data_7L2X # _model_server_result.job_id chAR84Y2Xeg1GnvKrINVVQ _model_server_result.datetime_utc '2024-11-04 22:56:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":903}' # _entry.id 7L2X # _exptl.entry_id 7L2X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 195.214 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-deoxy-1-(methylamino)-D-allitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L2X _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H17 N O5' _chem_comp.formula_weight 195.214 _chem_comp.id XPJ _chem_comp.mon_nstd_flag . _chem_comp.name 1-deoxy-1-(methylamino)-D-allitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-Methyl-D-glucamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C4 XPJ sing 559 n n N C6 XPJ sing 560 n n O2 C2 XPJ sing 561 n n C4 C2 XPJ sing 562 n n C2 C XPJ sing 563 n n O C XPJ sing 564 n n C C1 XPJ sing 565 n n O1 C1 XPJ sing 566 n n C1 C3 XPJ sing 567 n n C3 O3 XPJ sing 568 n n C3 C5 XPJ sing 569 n n C5 O4 XPJ sing 570 n n C1 H1 XPJ sing 571 n n C2 H2 XPJ sing 572 n n C3 H3 XPJ sing 573 n n C4 H4 XPJ sing 574 n n C4 H5 XPJ sing 575 n n C5 H6 XPJ sing 576 n n C5 H7 XPJ sing 577 n n C6 H8 XPJ sing 578 n n C6 H9 XPJ sing 579 n n C6 H10 XPJ sing 580 n n N H11 XPJ sing 581 n n C H13 XPJ sing 582 n n O H14 XPJ sing 583 n n O1 H15 XPJ sing 584 n n O2 H16 XPJ sing 585 n n O3 H17 XPJ sing 586 n n O4 H18 XPJ sing 587 n n # _atom_sites.entry_id 7L2X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6EU A 1 901 901 6EU 6EU . F 3 6IY A 1 902 1001 6IY 6IY . G 3 6IY A 1 903 1001 6IY 6IY . H 2 6EU D 1 901 901 6EU 6EU . I 3 6IY D 1 902 1001 6IY 6IY . J 4 XPJ D 1 903 1 XPJ 656 . K 2 6EU B 1 901 901 6EU 6EU . L 3 6IY B 1 902 1001 6IY 6IY . M 2 6EU C 1 901 901 6EU 6EU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XPJ . . . J 4 133.622 133.615 108.351 1 60.09 ? C1 XPJ 903 D 1 HETATM 2 C C2 XPJ . . . J 4 133.832 132.316 106.227 1 60.09 ? C2 XPJ 903 D 1 HETATM 3 C C3 XPJ . . . J 4 133.413 133.361 109.842 1 60.09 ? C3 XPJ 903 D 1 HETATM 4 C C4 XPJ . . . J 4 133.856 133.677 105.535 1 60.09 ? C4 XPJ 903 D 1 HETATM 5 C C5 XPJ . . . J 4 134.432 134.167 110.645 1 60.09 ? C5 XPJ 903 D 1 HETATM 6 C C6 XPJ . . . J 4 136.2 133.361 105.707 1 60.09 ? C6 XPJ 903 D 1 HETATM 7 N N XPJ . . . J 4 135.129 133.854 104.86 1 60.09 ? N XPJ 903 D 1 HETATM 8 C C XPJ . . . J 4 133.083 132.431 107.552 1 60.09 ? C XPJ 903 D 1 HETATM 9 O O XPJ . . . J 4 131.72 132.62 107.298 1 60.09 ? O XPJ 903 D 1 HETATM 10 O O1 XPJ . . . J 4 134.989 133.779 108.094 1 60.09 ? O1 XPJ 903 D 1 HETATM 11 O O2 XPJ . . . J 4 133.183 131.387 105.405 1 60.09 ? O2 XPJ 903 D 1 HETATM 12 O O3 XPJ . . . J 4 132.119 133.753 110.206 1 60.09 ? O3 XPJ 903 D 1 HETATM 13 O O4 XPJ . . . J 4 135.29 133.292 111.323 1 60.09 ? O4 XPJ 903 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 13 #