data_7L38 # _model_server_result.job_id J09My_5OlRg5xQlFbf0oOw _model_server_result.datetime_utc '2024-10-13 08:17:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7L38 # _exptl.entry_id 7L38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7L38 _cell.length_a 59.835 _cell.length_b 59.835 _cell.length_c 96.334 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 7L38 _atom_sites.fract_transf_matrix[1][1] 0.016713 _atom_sites.fract_transf_matrix[1][2] 0.009649 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 201 1 TRS TRS . C 3 BME A 1 202 1 BME BME . D 3 BME A 1 203 2 BME BME . E 4 CL A 1 204 1 CL CL . F 5 HOH A 1 301 52 HOH HOH . F 5 HOH A 2 302 62 HOH HOH . F 5 HOH A 3 303 37 HOH HOH . F 5 HOH A 4 304 131 HOH HOH . F 5 HOH A 5 305 40 HOH HOH . F 5 HOH A 6 306 78 HOH HOH . F 5 HOH A 7 307 33 HOH HOH . F 5 HOH A 8 308 120 HOH HOH . F 5 HOH A 9 309 68 HOH HOH . F 5 HOH A 10 310 47 HOH HOH . F 5 HOH A 11 311 39 HOH HOH . F 5 HOH A 12 312 77 HOH HOH . F 5 HOH A 13 313 65 HOH HOH . F 5 HOH A 14 314 53 HOH HOH . F 5 HOH A 15 315 27 HOH HOH . F 5 HOH A 16 316 61 HOH HOH . F 5 HOH A 17 317 86 HOH HOH . F 5 HOH A 18 318 63 HOH HOH . F 5 HOH A 19 319 31 HOH HOH . F 5 HOH A 20 320 17 HOH HOH . F 5 HOH A 21 321 73 HOH HOH . F 5 HOH A 22 322 42 HOH HOH . F 5 HOH A 23 323 4 HOH HOH . F 5 HOH A 24 324 132 HOH HOH . F 5 HOH A 25 325 30 HOH HOH . F 5 HOH A 26 326 23 HOH HOH . F 5 HOH A 27 327 55 HOH HOH . F 5 HOH A 28 328 48 HOH HOH . F 5 HOH A 29 329 97 HOH HOH . F 5 HOH A 30 330 95 HOH HOH . F 5 HOH A 31 331 22 HOH HOH . F 5 HOH A 32 332 116 HOH HOH . F 5 HOH A 33 333 115 HOH HOH . F 5 HOH A 34 334 74 HOH HOH . F 5 HOH A 35 335 32 HOH HOH . F 5 HOH A 36 336 46 HOH HOH . F 5 HOH A 37 337 38 HOH HOH . F 5 HOH A 38 338 26 HOH HOH . F 5 HOH A 39 339 80 HOH HOH . F 5 HOH A 40 340 114 HOH HOH . F 5 HOH A 41 341 50 HOH HOH . F 5 HOH A 42 342 9 HOH HOH . F 5 HOH A 43 343 103 HOH HOH . F 5 HOH A 44 344 69 HOH HOH . F 5 HOH A 45 345 100 HOH HOH . F 5 HOH A 46 346 51 HOH HOH . F 5 HOH A 47 347 6 HOH HOH . F 5 HOH A 48 348 137 HOH HOH . F 5 HOH A 49 349 54 HOH HOH . F 5 HOH A 50 350 11 HOH HOH . F 5 HOH A 51 351 25 HOH HOH . F 5 HOH A 52 352 10 HOH HOH . F 5 HOH A 53 353 58 HOH HOH . F 5 HOH A 54 354 134 HOH HOH . F 5 HOH A 55 355 104 HOH HOH . F 5 HOH A 56 356 127 HOH HOH . F 5 HOH A 57 357 125 HOH HOH . F 5 HOH A 58 358 29 HOH HOH . F 5 HOH A 59 359 24 HOH HOH . F 5 HOH A 60 360 110 HOH HOH . F 5 HOH A 61 361 8 HOH HOH . F 5 HOH A 62 362 12 HOH HOH . F 5 HOH A 63 363 67 HOH HOH . F 5 HOH A 64 364 121 HOH HOH . F 5 HOH A 65 365 111 HOH HOH . F 5 HOH A 66 366 101 HOH HOH . F 5 HOH A 67 367 99 HOH HOH . F 5 HOH A 68 368 84 HOH HOH . F 5 HOH A 69 369 72 HOH HOH . F 5 HOH A 70 370 28 HOH HOH . F 5 HOH A 71 371 135 HOH HOH . F 5 HOH A 72 372 35 HOH HOH . F 5 HOH A 73 373 76 HOH HOH . F 5 HOH A 74 374 41 HOH HOH . F 5 HOH A 75 375 60 HOH HOH . F 5 HOH A 76 376 112 HOH HOH . F 5 HOH A 77 377 138 HOH HOH . F 5 HOH A 78 378 128 HOH HOH . F 5 HOH A 79 379 79 HOH HOH . F 5 HOH A 80 380 15 HOH HOH . F 5 HOH A 81 381 56 HOH HOH . F 5 HOH A 82 382 13 HOH HOH . F 5 HOH A 83 383 57 HOH HOH . F 5 HOH A 84 384 16 HOH HOH . F 5 HOH A 85 385 64 HOH HOH . F 5 HOH A 86 386 59 HOH HOH . F 5 HOH A 87 387 66 HOH HOH . F 5 HOH A 88 388 49 HOH HOH . F 5 HOH A 89 389 7 HOH HOH . F 5 HOH A 90 390 21 HOH HOH . F 5 HOH A 91 391 119 HOH HOH . F 5 HOH A 92 392 85 HOH HOH . F 5 HOH A 93 393 75 HOH HOH . F 5 HOH A 94 394 20 HOH HOH . F 5 HOH A 95 395 105 HOH HOH . F 5 HOH A 96 396 3 HOH HOH . F 5 HOH A 97 397 81 HOH HOH . F 5 HOH A 98 398 88 HOH HOH . F 5 HOH A 99 399 124 HOH HOH . F 5 HOH A 100 400 106 HOH HOH . F 5 HOH A 101 401 44 HOH HOH . F 5 HOH A 102 402 87 HOH HOH . F 5 HOH A 103 403 5 HOH HOH . F 5 HOH A 104 404 82 HOH HOH . F 5 HOH A 105 405 14 HOH HOH . F 5 HOH A 106 406 133 HOH HOH . F 5 HOH A 107 407 2 HOH HOH . F 5 HOH A 108 408 108 HOH HOH . F 5 HOH A 109 409 96 HOH HOH . F 5 HOH A 110 410 136 HOH HOH . F 5 HOH A 111 411 36 HOH HOH . F 5 HOH A 112 412 107 HOH HOH . F 5 HOH A 113 413 1 HOH HOH . F 5 HOH A 114 414 92 HOH HOH . F 5 HOH A 115 415 102 HOH HOH . F 5 HOH A 116 416 109 HOH HOH . F 5 HOH A 117 417 113 HOH HOH . F 5 HOH A 118 418 83 HOH HOH . F 5 HOH A 119 419 89 HOH HOH . F 5 HOH A 120 420 70 HOH HOH . F 5 HOH A 121 421 123 HOH HOH . F 5 HOH A 122 422 130 HOH HOH . F 5 HOH A 123 423 118 HOH HOH . F 5 HOH A 124 424 45 HOH HOH . F 5 HOH A 125 425 43 HOH HOH . F 5 HOH A 126 426 117 HOH HOH . F 5 HOH A 127 427 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . A . D 3 25.701 -15.842 15.379 0.49 38.69 ? C1 BME 203 A 1 HETATM 2 C C1 BME . B . D 3 26.043 -15.858 16.058 0.51 37.94 ? C1 BME 203 A 1 HETATM 3 C C2 BME . A . D 3 25.933 -14.443 14.827 0.49 39.31 ? C2 BME 203 A 1 HETATM 4 C C2 BME . B . D 3 25.798 -14.361 15.962 0.51 37.89 ? C2 BME 203 A 1 HETATM 5 O O1 BME . A . D 3 26.46 -15.979 16.545 0.49 38.35 ? O1 BME 203 A 1 HETATM 6 O O1 BME . B . D 3 25.852 -16.408 14.786 0.51 38.36 ? O1 BME 203 A 1 HETATM 7 S S2 BME . A . D 3 27.721 -14.192 14.627 0.49 41.16 ? S2 BME 203 A 1 HETATM 8 S S2 BME . B . D 3 26.847 -13.708 14.636 0.51 39.32 ? S2 BME 203 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #