data_7L2U # _model_server_result.job_id gGuK0JP2Ev1Q_U1WOTUfvA _model_server_result.datetime_utc '2025-02-12 00:27:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l2u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":901}' # _entry.id 7L2U # _exptl.entry_id 7L2U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 495.587 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L2U _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L2U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 3 F CYS 2 1_555 B SG CYS 17 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 10 F CYS 9 1_555 B SG CYS 24 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 16 F CYS 15 1_555 B SG CYS 32 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 45 F CYS 44 1_555 B SG CYS 59 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 52 F CYS 51 1_555 B SG CYS 64 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 58 F CYS 57 1_555 B SG CYS 72 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 3 E CYS 2 1_555 C SG CYS 17 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 C SG CYS 10 E CYS 9 1_555 C SG CYS 24 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 C SG CYS 16 E CYS 15 1_555 C SG CYS 32 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 C SG CYS 45 E CYS 44 1_555 C SG CYS 59 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 C SG CYS 52 E CYS 51 1_555 C SG CYS 64 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 C SG CYS 58 E CYS 57 1_555 C SG CYS 72 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A O GLY 516 A GLY 643 1_555 I NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? metalc ? metalc2 I NA NA . A NA 803 1_555 E O GLY 516 C GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc3 I NA NA . A NA 803 1_555 F O GLY 516 D GLY 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.193 ? # _chem_comp.formula 'C23 H46 N O8 P' _chem_comp.formula_weight 495.587 _chem_comp.id XKP _chem_comp.mon_nstd_flag . _chem_comp.name '(11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C10 XKP sing 465 n n C10 C9 XKP sing 466 n n C9 O5 XKP sing 467 n n O4 P XKP doub 468 n n O5 P XKP sing 469 n n P O3 XKP sing 470 n n P O2 XKP sing 471 n n O2 C8 XKP sing 472 n n C8 C7 XKP sing 473 n n C6 C7 XKP sing 474 n n C6 O1 XKP sing 475 n n C7 O6 XKP sing 476 n n O6 C11 XKP sing 477 n n O1 C5 XKP sing 478 n n C11 C12 XKP sing 479 n n C11 O7 XKP doub 480 n n C5 O XKP doub 481 n n C5 C4 XKP sing 482 n n C12 C13 XKP sing 483 n n C4 C3 XKP sing 484 n n C16 C15 XKP sing 485 n n C16 C18 XKP sing 486 n n C15 C14 XKP sing 487 n n C14 C13 XKP sing 488 n n C3 C2 XKP sing 489 n n C19 C18 XKP sing 490 n n C19 C17 XKP sing 491 n n C2 C1 XKP sing 492 n n C17 C22 XKP sing 493 n n C1 C XKP sing 494 n n C C20 XKP sing 495 n n C21 C20 XKP sing 496 n n C14 H1 XKP sing 497 n n C14 H2 XKP sing 498 n n C15 H3 XKP sing 499 n n C15 H4 XKP sing 500 n n C20 H5 XKP sing 501 n n C20 H6 XKP sing 502 n n C21 H7 XKP sing 503 n n C21 H8 XKP sing 504 n n C21 H9 XKP sing 505 n n N H10 XKP sing 506 n n N H11 XKP sing 507 n n C3 H13 XKP sing 508 n n C3 H14 XKP sing 509 n n C4 H15 XKP sing 510 n n C4 H16 XKP sing 511 n n C2 H17 XKP sing 512 n n C2 H18 XKP sing 513 n n C1 H19 XKP sing 514 n n C1 H20 XKP sing 515 n n C H21 XKP sing 516 n n C H22 XKP sing 517 n n C6 H23 XKP sing 518 n n C6 H24 XKP sing 519 n n C7 H25 XKP sing 520 n n C19 H26 XKP sing 521 n n C19 H27 XKP sing 522 n n C18 H28 XKP sing 523 n n C18 H29 XKP sing 524 n n C17 H30 XKP sing 525 n n C17 H31 XKP sing 526 n n C9 H32 XKP sing 527 n n C9 H33 XKP sing 528 n n C8 H34 XKP sing 529 n n C8 H35 XKP sing 530 n n C16 H36 XKP sing 531 n n C16 H37 XKP sing 532 n n C10 H38 XKP sing 533 n n C10 H39 XKP sing 534 n n C12 H40 XKP sing 535 n n C12 H41 XKP sing 536 n n C13 H42 XKP sing 537 n n C13 H43 XKP sing 538 n n C22 H44 XKP sing 539 n n C22 H45 XKP sing 540 n n C22 H46 XKP sing 541 n n O3 H47 XKP sing 542 n n # _atom_sites.entry_id 7L2U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 XJ7 A 1 801 801 XJ7 6ER . H 4 XKP A 1 802 901 XKP NQT . I 5 NA A 1 803 1 NA NA . J 4 XKP F 1 901 901 XKP NQT . K 4 XKP F 1 902 901 XKP NQT . L 4 XKP E 1 901 901 XKP NQT . M 3 XJ7 B 1 801 801 XJ7 6ER . N 3 XJ7 C 1 801 801 XJ7 6ER . O 5 NA C 1 802 2 NA NA . P 3 XJ7 D 1 801 801 XJ7 6ER . Q 6 HOH A 1 1001 1001 HOH HOH . Q 6 HOH A 2 1002 1005 HOH HOH . R 6 HOH B 1 1001 1001 HOH HOH . R 6 HOH B 2 1002 1003 HOH HOH . S 6 HOH C 1 901 1004 HOH HOH . S 6 HOH C 2 902 1001 HOH HOH . S 6 HOH C 3 903 1002 HOH HOH . T 6 HOH D 1 901 1007 HOH HOH . T 6 HOH D 2 902 1001 HOH HOH . T 6 HOH D 3 903 1006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 XKP . . . L 4 113.975 122.381 109.31 1 26.72 ? C11 XKP 901 E 1 HETATM 2 C C14 XKP . . . L 4 117.07 123.387 110.49 1 26.72 ? C14 XKP 901 E 1 HETATM 3 C C15 XKP . . . L 4 118.21 122.371 110.526 1 26.72 ? C15 XKP 901 E 1 HETATM 4 C C20 XKP . . . L 4 117.849 120.209 115.621 1 26.72 ? C20 XKP 901 E 1 HETATM 5 C C21 XKP . . . L 4 119.37 120.213 115.739 1 26.72 ? C21 XKP 901 E 1 HETATM 6 C C5 XKP . . . L 4 115.358 118.053 109.141 1 26.72 ? C5 XKP 901 E 1 HETATM 7 N N XKP . . . L 4 108.65 118.663 101.62 1 26.72 ? N XKP 901 E 1 HETATM 8 C C3 XKP . . . L 4 116.378 118.364 111.419 1 26.72 ? C3 XKP 901 E 1 HETATM 9 C C4 XKP . . . L 4 115.629 117.408 110.494 1 26.72 ? C4 XKP 901 E 1 HETATM 10 C C2 XKP . . . L 4 115.843 118.339 112.852 1 26.72 ? C2 XKP 901 E 1 HETATM 11 C C1 XKP . . . L 4 116.358 119.499 113.702 1 26.72 ? C1 XKP 901 E 1 HETATM 12 C C XKP . . . L 4 117.339 119.044 114.777 1 26.72 ? C XKP 901 E 1 HETATM 13 C C6 XKP . . . L 4 114.076 119.511 107.763 1 26.72 ? C6 XKP 901 E 1 HETATM 14 C C7 XKP . . . L 4 113.089 120.657 107.958 1 26.72 ? C7 XKP 901 E 1 HETATM 15 C C19 XKP . . . L 4 121.453 124.214 111.653 1 26.72 ? C19 XKP 901 E 1 HETATM 16 C C18 XKP . . . L 4 120.072 123.571 111.737 1 26.72 ? C18 XKP 901 E 1 HETATM 17 C C17 XKP . . . L 4 121.83 124.919 112.951 1 26.72 ? C17 XKP 901 E 1 HETATM 18 C C9 XKP . . . L 4 110.731 119.435 102.669 1 26.72 ? C9 XKP 901 E 1 HETATM 19 C C8 XKP . . . L 4 112.137 120.71 106.768 1 26.72 ? C8 XKP 901 E 1 HETATM 20 C C16 XKP . . . L 4 119.576 123.039 110.394 1 26.72 ? C16 XKP 901 E 1 HETATM 21 O O1 XKP . . . L 4 114.19 118.809 108.969 1 26.72 ? O1 XKP 901 E 1 HETATM 22 C C10 XKP . . . L 4 109.215 119.597 102.578 1 26.72 ? C10 XKP 901 E 1 HETATM 23 C C12 XKP . . . L 4 115.083 121.817 110.199 1 26.72 ? C12 XKP 901 E 1 HETATM 24 O O XKP . . . L 4 116.138 117.91 108.261 1 26.72 ? O XKP 901 E 1 HETATM 25 C C13 XKP . . . L 4 115.766 122.859 111.085 1 26.72 ? C13 XKP 901 E 1 HETATM 26 C C22 XKP . . . L 4 121.998 123.951 114.119 1 26.72 ? C22 XKP 901 E 1 HETATM 27 O O2 XKP . . . L 4 112.892 120.914 105.606 1 26.72 ? O2 XKP 901 E 1 HETATM 28 O O3 XKP . . . L 4 113.285 118.524 104.672 1 26.72 ? O3 XKP 901 E 1 HETATM 29 O O4 XKP . . . L 4 113.453 120.436 103.137 1 26.72 ? O4 XKP 901 E 1 HETATM 30 O O5 XKP . . . L 4 111.115 119.733 103.98 1 26.72 ? O5 XKP 901 E 1 HETATM 31 O O6 XKP . . . L 4 113.795 121.861 108.024 1 26.72 ? O6 XKP 901 E 1 HETATM 32 O O7 XKP . . . L 4 113.271 123.252 109.695 1 26.72 ? O7 XKP 901 E 1 HETATM 33 P P XKP . . . L 4 112.718 119.88 104.332 1 26.72 ? P XKP 901 E 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 84 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #