 6IY . M 2 XJ7 C 1 902 801 XJ7 6ER . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XJ7 . . . G 2 114.414 146.785 126.564 1 52.49 ? C10 XJ7 801 A 1 HETATM 2 O O11 XJ7 . . . G 2 111.944 143.917 134.905 1 52.49 ? O11 XJ7 801 A 1 HETATM 3 C C16 XJ7 . . . G 2 114.25 141.355 124.482 1 52.49 ? C16 XJ7 801 A 1 HETATM 4 C C17 XJ7 . . . G 2 113.727 142.543 123.684 1 52.49 ? C17 XJ7 801 A 1 HETATM 5 C C19 XJ7 . . . G 2 113.501 143.542 121.405 1 52.49 ? C19 XJ7 801 A 1 HETATM 6 C C20 XJ7 . . . G 2 113.84 143.327 119.927 1 52.49 ? C20 XJ7 801 A 1 HETATM 7 C C21 XJ7 . . . G 2 112.936 144.134 118.998 1 52.49 ? C21 XJ7 801 A 1 HETATM 8 C C23 XJ7 . . . G 2 112.782 144.566 116.555 1 52.49 ? C23 XJ7 801 A 1 HETATM 9 C C25 XJ7 . . . G 2 111.652 144.615 137.115 1 52.49 ? C25 XJ7 801 A 1 HETATM 10 C C1 XJ7 . . . G 2 109.461 144.077 138.156 1 52.49 ? C1 XJ7 801 A 1 HETATM 11 C C XJ7 . . . G 2 110.649 145.025 138.174 1 52.49 ? C XJ7 801 A 1 HETATM 12 O O XJ7 . . . G 2 110.219 146.322 137.898 1 52.49 ? O XJ7 801 A 1 HETATM 13 C C11 XJ7 . . . G 2 109.969 140.833 128.409 1 52.49 ? C11 XJ7 801 A 1 HETATM 14 C C12 XJ7 . . . G 2 111.012 140.058 127.597 1 52.49 ? C12 XJ7 801 A 1 HETATM 15 C C13 XJ7 . . . G 2 110.908 140.398 126.118 1 52.49 ? C13 XJ7 801 A 1 HETATM 16 C C14 XJ7 . . . G 2 112.215 140.084 125.357 1 52.49 ? C14 XJ7 801 A 1 HETATM 17 C C15 XJ7 . . . G 2 113.328 141.073 125.674 1 52.49 ? C15 XJ7 801 A 1 HETATM 18 C C18 XJ7 . . . G 2 114.234 142.505 122.242 1 52.49 ? C18 XJ7 801 A 1 HETATM 19 C C2 XJ7 . . . G 2 108.767 144.13 136.8 1 52.49 ? C2 XJ7 801 A 1 HETATM 20 C C22 XJ7 . . . G 2 112.921 143.479 117.62 1 52.49 ? C22 XJ7 801 A 1 HETATM 21 C C24 XJ7 . . . G 2 111.018 144.54 135.739 1 52.49 ? C24 XJ7 801 A 1 HETATM 22 C C3 XJ7 . . . G 2 109.726 143.743 135.681 1 52.49 ? C3 XJ7 801 A 1 HETATM 23 C C4 XJ7 . . . G 2 110.225 141.633 131.595 1 52.49 ? C4 XJ7 801 A 1 HETATM 24 C C5 XJ7 . . . G 2 111.119 141.636 130.357 1 52.49 ? C5 XJ7 801 A 1 HETATM 25 C C6 XJ7 . . . G 2 112.266 142.643 130.396 1 52.49 ? C6 XJ7 801 A 1 HETATM 26 C C7 XJ7 . . . G 2 113.687 143.76 128.864 1 52.49 ? C7 XJ7 801 A 1 HETATM 27 C C8 XJ7 . . . G 2 113.523 145.162 128.29 1 52.49 ? C8 XJ7 801 A 1 HETATM 28 C C9 XJ7 . . . G 2 114.572 145.402 127.2 1 52.49 ? C9 XJ7 801 A 1 HETATM 29 O O1 XJ7 . . . G 2 108.554 144.486 139.133 1 52.49 ? O1 XJ7 801 A 1 HETATM 30 O O10 XJ7 . . . G 2 108.845 140.49 128.313 1 52.49 ? O10 XJ7 801 A 1 HETATM 31 O O12 XJ7 . . . G 2 112.657 145.581 137.076 1 52.49 ? O12 XJ7 801 A 1 HETATM 32 O O2 XJ7 . . . G 2 107.695 143.24 136.801 1 52.49 ? O2 XJ7 801 A 1 HETATM 33 O O3 XJ7 . . . G 2 109.108 144.083 134.473 1 52.49 ? O3 XJ7 801 A 1 HETATM 34 O O4 XJ7 . . . G 2 108.326 141.746 133.683 1 52.49 ? O4 XJ7 801 A 1 HETATM 35 O O5 XJ7 . . . G 2 107.72 143.441 132.426 1 52.49 ? O5 XJ7 801 A 1 HETATM 36 O O6 XJ7 . . . G 2 110.169 142.823 132.314 1 52.49 ? O6 XJ7 801 A 1 HETATM 37 O O7 XJ7 . . . G 2 112.585 142.927 129.065 1 52.49 ? O7 XJ7 801 A 1 HETATM 38 O O8 XJ7 . . . G 2 114.764 143.367 129.123 1 52.49 ? O8 XJ7 801 A 1 HETATM 39 O O9 XJ7 . . . G 2 110.33 141.907 129.236 1 52.49 ? O9 XJ7 801 A 1 HETATM 40 P P XJ7 . . . G 2 108.836 143.022 133.245 1 52.49 ? P XJ7 801 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #