data_7L2U # _model_server_result.job_id enECaqBRPS7fjBIPQsABsA _model_server_result.datetime_utc '2025-02-15 17:56:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l2u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":801}' # _entry.id 7L2U # _exptl.entry_id 7L2U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 600.633 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L2U _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L2U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 M N N ? 3 N N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 3 F CYS 2 1_555 B SG CYS 17 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 10 F CYS 9 1_555 B SG CYS 24 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 16 F CYS 15 1_555 B SG CYS 32 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 45 F CYS 44 1_555 B SG CYS 59 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 52 F CYS 51 1_555 B SG CYS 64 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 58 F CYS 57 1_555 B SG CYS 72 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 3 E CYS 2 1_555 C SG CYS 17 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 C SG CYS 10 E CYS 9 1_555 C SG CYS 24 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 C SG CYS 16 E CYS 15 1_555 C SG CYS 32 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 C SG CYS 45 E CYS 44 1_555 C SG CYS 59 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 C SG CYS 52 E CYS 51 1_555 C SG CYS 64 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 C SG CYS 58 E CYS 57 1_555 C SG CYS 72 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A O GLY 516 A GLY 643 1_555 I NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? metalc ? metalc2 I NA NA . A NA 803 1_555 E O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc3 I NA NA . A NA 803 1_555 F O GLY 516 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.193 ? # _chem_comp.formula 'C26 H49 O13 P' _chem_comp.formula_weight 600.633 _chem_comp.id XJ7 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2R,3S,4S,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 XJ7 sing 376 n n C22 C21 XJ7 sing 377 n n C21 C20 XJ7 sing 378 n n C20 C19 XJ7 sing 379 n n C19 C18 XJ7 sing 380 n n C18 C17 XJ7 sing 381 n n C17 C16 XJ7 sing 382 n n C16 C15 XJ7 sing 383 n n C15 C14 XJ7 sing 384 n n C14 C13 XJ7 sing 385 n n C13 C12 XJ7 sing 386 n n C10 C9 XJ7 sing 387 n n C9 C8 XJ7 sing 388 n n C12 C11 XJ7 sing 389 n n C8 C7 XJ7 sing 390 n n O10 C11 XJ7 doub 391 n n C11 O9 XJ7 sing 392 n n C7 O8 XJ7 doub 393 n n C7 O7 XJ7 sing 394 n n O9 C5 XJ7 sing 395 n n O7 C6 XJ7 sing 396 n n C6 C5 XJ7 sing 397 n n C5 C4 XJ7 sing 398 n n C4 O6 XJ7 sing 399 n n O5 P XJ7 doub 400 n n O6 P XJ7 sing 401 n n P O3 XJ7 sing 402 n n P O4 XJ7 sing 403 n n O3 C3 XJ7 sing 404 n n O11 C24 XJ7 sing 405 n n C3 C24 XJ7 sing 406 n n C3 C2 XJ7 sing 407 n n C24 C25 XJ7 sing 408 n n O2 C2 XJ7 sing 409 n n C2 C1 XJ7 sing 410 n n C25 O12 XJ7 sing 411 n n C25 C XJ7 sing 412 n n C1 C XJ7 sing 413 n n C1 O1 XJ7 sing 414 n n C O XJ7 sing 415 n n C10 H1 XJ7 sing 416 n n C10 H2 XJ7 sing 417 n n C10 H3 XJ7 sing 418 n n O11 H4 XJ7 sing 419 n n C16 H5 XJ7 sing 420 n n C16 H6 XJ7 sing 421 n n C17 H7 XJ7 sing 422 n n C17 H8 XJ7 sing 423 n n C19 H9 XJ7 sing 424 n n C19 H10 XJ7 sing 425 n n C20 H11 XJ7 sing 426 n n C20 H12 XJ7 sing 427 n n C21 H13 XJ7 sing 428 n n C21 H14 XJ7 sing 429 n n C23 H15 XJ7 sing 430 n n C23 H16 XJ7 sing 431 n n C23 H17 XJ7 sing 432 n n C25 H18 XJ7 sing 433 n n C1 H19 XJ7 sing 434 n n C H20 XJ7 sing 435 n n O H21 XJ7 sing 436 n n C12 H22 XJ7 sing 437 n n C12 H23 XJ7 sing 438 n n C13 H24 XJ7 sing 439 n n C13 H25 XJ7 sing 440 n n C14 H26 XJ7 sing 441 n n C14 H27 XJ7 sing 442 n n C15 H28 XJ7 sing 443 n n C15 H29 XJ7 sing 444 n n C18 H30 XJ7 sing 445 n n C18 H31 XJ7 sing 446 n n C2 H32 XJ7 sing 447 n n C22 H33 XJ7 sing 448 n n C22 H34 XJ7 sing 449 n n C24 H35 XJ7 sing 450 n n C3 H36 XJ7 sing 451 n n C4 H37 XJ7 sing 452 n n C4 H38 XJ7 sing 453 n n C5 H39 XJ7 sing 454 n n C6 H40 XJ7 sing 455 n n C6 H41 XJ7 sing 456 n n C8 H42 XJ7 sing 457 n n C8 H43 XJ7 sing 458 n n C9 H44 XJ7 sing 459 n n C9 H45 XJ7 sing 460 n n O1 H46 XJ7 sing 461 n n O12 H47 XJ7 sing 462 n n O2 H48 XJ7 sing 463 n n O4 H49 XJ7 sing 464 n n # _atom_sites.entry_id 7L2U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 XJ7 A 1 801 801 XJ7 6ER . H 4 XKP A 1 802 901 XKP NQT . I 5 NA A 1 803 1 NA NA . J 4 XKP F 1 901 901 XKP NQT . K 4 XKP F 1 902 901 XKP NQT . L 4 XKP E 1 901 901 XKP NQT . M 3 XJ7 B 1 801 801 XJ7 6ER . N 3 XJ7 C 1 801 801 XJ7 6ER . O 5 NA C 1 802 2 NA NA . P 3 XJ7 D 1 801 801 XJ7 6ER . Q 6 HOH A 1 1001 1001 HOH HOH . Q 6 HOH A 2 1002 1005 HOH HOH . R 6 HOH B 1 1001 1001 HOH HOH . R 6 HOH B 2 1002 1003 HOH HOH . S 6 HOH C 1 901 1004 HOH HOH . S 6 HOH C 2 902 1001 HOH HOH . S 6 HOH C 3 903 1002 HOH HOH . T 6 HOH D 1 901 1007 HOH HOH . T 6 HOH D 2 902 1001 HOH HOH . T 6 HOH D 3 903 1006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XJ7 . . . N 3 156.893 125.532 126.218 1 39.06 ? C10 XJ7 801 C 1 HETATM 2 O O11 XJ7 . . . N 3 160.047 126.944 134.437 1 39.06 ? O11 XJ7 801 C 1 HETATM 3 C C16 XJ7 . . . N 3 158.987 130.388 123.639 1 39.06 ? C16 XJ7 801 C 1 HETATM 4 C C17 XJ7 . . . N 3 157.706 129.687 123.22 1 39.06 ? C17 XJ7 801 C 1 HETATM 5 C C19 XJ7 . . . N 3 158.87 129.045 121.056 1 39.06 ? C19 XJ7 801 C 1 HETATM 6 C C20 XJ7 . . . N 3 158.652 128.285 119.751 1 39.06 ? C20 XJ7 801 C 1 HETATM 7 C C21 XJ7 . . . N 3 159.193 129.037 118.539 1 39.06 ? C21 XJ7 801 C 1 HETATM 8 C C23 XJ7 . . . N 3 159.599 128.885 116.033 1 39.06 ? C23 XJ7 801 C 1 HETATM 9 C C25 XJ7 . . . N 3 159.887 127.419 136.78 1 39.06 ? C25 XJ7 801 C 1 HETATM 10 C C1 XJ7 . . . N 3 161.755 128.813 137.832 1 39.06 ? C1 XJ7 801 C 1 HETATM 11 C C XJ7 . . . N 3 160.66 127.765 138.066 1 39.06 ? C XJ7 801 C 1 HETATM 12 O O XJ7 . . . N 3 161.268 126.599 138.566 1 39.06 ? O XJ7 801 C 1 HETATM 13 C C11 XJ7 . . . N 3 162.022 131.526 128.736 1 39.06 ? C11 XJ7 801 C 1 HETATM 14 C C12 XJ7 . . . N 3 161.913 131.841 127.252 1 39.06 ? C12 XJ7 801 C 1 HETATM 15 C C13 XJ7 . . . N 3 160.449 131.963 126.835 1 39.06 ? C13 XJ7 801 C 1 HETATM 16 C C14 XJ7 . . . N 3 160.227 131.742 125.34 1 39.06 ? C14 XJ7 801 C 1 HETATM 17 C C15 XJ7 . . . N 3 158.886 131.096 124.984 1 39.06 ? C15 XJ7 801 C 1 HETATM 18 C C18 XJ7 . . . N 3 157.969 128.579 122.203 1 39.06 ? C18 XJ7 801 C 1 HETATM 19 C C2 XJ7 . . . N 3 162.673 128.38 136.688 1 39.06 ? C2 XJ7 801 C 1 HETATM 20 C C22 XJ7 . . . N 3 158.9 128.281 117.247 1 39.06 ? C22 XJ7 801 C 1 HETATM 21 C C24 XJ7 . . . N 3 160.813 127.075 135.607 1 39.06 ? C24 XJ7 801 C 1 HETATM 22 C C3 XJ7 . . . N 3 161.86 128.177 135.401 1 39.06 ? C3 XJ7 801 C 1 HETATM 23 C C4 XJ7 . . . N 3 161.517 130.278 131.582 1 39.06 ? C4 XJ7 801 C 1 HETATM 24 C C5 XJ7 . . . N 3 160.879 130.156 130.196 1 39.06 ? C5 XJ7 801 C 1 HETATM 25 C C6 XJ7 . . . N 3 160.061 128.869 130.117 1 39.06 ? C6 XJ7 801 C 1 HETATM 26 C C7 XJ7 . . . N 3 159.118 128.157 128.054 1 39.06 ? C7 XJ7 801 C 1 HETATM 27 C C8 XJ7 . . . N 3 157.866 127.375 127.679 1 39.06 ? C8 XJ7 801 C 1 HETATM 28 C C9 XJ7 . . . N 3 158.157 126.265 126.671 1 39.06 ? C9 XJ7 801 C 1 HETATM 29 O O1 XJ7 . . . N 3 162.507 128.963 139.011 1 39.06 ? O1 XJ7 801 C 1 HETATM 30 O O10 XJ7 . . . N 3 162.236 132.399 129.506 1 39.06 ? O10 XJ7 801 C 1 HETATM 31 O O12 XJ7 . . . N 3 159.058 126.315 137.044 1 39.06 ? O12 XJ7 801 C 1 HETATM 32 O O2 XJ7 . . . N 3 163.666 129.355 136.491 1 39.06 ? O2 XJ7 801 C 1 HETATM 33 O O3 XJ7 . . . N 3 162.718 127.833 134.34 1 39.06 ? O3 XJ7 801 C 1 HETATM 34 O O4 XJ7 . . . N 3 163.144 130.332 133.9 1 39.06 ? O4 XJ7 801 C 1 HETATM 35 O O5 XJ7 . . . N 3 164.432 128.699 132.61 1 39.06 ? O5 XJ7 801 C 1 HETATM 36 O O6 XJ7 . . . N 3 161.941 129.026 132.034 1 39.06 ? O6 XJ7 801 C 1 HETATM 37 O O7 XJ7 . . . N 3 159.073 129.028 129.137 1 39.06 ? O7 XJ7 801 C 1 HETATM 38 O O8 XJ7 . . . N 3 160.124 128.022 127.451 1 39.06 ? O8 XJ7 801 C 1 HETATM 39 O O9 XJ7 . . . N 3 161.851 130.218 129.198 1 39.06 ? O9 XJ7 801 C 1 HETATM 40 P P XJ7 . . . N 3 163.082 128.989 133.22 1 39.06 ? P XJ7 801 C 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #