data_7L2U
#
_model_server_result.job_id            AGgAFlmBgIAAJJ4msrHuaw 
_model_server_result.datetime_utc      '2024-11-04 22:57:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l2u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":801}' 
#
_entry.id    7L2U 
#
_exptl.entry_id    7L2U 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              600.633 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7L2U 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L2U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 M N N 
? 3 N N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 3 F CYS 2 1_555 B SG CYS 17 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 10 F CYS 9 1_555 B SG CYS 24 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 B SG CYS 16 F CYS 15 1_555 B SG CYS 32 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 45 F CYS 44 1_555 B SG CYS 59 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 52 F CYS 51 1_555 B SG CYS 64 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 58 F CYS 57 1_555 B SG CYS 72 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 C SG CYS 3 E CYS 2 1_555 C SG CYS 17 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 C SG CYS 10 E CYS 9 1_555 C SG CYS 24 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf9 C SG CYS 16 E CYS 15 1_555 C SG CYS 32 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 C SG CYS 45 E CYS 44 1_555 C SG CYS 59 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 C SG CYS 52 E CYS 51 1_555 C SG CYS 64 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 C SG CYS 58 E CYS 57 1_555 C SG CYS 72 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A O GLY 516 A GLY 643 1_555 I NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? 
metalc ? metalc2 I NA NA . A NA 803 1_555 E O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? 
metalc ? metalc3 I NA NA . A NA 803 1_555 F O GLY 516 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.193 ? 
#
_chem_comp.formula           'C26 H49 O13 P' 
_chem_comp.formula_weight    600.633 
_chem_comp.id                XJ7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7L2U 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 XJ7 A 1 801 801 XJ7 6ER . 
H 4 XKP A 1 802 901 XKP NQT . 
I 5 NA A 1 803 1 NA NA . 
J 4 XKP F 1 901 901 XKP NQT . 
K 4 XKP F 1 902 901 XKP NQT . 
L 4 XKP E 1 901 901 XKP NQT . 
M 3 XJ7 B 1 801 801 XJ7 6ER . 
N 3 XJ7 C 1 801 801 XJ7 6ER . 
O 5 NA C 1 802 2 NA NA . 
P 3 XJ7 D 1 801 801 XJ7 6ER . 
Q 6 HOH A 1 1001 1001 HOH HOH . 
Q 6 HOH A 2 1002 1005 HOH HOH . 
R 6 HOH B 1 1001 1001 HOH HOH . 
R 6 HOH B 2 1002 1003 HOH HOH . 
S 6 HOH C 1 901 1004 HOH HOH . 
S 6 HOH C 2 902 1001 HOH HOH . 
S 6 HOH C 3 903 1002 HOH HOH . 
T 6 HOH D 1 901 1007 HOH HOH . 
T 6 HOH D 2 902 1001 HOH HOH . 
T 6 HOH D 3 903 1006 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 XJ7 . . . M 3 146.637 158.201 125.243 1 36.21 ? C10 XJ7 801 B 1 
HETATM 2 O O11 XJ7 . . . M 3 144.501 159.341 134.69 1 36.21 ? O11 XJ7 801 B 1 
HETATM 3 C C16 XJ7 . . . M 3 140.78 158.949 123.525 1 36.21 ? C16 XJ7 801 B 1 
HETATM 4 C C17 XJ7 . . . M 3 141.237 157.555 123.108 1 36.21 ? C17 XJ7 801 B 1 
HETATM 5 C C19 XJ7 . . . M 3 142.373 158.61 121.1 1 36.21 ? C19 XJ7 801 B 1 
HETATM 6 C C20 XJ7 . . . M 3 143.203 158.285 119.861 1 36.21 ? C20 XJ7 801 B 1 
HETATM 7 C C21 XJ7 . . . M 3 142.546 158.846 118.602 1 36.21 ? C21 XJ7 801 B 1 
HETATM 8 C C23 XJ7 . . . M 3 142.706 159.148 116.089 1 36.21 ? C23 XJ7 801 B 1 
HETATM 9 C C25 XJ7 . . . M 3 143.875 159.829 136.949 1 36.21 ? C25 XJ7 801 B 1 
HETATM 10 C C1 XJ7 . . . M 3 142.546 161.97 137.442 1 36.21 ? C1 XJ7 801 B 1 
HETATM 11 C C XJ7 . . . M 3 143.551 160.928 137.973 1 36.21 ? C XJ7 801 B 1 
HETATM 12 O O XJ7 . . . M 3 144.734 161.588 138.333 1 36.21 ? O XJ7 801 B 1 
HETATM 13 C C11 XJ7 . . . M 3 139.89 161.833 128.726 1 36.21 ? C11 XJ7 801 B 1 
HETATM 14 C C12 XJ7 . . . M 3 139.516 161.913 127.251 1 36.21 ? C12 XJ7 801 B 1 
HETATM 15 C C13 XJ7 . . . M 3 139.267 160.517 126.691 1 36.21 ? C13 XJ7 801 B 1 
HETATM 16 C C14 XJ7 . . . M 3 139.584 160.383 125.205 1 36.21 ? C14 XJ7 801 B 1 
HETATM 17 C C15 XJ7 . . . M 3 139.927 158.955 124.786 1 36.21 ? C15 XJ7 801 B 1 
HETATM 18 C C18 XJ7 . . . M 3 142.493 157.598 122.24 1 36.21 ? C18 XJ7 801 B 1 
HETATM 19 C C2 XJ7 . . . M 3 142.86 162.505 136.036 1 36.21 ? C2 XJ7 801 B 1 
HETATM 20 C C22 XJ7 . . . M 3 143.391 158.633 117.352 1 36.21 ? C22 XJ7 801 B 1 
HETATM 21 C C24 XJ7 . . . M 3 144.292 160.399 135.594 1 36.21 ? C24 XJ7 801 B 1 
HETATM 22 C C3 XJ7 . . . M 3 143.226 161.376 135.043 1 36.21 ? C3 XJ7 801 B 1 
HETATM 23 C C4 XJ7 . . . M 3 141.781 160.628 131.137 1 36.21 ? C4 XJ7 801 B 1 
HETATM 24 C C5 XJ7 . . . M 3 141.59 160.473 129.634 1 36.21 ? C5 XJ7 801 B 1 
HETATM 25 C C6 XJ7 . . . M 3 142.893 159.997 128.998 1 36.21 ? C6 XJ7 801 B 1 
HETATM 26 C C7 XJ7 . . . M 3 143.896 158.147 128.037 1 36.21 ? C7 XJ7 801 B 1 
HETATM 27 C C8 XJ7 . . . M 3 144.685 158.62 126.814 1 36.21 ? C8 XJ7 801 B 1 
HETATM 28 C C9 XJ7 . . . M 3 145.877 157.726 126.48 1 36.21 ? C9 XJ7 801 B 1 
HETATM 29 O O1 XJ7 . . . M 3 142.559 163.054 138.332 1 36.21 ? O1 XJ7 801 B 1 
HETATM 30 O O10 XJ7 . . . M 3 139.046 161.878 129.555 1 36.21 ? O10 XJ7 801 B 1 
HETATM 31 O O12 XJ7 . . . M 3 144.903 159.01 137.475 1 36.21 ? O12 XJ7 801 B 1 
HETATM 32 O O2 XJ7 . . . M 3 141.76 163.218 135.578 1 36.21 ? O2 XJ7 801 B 1 
HETATM 33 O O3 XJ7 . . . M 3 143.704 161.992 133.865 1 36.21 ? O3 XJ7 801 B 1 
HETATM 34 O O4 XJ7 . . . M 3 141.229 162.461 133.34 1 36.21 ? O4 XJ7 801 B 1 
HETATM 35 O O5 XJ7 . . . M 3 142.913 163.969 132.402 1 36.21 ? O5 XJ7 801 B 1 
HETATM 36 O O6 XJ7 . . . M 3 142.732 161.62 131.384 1 36.21 ? O6 XJ7 801 B 1 
HETATM 37 O O7 XJ7 . . . M 3 142.691 158.773 128.357 1 36.21 ? O7 XJ7 801 B 1 
HETATM 38 O O8 XJ7 . . . M 3 144.305 157.269 128.722 1 36.21 ? O8 XJ7 801 B 1 
HETATM 39 O O9 XJ7 . . . M 3 141.233 161.706 129.088 1 36.21 ? O9 XJ7 801 B 1 
HETATM 40 P P XJ7 . . . M 3 142.614 162.531 132.753 1 36.21 ? P XJ7 801 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#