data_7L31 # _model_server_result.job_id dR0rKH-c0o9hfSHnDzXjJQ _model_server_result.datetime_utc '2024-10-19 16:30:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":503}' # _entry.id 7L31 # _exptl.entry_id 7L31 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 334.412 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STRYCHNINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L31 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 K N N ? 4 N N N ? 4 Q N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 145 A CYS 145 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 205 A CYS 205 1_555 A SG CYS 216 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 145 B CYS 145 1_555 B SG CYS 159 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 205 B CYS 205 1_555 B SG CYS 216 B CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 D SG CYS 205 D CYS 205 1_555 D SG CYS 216 D CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 E SG CYS 181 E CYS 161 1_555 E SG CYS 195 E CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 45 A ASN 45 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 76 A ASN 76 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 B ND2 ASN 45 B ASN 45 1_555 I C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 B ND2 ASN 76 B ASN 76 1_555 J C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 C ND2 ASN 45 C ASN 45 1_555 L C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale6 C ND2 ASN 76 C ASN 76 1_555 M C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 D ND2 ASN 45 D ASN 45 1_555 O C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 D ND2 ASN 76 D ASN 76 1_555 P C1 NAG . D NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 E ND2 ASN 240 E ASN 220 1_555 S C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C21 H22 N2 O2' _chem_comp.formula_weight 334.412 _chem_comp.id SY9 _chem_comp.mon_nstd_flag . _chem_comp.name STRYCHNINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7L31 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 NAG A 1 501 501 NAG NAG . G 3 NAG A 1 502 502 NAG NAG . H 4 SY9 A 1 503 601 SY9 SY9 . I 3 NAG B 1 501 501 NAG NAG . J 3 NAG B 1 502 502 NAG NAG . K 4 SY9 B 1 503 601 SY9 SY9 . L 3 NAG C 1 501 501 NAG NAG . M 3 NAG C 1 502 502 NAG NAG . N 4 SY9 C 1 503 601 SY9 SY9 . O 3 NAG D 1 501 501 NAG NAG . P 3 NAG D 1 502 502 NAG NAG . Q 4 SY9 D 1 503 601 SY9 SY9 . R 4 SY9 D 1 504 601 SY9 SY9 . S 3 NAG E 1 501 501 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAV SY9 . . . N 4 87.346 90.263 140.847 1 42.13 ? CAV SY9 503 C 1 HETATM 2 C CAU SY9 . . . N 4 86.568 89.227 140.046 1 42.13 ? CAU SY9 503 C 1 HETATM 3 C CAT SY9 . . . N 4 87.513 88.573 139 1 42.13 ? CAT SY9 503 C 1 HETATM 4 C CAN SY9 . . . N 4 88.484 87.747 139.816 1 42.13 ? CAN SY9 503 C 1 HETATM 5 C CAK SY9 . . . N 4 89.314 88.537 140.863 1 42.13 ? CAK SY9 503 C 1 HETATM 6 N NAH SY9 . . . N 4 89.432 87.5 141.911 1 42.13 ? NAH SY9 503 C 1 HETATM 7 C CAA SY9 . . . N 4 88.938 87.985 143.123 1 42.13 ? CAA SY9 503 C 1 HETATM 8 C CAF SY9 . . . N 4 88.859 87.393 144.371 1 42.13 ? CAF SY9 503 C 1 HETATM 9 C CAE SY9 . . . N 4 88.298 88.107 145.417 1 42.13 ? CAE SY9 503 C 1 HETATM 10 C CAD SY9 . . . N 4 87.812 89.387 145.217 1 42.13 ? CAD SY9 503 C 1 HETATM 11 C CAC SY9 . . . N 4 87.872 90.01 143.979 1 42.13 ? CAC SY9 503 C 1 HETATM 12 C CAB SY9 . . . N 4 88.429 89.298 142.926 1 42.13 ? CAB SY9 503 C 1 HETATM 13 C CAG SY9 . . . N 4 88.615 89.721 141.516 1 42.13 ? CAG SY9 503 C 1 HETATM 14 C CAW SY9 . . . N 4 89.598 90.911 141.52 1 42.13 ? CAW SY9 503 C 1 HETATM 15 C CAX SY9 . . . N 4 88.949 91.993 140.627 1 42.13 ? CAX SY9 503 C 1 HETATM 16 N NAY SY9 . . . N 4 87.735 91.412 139.981 1 42.13 ? NAY SY9 503 C 1 HETATM 17 C CAS SY9 . . . N 4 88.117 91.11 138.575 1 42.13 ? CAS SY9 503 C 1 HETATM 18 C CAR SY9 . . . N 4 88.205 89.665 138.2 1 42.13 ? CAR SY9 503 C 1 HETATM 19 C CAQ SY9 . . . N 4 89.106 89.309 137.277 1 42.13 ? CAQ SY9 503 C 1 HETATM 20 C CAP SY9 . . . N 4 89.409 87.853 136.984 1 42.13 ? CAP SY9 503 C 1 HETATM 21 O OAO SY9 . . . N 4 90.203 87.381 138.075 1 42.13 ? OAO SY9 503 C 1 HETATM 22 C CAM SY9 . . . N 4 89.412 86.767 139.086 1 42.13 ? CAM SY9 503 C 1 HETATM 23 C CAL SY9 . . . N 4 90.372 86.064 140.096 1 42.13 ? CAL SY9 503 C 1 HETATM 24 C CAI SY9 . . . N 4 89.954 86.245 141.574 1 42.13 ? CAI SY9 503 C 1 HETATM 25 O OAJ SY9 . . . N 4 90.061 85.353 142.389 1 42.13 ? OAJ SY9 503 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #