data_7L2S # _model_server_result.job_id pmGnT8ZG6PtPscRr3wpahg _model_server_result.datetime_utc '2024-11-14 17:51:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":802}' # _entry.id 7L2S # _exptl.entry_id 7L2S _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 565.72 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13lambda~5~-phosphahexadecan-10-yl hexadecanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L2S _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 516 D GLY 643 1_555 I NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 B O GLY 516 A GLY 643 1_555 I NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 I NA NA . A NA 803 1_555 C O GLY 516 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc4 I NA NA . A NA 803 1_555 D O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? # _chem_comp.formula 'C28 H56 N O8 P' _chem_comp.formula_weight 565.72 _chem_comp.id 6IY _chem_comp.mon_nstd_flag . _chem_comp.name '(10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13lambda~5~-phosphahexadecan-10-yl hexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 6IY sing 1 n n C12 C11 6IY sing 2 n n C11 O5 6IY sing 3 n n O5 P 6IY sing 4 n n P O3 6IY doub 5 n n P O2 6IY sing 6 n n P O4 6IY sing 7 n n O2 C10 6IY sing 8 n n C10 C9 6IY sing 9 n n C9 C8 6IY sing 10 n n C9 O6 6IY sing 11 n n C8 O1 6IY sing 12 n n O6 C13 6IY sing 13 n n O7 C13 6IY doub 14 n n O1 C7 6IY sing 15 n n C13 C14 6IY sing 16 n n O C7 6IY doub 17 n n C7 C6 6IY sing 18 n n C14 C15 6IY sing 19 n n C15 C16 6IY sing 20 n n C6 C5 6IY sing 21 n n C5 C4 6IY sing 22 n n C16 C17 6IY sing 23 n n C17 C18 6IY sing 24 n n C4 C3 6IY sing 25 n n C18 C19 6IY sing 26 n n C20 C19 6IY sing 27 n n C20 C21 6IY sing 28 n n C22 C23 6IY sing 29 n n C22 C21 6IY sing 30 n n C23 C24 6IY sing 31 n n C3 C2 6IY sing 32 n n C24 C25 6IY sing 33 n n C2 C1 6IY sing 34 n n C25 C26 6IY sing 35 n n C26 C27 6IY sing 36 n n C27 C28 6IY sing 37 n n N H1 6IY sing 38 n n N H2 6IY sing 39 n n C1 H4 6IY sing 40 n n C1 H5 6IY sing 41 n n C1 H6 6IY sing 42 n n C10 H7 6IY sing 43 n n C10 H8 6IY sing 44 n n C11 H9 6IY sing 45 n n C11 H10 6IY sing 46 n n C12 H11 6IY sing 47 n n C12 H12 6IY sing 48 n n C14 H13 6IY sing 49 n n C14 H14 6IY sing 50 n n C15 H15 6IY sing 51 n n C15 H16 6IY sing 52 n n C16 H17 6IY sing 53 n n C16 H18 6IY sing 54 n n C17 H19 6IY sing 55 n n C17 H20 6IY sing 56 n n C18 H21 6IY sing 57 n n C18 H22 6IY sing 58 n n C19 H23 6IY sing 59 n n C19 H24 6IY sing 60 n n C2 H25 6IY sing 61 n n C2 H26 6IY sing 62 n n C20 H27 6IY sing 63 n n C20 H28 6IY sing 64 n n C21 H29 6IY sing 65 n n C21 H30 6IY sing 66 n n C22 H31 6IY sing 67 n n C22 H32 6IY sing 68 n n C23 H33 6IY sing 69 n n C23 H34 6IY sing 70 n n C24 H35 6IY sing 71 n n C24 H36 6IY sing 72 n n C25 H37 6IY sing 73 n n C25 H38 6IY sing 74 n n C26 H39 6IY sing 75 n n C26 H40 6IY sing 76 n n C27 H41 6IY sing 77 n n C27 H42 6IY sing 78 n n C28 H43 6IY sing 79 n n C28 H44 6IY sing 80 n n C28 H45 6IY sing 81 n n C3 H46 6IY sing 82 n n C3 H47 6IY sing 83 n n C4 H48 6IY sing 84 n n C4 H49 6IY sing 85 n n C5 H50 6IY sing 86 n n C5 H51 6IY sing 87 n n C6 H52 6IY sing 88 n n C6 H53 6IY sing 89 n n C8 H54 6IY sing 90 n n C8 H55 6IY sing 91 n n C9 H56 6IY sing 92 n n O4 H57 6IY sing 93 n n # _atom_sites.entry_id 7L2S _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 XJ7 D 1 801 801 XJ7 6ER . F 3 6IY D 1 802 901 6IY 6IY . G 2 XJ7 A 1 801 801 XJ7 6ER . H 3 6IY A 1 802 901 6IY 6IY . I 4 NA A 1 803 1 NA NA . J 2 XJ7 B 1 801 801 XJ7 6ER . K 3 6IY B 1 802 901 6IY 6IY . L 3 6IY C 1 901 901 6IY 6IY . M 2 XJ7 C 1 902 801 XJ7 6ER . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 6IY . . . H 3 153.427 148.625 94.968 1 62.16 ? N 6IY 802 A 1 HETATM 2 O O 6IY . . . H 3 151.932 151.703 104.683 1 62.16 ? O 6IY 802 A 1 HETATM 3 C C1 6IY . . . H 3 152.257 151.117 112.296 1 62.16 ? C1 6IY 802 A 1 HETATM 4 C C10 6IY . . . H 3 155.692 150.786 101.147 1 62.16 ? C10 6IY 802 A 1 HETATM 5 C C11 6IY . . . H 3 153.9 148.608 97.346 1 62.16 ? C11 6IY 802 A 1 HETATM 6 C C12 6IY . . . H 3 154.42 148.987 95.962 1 62.16 ? C12 6IY 802 A 1 HETATM 7 C C13 6IY . . . H 3 157.503 150.33 103.914 1 62.16 ? C13 6IY 802 A 1 HETATM 8 C C14 6IY . . . H 3 157.509 150.56 105.426 1 62.16 ? C14 6IY 802 A 1 HETATM 9 C C15 6IY . . . H 3 158.186 149.375 106.113 1 62.16 ? C15 6IY 802 A 1 HETATM 10 C C16 6IY . . . H 3 157.321 148.878 107.273 1 62.16 ? C16 6IY 802 A 1 HETATM 11 C C17 6IY . . . H 3 158.09 147.808 108.057 1 62.16 ? C17 6IY 802 A 1 HETATM 12 C C18 6IY . . . H 3 157.248 146.575 108.408 1 62.16 ? C18 6IY 802 A 1 HETATM 13 C C19 6IY . . . H 3 156.409 146.736 109.68 1 62.16 ? C19 6IY 802 A 1 HETATM 14 C C2 6IY . . . H 3 152.135 151.963 111.032 1 62.16 ? C2 6IY 802 A 1 HETATM 15 C C20 6IY . . . H 3 155.053 147.385 109.424 1 62.16 ? C20 6IY 802 A 1 HETATM 16 C C21 6IY . . . H 3 153.899 146.441 109.736 1 62.16 ? C21 6IY 802 A 1 HETATM 17 C C22 6IY . . . H 3 152.569 147.186 109.571 1 62.16 ? C22 6IY 802 A 1 HETATM 18 C C23 6IY . . . H 3 151.362 146.246 109.573 1 62.16 ? C23 6IY 802 A 1 HETATM 19 C C24 6IY . . . H 3 151.275 145.325 110.809 1 62.16 ? C24 6IY 802 A 1 HETATM 20 C C25 6IY . . . H 3 151.239 146.138 112.091 1 62.16 ? C25 6IY 802 A 1 HETATM 21 C C26 6IY . . . H 3 150.314 145.532 113.139 1 62.16 ? C26 6IY 802 A 1 HETATM 22 C C27 6IY . . . H 3 150.259 146.501 114.294 1 62.16 ? C27 6IY 802 A 1 HETATM 23 C C28 6IY . . . H 3 149.47 145.9 115.449 1 62.16 ? C28 6IY 802 A 1 HETATM 24 C C3 6IY . . . H 3 152.826 151.267 109.864 1 62.16 ? C3 6IY 802 A 1 HETATM 25 C C4 6IY . . . H 3 152.989 152.26 108.717 1 62.16 ? C4 6IY 802 A 1 HETATM 26 C C5 6IY . . . H 3 152.804 151.563 107.372 1 62.16 ? C5 6IY 802 A 1 HETATM 27 C C6 6IY . . . H 3 153.527 152.378 106.299 1 62.16 ? C6 6IY 802 A 1 HETATM 28 C C7 6IY . . . H 3 153.036 152.063 104.884 1 62.16 ? C7 6IY 802 A 1 HETATM 29 C C8 6IY . . . H 3 154.169 150.991 103.16 1 62.16 ? C8 6IY 802 A 1 HETATM 30 C C9 6IY . . . H 3 155.616 151.006 102.655 1 62.16 ? C9 6IY 802 A 1 HETATM 31 O O1 6IY . . . H 3 153.891 152.205 103.792 1 62.16 ? O1 6IY 802 A 1 HETATM 32 O O2 6IY . . . H 3 155.551 149.418 100.897 1 62.16 ? O2 6IY 802 A 1 HETATM 33 O O3 6IY . . . H 3 153.994 147.512 100.193 1 62.16 ? O3 6IY 802 A 1 HETATM 34 O O4 6IY . . . H 3 153.086 149.58 100.187 1 62.16 ? O4 6IY 802 A 1 HETATM 35 O O5 6IY . . . H 3 154.787 149.065 98.326 1 62.16 ? O5 6IY 802 A 1 HETATM 36 O O6 6IY . . . H 3 156.32 149.963 103.267 1 62.16 ? O6 6IY 802 A 1 HETATM 37 O O7 6IY . . . H 3 158.496 150.457 103.282 1 62.16 ? O7 6IY 802 A 1 HETATM 38 P P 6IY . . . H 3 154.344 148.9 99.903 1 62.16 ? P 6IY 802 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #