data_7L2S
#
_model_server_result.job_id            M4A6EJRWZy53m03k4sbo-A 
_model_server_result.datetime_utc      '2024-12-26 15:40:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l2s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":901}' 
#
_entry.id    7L2S 
#
_exptl.entry_id    7L2S 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              565.72 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13lambda~5~-phosphahexadecan-10-yl hexadecanoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7L2S 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L2S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 516 D GLY 643 1_555 I NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc2 B O GLY 516 A GLY 643 1_555 I NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc3 I NA NA . A NA 803 1_555 C O GLY 516 B GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc4 I NA NA . A NA 803 1_555 D O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
#
_chem_comp.formula           'C28 H56 N O8 P' 
_chem_comp.formula_weight    565.72 
_chem_comp.id                6IY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13lambda~5~-phosphahexadecan-10-yl hexadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 6IY sing 1 n n 
C12 C11 6IY sing 2 n n 
C11 O5 6IY sing 3 n n 
O5 P 6IY sing 4 n n 
P O3 6IY doub 5 n n 
P O2 6IY sing 6 n n 
P O4 6IY sing 7 n n 
O2 C10 6IY sing 8 n n 
C10 C9 6IY sing 9 n n 
C9 C8 6IY sing 10 n n 
C9 O6 6IY sing 11 n n 
C8 O1 6IY sing 12 n n 
O6 C13 6IY sing 13 n n 
O7 C13 6IY doub 14 n n 
O1 C7 6IY sing 15 n n 
C13 C14 6IY sing 16 n n 
O C7 6IY doub 17 n n 
C7 C6 6IY sing 18 n n 
C14 C15 6IY sing 19 n n 
C15 C16 6IY sing 20 n n 
C6 C5 6IY sing 21 n n 
C5 C4 6IY sing 22 n n 
C16 C17 6IY sing 23 n n 
C17 C18 6IY sing 24 n n 
C4 C3 6IY sing 25 n n 
C18 C19 6IY sing 26 n n 
C20 C19 6IY sing 27 n n 
C20 C21 6IY sing 28 n n 
C22 C23 6IY sing 29 n n 
C22 C21 6IY sing 30 n n 
C23 C24 6IY sing 31 n n 
C3 C2 6IY sing 32 n n 
C24 C25 6IY sing 33 n n 
C2 C1 6IY sing 34 n n 
C25 C26 6IY sing 35 n n 
C26 C27 6IY sing 36 n n 
C27 C28 6IY sing 37 n n 
N H1 6IY sing 38 n n 
N H2 6IY sing 39 n n 
C1 H4 6IY sing 40 n n 
C1 H5 6IY sing 41 n n 
C1 H6 6IY sing 42 n n 
C10 H7 6IY sing 43 n n 
C10 H8 6IY sing 44 n n 
C11 H9 6IY sing 45 n n 
C11 H10 6IY sing 46 n n 
C12 H11 6IY sing 47 n n 
C12 H12 6IY sing 48 n n 
C14 H13 6IY sing 49 n n 
C14 H14 6IY sing 50 n n 
C15 H15 6IY sing 51 n n 
C15 H16 6IY sing 52 n n 
C16 H17 6IY sing 53 n n 
C16 H18 6IY sing 54 n n 
C17 H19 6IY sing 55 n n 
C17 H20 6IY sing 56 n n 
C18 H21 6IY sing 57 n n 
C18 H22 6IY sing 58 n n 
C19 H23 6IY sing 59 n n 
C19 H24 6IY sing 60 n n 
C2 H25 6IY sing 61 n n 
C2 H26 6IY sing 62 n n 
C20 H27 6IY sing 63 n n 
C20 H28 6IY sing 64 n n 
C21 H29 6IY sing 65 n n 
C21 H30 6IY sing 66 n n 
C22 H31 6IY sing 67 n n 
C22 H32 6IY sing 68 n n 
C23 H33 6IY sing 69 n n 
C23 H34 6IY sing 70 n n 
C24 H35 6IY sing 71 n n 
C24 H36 6IY sing 72 n n 
C25 H37 6IY sing 73 n n 
C25 H38 6IY sing 74 n n 
C26 H39 6IY sing 75 n n 
C26 H40 6IY sing 76 n n 
C27 H41 6IY sing 77 n n 
C27 H42 6IY sing 78 n n 
C28 H43 6IY sing 79 n n 
C28 H44 6IY sing 80 n n 
C28 H45 6IY sing 81 n n 
C3 H46 6IY sing 82 n n 
C3 H47 6IY sing 83 n n 
C4 H48 6IY sing 84 n n 
C4 H49 6IY sing 85 n n 
C5 H50 6IY sing 86 n n 
C5 H51 6IY sing 87 n n 
C6 H52 6IY sing 88 n n 
C6 H53 6IY sing 89 n n 
C8 H54 6IY sing 90 n n 
C8 H55 6IY sing 91 n n 
C9 H56 6IY sing 92 n n 
O4 H57 6IY sing 93 n n 
#
_atom_sites.entry_id                     7L2S 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 XJ7 D 1 801 801 XJ7 6ER . 
F 3 6IY D 1 802 901 6IY 6IY . 
G 2 XJ7 A 1 801 801 XJ7 6ER . 
H 3 6IY A 1 802 901 6IY 6IY . 
I 4 NA A 1 803 1 NA NA . 
J 2 XJ7 B 1 801 801 XJ7 6ER . 
K 3 6IY B 1 802 901 6IY 6IY . 
L 3 6IY C 1 901 901 6IY 6IY . 
M 2 XJ7 C 1 902 801 XJ7 6ER . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N 6IY . . . L 3 116.398 123.063 95.004 1 58.63 ? N 6IY 901 C 1 
HETATM 2 O O 6IY . . . L 3 120.008 119.961 104.442 1 58.63 ? O 6IY 901 C 1 
HETATM 3 C C1 6IY . . . L 3 119.564 120.492 111.977 1 58.63 ? C1 6IY 901 C 1 
HETATM 4 C C10 6IY . . . L 3 116.445 120.929 100.924 1 58.63 ? C10 6IY 901 C 1 
HETATM 5 C C11 6IY . . . L 3 116.848 122.396 97.304 1 58.63 ? C11 6IY 901 C 1 
HETATM 6 C C12 6IY . . . L 3 117.283 122.28 95.846 1 58.63 ? C12 6IY 901 C 1 
HETATM 7 C C13 6IY . . . L 3 114.437 121.506 103.647 1 58.63 ? C13 6IY 901 C 1 
HETATM 8 C C14 6IY . . . L 3 114.532 121.354 105.163 1 58.63 ? C14 6IY 901 C 1 
HETATM 9 C C15 6IY . . . L 3 113.727 122.461 105.837 1 58.63 ? C15 6IY 901 C 1 
HETATM 10 C C16 6IY . . . L 3 114.491 122.965 107.059 1 58.63 ? C16 6IY 901 C 1 
HETATM 11 C C17 6IY . . . L 3 113.605 123.914 107.865 1 58.63 ? C17 6IY 901 C 1 
HETATM 12 C C18 6IY . . . L 3 114.384 125.122 108.391 1 58.63 ? C18 6IY 901 C 1 
HETATM 13 C C19 6IY . . . L 3 115.382 124.746 109.495 1 58.63 ? C19 6IY 901 C 1 
HETATM 14 C C2 6IY . . . L 3 119.693 119.615 110.735 1 58.63 ? C2 6IY 901 C 1 
HETATM 15 C C20 6IY . . . L 3 116.788 124.449 108.959 1 58.63 ? C20 6IY 901 C 1 
HETATM 16 C C21 6IY . . . L 3 117.844 124.792 110.01 1 58.63 ? C21 6IY 901 C 1 
HETATM 17 C C22 6IY . . . L 3 119.244 124.448 109.472 1 58.63 ? C22 6IY 901 C 1 
HETATM 18 C C23 6IY . . . L 3 120.212 125.635 109.369 1 58.63 ? C23 6IY 901 C 1 
HETATM 19 C C24 6IY . . . L 3 121.237 125.659 110.502 1 58.63 ? C24 6IY 901 C 1 
HETATM 20 C C25 6IY . . . L 3 120.569 125.944 111.84 1 58.63 ? C25 6IY 901 C 1 
HETATM 21 C C26 6IY . . . L 3 121.651 126.074 112.898 1 58.63 ? C26 6IY 901 C 1 
HETATM 22 C C27 6IY . . . L 3 121.258 125.256 114.113 1 58.63 ? C27 6IY 901 C 1 
HETATM 23 C C28 6IY . . . L 3 122.286 125.503 115.205 1 58.63 ? C28 6IY 901 C 1 
HETATM 24 C C3 6IY . . . L 3 118.895 120.206 109.58 1 58.63 ? C3 6IY 901 C 1 
HETATM 25 C C4 6IY . . . L 3 118.857 119.217 108.419 1 58.63 ? C4 6IY 901 C 1 
HETATM 26 C C5 6IY . . . L 3 118.98 119.957 107.09 1 58.63 ? C5 6IY 901 C 1 
HETATM 27 C C6 6IY . . . L 3 118.447 119.066 105.97 1 58.63 ? C6 6IY 901 C 1 
HETATM 28 C C7 6IY . . . L 3 118.912 119.561 104.602 1 58.63 ? C7 6IY 901 C 1 
HETATM 29 C C8 6IY . . . L 3 117.708 120.826 103.074 1 58.63 ? C8 6IY 901 C 1 
HETATM 30 C C9 6IY . . . L 3 116.32 120.805 102.438 1 58.63 ? C9 6IY 901 C 1 
HETATM 31 O O1 6IY . . . L 3 118.041 119.545 103.514 1 58.63 ? O1 6IY 901 C 1 
HETATM 32 O O2 6IY . . . L 3 116.804 122.24 100.599 1 58.63 ? O2 6IY 901 C 1 
HETATM 33 O O3 6IY . . . L 3 118.411 123.913 99.505 1 58.63 ? O3 6IY 901 C 1 
HETATM 34 O O4 6IY . . . L 3 119.327 121.971 100.204 1 58.63 ? O4 6IY 901 C 1 
HETATM 35 O O5 6IY . . . L 3 117.832 121.833 98.125 1 58.63 ? O5 6IY 901 C 1 
HETATM 36 O O6 6IY . . . L 3 115.565 121.881 102.912 1 58.63 ? O6 6IY 901 C 1 
HETATM 37 O O7 6IY . . . L 3 113.41 121.309 103.089 1 58.63 ? O7 6IY 901 C 1 
HETATM 38 P P 6IY . . . L 3 118.1 122.491 99.611 1 58.63 ? P 6IY 901 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           38 
#