data_7L2X # _model_server_result.job_id WQ4yWoWrCR0AQfmFyGqyHg _model_server_result.datetime_utc '2024-11-04 22:56:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":903}' # _entry.id 7L2X # _exptl.entry_id 7L2X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 565.72 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13lambda~5~-phosphahexadecan-10-yl hexadecanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L2X _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 L N N # _chem_comp.formula 'C28 H56 N O8 P' _chem_comp.formula_weight 565.72 _chem_comp.id 6IY _chem_comp.mon_nstd_flag . _chem_comp.name '(10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13lambda~5~-phosphahexadecan-10-yl hexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 6IY sing 93 n n C12 C11 6IY sing 94 n n C11 O5 6IY sing 95 n n O5 P 6IY sing 96 n n P O3 6IY doub 97 n n P O2 6IY sing 98 n n P O4 6IY sing 99 n n O2 C10 6IY sing 100 n n C10 C9 6IY sing 101 n n C9 C8 6IY sing 102 n n C9 O6 6IY sing 103 n n C8 O1 6IY sing 104 n n O6 C13 6IY sing 105 n n O7 C13 6IY doub 106 n n O1 C7 6IY sing 107 n n C13 C14 6IY sing 108 n n O C7 6IY doub 109 n n C7 C6 6IY sing 110 n n C14 C15 6IY sing 111 n n C15 C16 6IY sing 112 n n C6 C5 6IY sing 113 n n C5 C4 6IY sing 114 n n C16 C17 6IY sing 115 n n C17 C18 6IY sing 116 n n C4 C3 6IY sing 117 n n C18 C19 6IY sing 118 n n C20 C19 6IY sing 119 n n C20 C21 6IY sing 120 n n C22 C23 6IY sing 121 n n C22 C21 6IY sing 122 n n C23 C24 6IY sing 123 n n C3 C2 6IY sing 124 n n C24 C25 6IY sing 125 n n C2 C1 6IY sing 126 n n C25 C26 6IY sing 127 n n C26 C27 6IY sing 128 n n C27 C28 6IY sing 129 n n N H1 6IY sing 130 n n N H2 6IY sing 131 n n C1 H4 6IY sing 132 n n C1 H5 6IY sing 133 n n C1 H6 6IY sing 134 n n C10 H7 6IY sing 135 n n C10 H8 6IY sing 136 n n C11 H9 6IY sing 137 n n C11 H10 6IY sing 138 n n C12 H11 6IY sing 139 n n C12 H12 6IY sing 140 n n C14 H13 6IY sing 141 n n C14 H14 6IY sing 142 n n C15 H15 6IY sing 143 n n C15 H16 6IY sing 144 n n C16 H17 6IY sing 145 n n C16 H18 6IY sing 146 n n C17 H19 6IY sing 147 n n C17 H20 6IY sing 148 n n C18 H21 6IY sing 149 n n C18 H22 6IY sing 150 n n C19 H23 6IY sing 151 n n C19 H24 6IY sing 152 n n C2 H25 6IY sing 153 n n C2 H26 6IY sing 154 n n C20 H27 6IY sing 155 n n C20 H28 6IY sing 156 n n C21 H29 6IY sing 157 n n C21 H30 6IY sing 158 n n C22 H31 6IY sing 159 n n C22 H32 6IY sing 160 n n C23 H33 6IY sing 161 n n C23 H34 6IY sing 162 n n C24 H35 6IY sing 163 n n C24 H36 6IY sing 164 n n C25 H37 6IY sing 165 n n C25 H38 6IY sing 166 n n C26 H39 6IY sing 167 n n C26 H40 6IY sing 168 n n C27 H41 6IY sing 169 n n C27 H42 6IY sing 170 n n C28 H43 6IY sing 171 n n C28 H44 6IY sing 172 n n C28 H45 6IY sing 173 n n C3 H46 6IY sing 174 n n C3 H47 6IY sing 175 n n C4 H48 6IY sing 176 n n C4 H49 6IY sing 177 n n C5 H50 6IY sing 178 n n C5 H51 6IY sing 179 n n C6 H52 6IY sing 180 n n C6 H53 6IY sing 181 n n C8 H54 6IY sing 182 n n C8 H55 6IY sing 183 n n C9 H56 6IY sing 184 n n O4 H57 6IY sing 185 n n # _atom_sites.entry_id 7L2X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6EU A 1 901 901 6EU 6EU . F 3 6IY A 1 902 1001 6IY 6IY . G 3 6IY A 1 903 1001 6IY 6IY . H 2 6EU D 1 901 901 6EU 6EU . I 3 6IY D 1 902 1001 6IY 6IY . J 4 XPJ D 1 903 1 XPJ 656 . K 2 6EU B 1 901 901 6EU 6EU . L 3 6IY B 1 902 1001 6IY 6IY . M 2 6EU C 1 901 901 6EU 6EU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 6IY . . . G 3 149.22 144.81 95.864 1 70.82 ? N 6IY 903 A 1 HETATM 2 O O 6IY . . . G 3 148.738 151.184 104.642 1 70.82 ? O 6IY 903 A 1 HETATM 3 C C1 6IY . . . G 3 147.41 149.591 110.689 1 70.82 ? C1 6IY 903 A 1 HETATM 4 C C10 6IY . . . G 3 150.743 149.708 100.069 1 70.82 ? C10 6IY 903 A 1 HETATM 5 C C11 6IY . . . G 3 149.731 146.108 97.866 1 70.82 ? C11 6IY 903 A 1 HETATM 6 C C12 6IY . . . G 3 149.357 146.156 96.379 1 70.82 ? C12 6IY 903 A 1 HETATM 7 C C13 6IY . . . G 3 148.991 147.103 101.881 1 70.82 ? C13 6IY 903 A 1 HETATM 8 C C14 6IY . . . G 3 148.68 147.182 103.382 1 70.82 ? C14 6IY 903 A 1 HETATM 9 C C15 6IY . . . G 3 149.819 146.593 104.211 1 70.82 ? C15 6IY 903 A 1 HETATM 10 C C16 6IY . . . G 3 149.235 146.104 105.528 1 70.82 ? C16 6IY 903 A 1 HETATM 11 C C17 6IY . . . G 3 150.328 145.76 106.533 1 70.82 ? C17 6IY 903 A 1 HETATM 12 C C18 6IY . . . G 3 149.923 144.594 107.432 1 70.82 ? C18 6IY 903 A 1 HETATM 13 C C19 6IY . . . G 3 148.884 144.944 108.482 1 70.82 ? C19 6IY 903 A 1 HETATM 14 C C2 6IY . . . G 3 148.509 148.922 109.865 1 70.82 ? C2 6IY 903 A 1 HETATM 15 C C20 6IY . . . G 3 149.396 144.543 109.858 1 70.82 ? C20 6IY 903 A 1 HETATM 16 C C21 6IY . . . G 3 148.256 144.654 110.843 1 70.82 ? C21 6IY 903 A 1 HETATM 17 C C22 6IY . . . G 3 148.76 144.422 112.252 1 70.82 ? C22 6IY 903 A 1 HETATM 18 C C23 6IY . . . G 3 147.634 144.89 113.144 1 70.82 ? C23 6IY 903 A 1 HETATM 19 C C24 6IY . . . G 3 147.731 144.337 114.56 1 70.82 ? C24 6IY 903 A 1 HETATM 20 C C25 6IY . . . G 3 146.431 143.624 114.967 1 70.82 ? C25 6IY 903 A 1 HETATM 21 C C26 6IY . . . G 3 146.343 143.622 116.479 1 70.82 ? C26 6IY 903 A 1 HETATM 22 C C27 6IY . . . G 3 145.058 143.001 116.991 1 70.82 ? C27 6IY 903 A 1 HETATM 23 C C28 6IY . . . G 3 145.097 141.487 116.898 1 70.82 ? C28 6IY 903 A 1 HETATM 24 C C3 6IY . . . G 3 149.438 149.982 109.294 1 70.82 ? C3 6IY 903 A 1 HETATM 25 C C4 6IY . . . G 3 148.926 150.443 107.935 1 70.82 ? C4 6IY 903 A 1 HETATM 26 C C5 6IY . . . G 3 149.36 149.505 106.813 1 70.82 ? C5 6IY 903 A 1 HETATM 27 C C6 6IY . . . G 3 150.405 150.102 105.874 1 70.82 ? C6 6IY 903 A 1 HETATM 28 C C7 6IY . . . G 3 149.75 150.583 104.586 1 70.82 ? C7 6IY 903 A 1 HETATM 29 C C8 6IY . . . G 3 149.576 150.263 102.227 1 70.82 ? C8 6IY 903 A 1 HETATM 30 C C9 6IY . . . G 3 150.164 149.147 101.37 1 70.82 ? C9 6IY 903 A 1 HETATM 31 O O1 6IY . . . G 3 150.378 150.343 103.366 1 70.82 ? O1 6IY 903 A 1 HETATM 32 O O2 6IY . . . G 3 149.692 149.818 99.159 1 70.82 ? O2 6IY 903 A 1 HETATM 33 O O3 6IY . . . G 3 148.599 149.086 96.953 1 70.82 ? O3 6IY 903 A 1 HETATM 34 O O4 6IY . . . G 3 150.79 148.654 97.159 1 70.82 ? O4 6IY 903 A 1 HETATM 35 O O5 6IY . . . G 3 149.225 147.213 98.558 1 70.82 ? O5 6IY 903 A 1 HETATM 36 O O6 6IY . . . G 3 149.142 148.238 101.064 1 70.82 ? O6 6IY 903 A 1 HETATM 37 O O7 6IY . . . G 3 149.075 146.036 101.371 1 70.82 ? O7 6IY 903 A 1 HETATM 38 P P 6IY . . . G 3 149.573 148.7 97.961 1 70.82 ? P 6IY 903 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 38 #