data_7L4U # _model_server_result.job_id uNINy4wcxJ9C7UYDukY9Pg _model_server_result.datetime_utc '2024-11-24 22:06:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7L4U # _exptl.entry_id 7L4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.857 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-5-(3-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidin-1-yl}-3-oxopropyl)pyrrolidin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L4U _cell.length_a 92.528 _cell.length_b 127.453 _cell.length_c 135.911 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C19 H24 Cl F N2 O3' _chem_comp.formula_weight 382.857 _chem_comp.id XP7 _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-5-(3-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidin-1-yl}-3-oxopropyl)pyrrolidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 XP7 doub 376 n y C2 C5 XP7 sing 377 n y F25 C5 XP7 sing 378 n n C1 C4 XP7 sing 379 n y C5 C3 XP7 doub 380 n y C11 C13 XP7 sing 381 n n C11 C15 XP7 sing 382 n n C18 O24 XP7 sing 383 n n C18 C15 XP7 sing 384 n n C4 O24 XP7 sing 385 n n C4 C6 XP7 doub 386 n y C3 C6 XP7 sing 387 n y C13 N21 XP7 sing 388 n n C15 C12 XP7 sing 389 n n C6 CL26 XP7 sing 390 n n C9 C10 XP7 sing 391 n n C9 C7 XP7 sing 392 n n C10 C16 XP7 sing 393 n n C16 N20 XP7 sing 394 n n C16 C19 XP7 sing 395 n n C17 C19 XP7 sing 396 n n C17 C8 XP7 sing 397 n n N21 C8 XP7 sing 398 n n N21 C14 XP7 sing 399 n n C7 N20 XP7 sing 400 n n C7 O22 XP7 doub 401 n n C12 C14 XP7 sing 402 n n C8 O23 XP7 doub 403 n n C10 H1 XP7 sing 404 n n C10 H2 XP7 sing 405 n n C13 H3 XP7 sing 406 n n C13 H4 XP7 sing 407 n n C15 H5 XP7 sing 408 n n C17 H6 XP7 sing 409 n n C17 H7 XP7 sing 410 n n C1 H8 XP7 sing 411 n n C2 H9 XP7 sing 412 n n C3 H10 XP7 sing 413 n n C9 H11 XP7 sing 414 n n C9 H12 XP7 sing 415 n n C11 H13 XP7 sing 416 n n C11 H14 XP7 sing 417 n n C12 H15 XP7 sing 418 n n C12 H16 XP7 sing 419 n n C14 H17 XP7 sing 420 n n C14 H18 XP7 sing 421 n n C16 H19 XP7 sing 422 n n C18 H20 XP7 sing 423 n n C18 H21 XP7 sing 424 n n C19 H22 XP7 sing 425 n n C19 H23 XP7 sing 426 n n N20 H24 XP7 sing 427 n n # _atom_sites.entry_id 7L4U _atom_sites.fract_transf_matrix[1][1] 0.010808 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XP7 A 1 401 301 XP7 LIG . D 3 CL A 1 402 298 CL CL . E 2 XP7 B 1 401 301 XP7 LIG . F 4 HOH A 1 501 133 HOH HOH . F 4 HOH A 2 502 94 HOH HOH . F 4 HOH A 3 503 128 HOH HOH . F 4 HOH A 4 504 6 HOH HOH . F 4 HOH A 5 505 86 HOH HOH . F 4 HOH A 6 506 83 HOH HOH . F 4 HOH A 7 507 132 HOH HOH . F 4 HOH A 8 508 123 HOH HOH . F 4 HOH A 9 509 114 HOH HOH . F 4 HOH A 10 510 152 HOH HOH . F 4 HOH A 11 511 130 HOH HOH . F 4 HOH A 12 512 139 HOH HOH . F 4 HOH A 13 513 129 HOH HOH . F 4 HOH A 14 514 17 HOH HOH . F 4 HOH A 15 515 23 HOH HOH . F 4 HOH A 16 516 102 HOH HOH . F 4 HOH A 17 517 151 HOH HOH . F 4 HOH A 18 518 107 HOH HOH . F 4 HOH A 19 519 72 HOH HOH . F 4 HOH A 20 520 31 HOH HOH . F 4 HOH A 21 521 135 HOH HOH . F 4 HOH A 22 522 110 HOH HOH . F 4 HOH A 23 523 28 HOH HOH . F 4 HOH A 24 524 35 HOH HOH . F 4 HOH A 25 525 154 HOH HOH . F 4 HOH A 26 526 22 HOH HOH . F 4 HOH A 27 527 24 HOH HOH . F 4 HOH A 28 528 19 HOH HOH . F 4 HOH A 29 529 18 HOH HOH . F 4 HOH A 30 530 134 HOH HOH . F 4 HOH A 31 531 20 HOH HOH . F 4 HOH A 32 532 131 HOH HOH . F 4 HOH A 33 533 62 HOH HOH . F 4 HOH A 34 534 26 HOH HOH . F 4 HOH A 35 535 160 HOH HOH . F 4 HOH A 36 536 68 HOH HOH . F 4 HOH A 37 537 30 HOH HOH . F 4 HOH A 38 538 147 HOH HOH . F 4 HOH A 39 539 37 HOH HOH . F 4 HOH A 40 540 63 HOH HOH . F 4 HOH A 41 541 70 HOH HOH . F 4 HOH A 42 542 48 HOH HOH . F 4 HOH A 43 543 155 HOH HOH . F 4 HOH A 44 544 33 HOH HOH . F 4 HOH A 45 545 158 HOH HOH . F 4 HOH A 46 546 52 HOH HOH . F 4 HOH A 47 547 39 HOH HOH . F 4 HOH A 48 548 113 HOH HOH . F 4 HOH A 49 549 106 HOH HOH . F 4 HOH A 50 550 118 HOH HOH . F 4 HOH A 51 551 120 HOH HOH . F 4 HOH A 52 552 56 HOH HOH . F 4 HOH A 53 553 38 HOH HOH . F 4 HOH A 54 554 119 HOH HOH . F 4 HOH A 55 555 121 HOH HOH . F 4 HOH A 56 556 150 HOH HOH . F 4 HOH A 57 557 95 HOH HOH . F 4 HOH A 58 558 50 HOH HOH . F 4 HOH A 59 559 36 HOH HOH . F 4 HOH A 60 560 115 HOH HOH . F 4 HOH A 61 561 53 HOH HOH . F 4 HOH A 62 562 149 HOH HOH . F 4 HOH A 63 563 99 HOH HOH . F 4 HOH A 64 564 144 HOH HOH . F 4 HOH A 65 565 44 HOH HOH . F 4 HOH A 66 566 64 HOH HOH . F 4 HOH A 67 567 47 HOH HOH . F 4 HOH A 68 568 51 HOH HOH . F 4 HOH A 69 569 7 HOH HOH . F 4 HOH A 70 570 146 HOH HOH . F 4 HOH A 71 571 104 HOH HOH . F 4 HOH A 72 572 92 HOH HOH . F 4 HOH A 73 573 145 HOH HOH . F 4 HOH A 74 574 111 HOH HOH . F 4 HOH A 75 575 78 HOH HOH . F 4 HOH A 76 576 136 HOH HOH . F 4 HOH A 77 577 67 HOH HOH . F 4 HOH A 78 578 65 HOH HOH . F 4 HOH A 79 579 117 HOH HOH . F 4 HOH A 80 580 143 HOH HOH . F 4 HOH A 81 581 98 HOH HOH . F 4 HOH A 82 582 79 HOH HOH . F 4 HOH A 83 583 76 HOH HOH . F 4 HOH A 84 584 141 HOH HOH . F 4 HOH A 85 585 46 HOH HOH . F 4 HOH A 86 586 80 HOH HOH . F 4 HOH A 87 587 88 HOH HOH . F 4 HOH A 88 588 157 HOH HOH . F 4 HOH A 89 589 159 HOH HOH . F 4 HOH A 90 590 101 HOH HOH . F 4 HOH A 91 591 112 HOH HOH . F 4 HOH A 92 592 103 HOH HOH . F 4 HOH A 93 593 57 HOH HOH . F 4 HOH A 94 594 100 HOH HOH . G 4 HOH B 1 501 137 HOH HOH . G 4 HOH B 2 502 153 HOH HOH . G 4 HOH B 3 503 29 HOH HOH . G 4 HOH B 4 504 140 HOH HOH . G 4 HOH B 5 505 12 HOH HOH . G 4 HOH B 6 506 84 HOH HOH . G 4 HOH B 7 507 82 HOH HOH . G 4 HOH B 8 508 40 HOH HOH . G 4 HOH B 9 509 138 HOH HOH . G 4 HOH B 10 510 27 HOH HOH . G 4 HOH B 11 511 15 HOH HOH . G 4 HOH B 12 512 1 HOH HOH . G 4 HOH B 13 513 10 HOH HOH . G 4 HOH B 14 514 127 HOH HOH . G 4 HOH B 15 515 21 HOH HOH . G 4 HOH B 16 516 11 HOH HOH . G 4 HOH B 17 517 3 HOH HOH . G 4 HOH B 18 518 25 HOH HOH . G 4 HOH B 19 519 43 HOH HOH . G 4 HOH B 20 520 59 HOH HOH . G 4 HOH B 21 521 87 HOH HOH . G 4 HOH B 22 522 42 HOH HOH . G 4 HOH B 23 523 34 HOH HOH . G 4 HOH B 24 524 4 HOH HOH . G 4 HOH B 25 525 90 HOH HOH . G 4 HOH B 26 526 32 HOH HOH . G 4 HOH B 27 527 69 HOH HOH . G 4 HOH B 28 528 66 HOH HOH . G 4 HOH B 29 529 124 HOH HOH . G 4 HOH B 30 530 81 HOH HOH . G 4 HOH B 31 531 91 HOH HOH . G 4 HOH B 32 532 109 HOH HOH . G 4 HOH B 33 533 9 HOH HOH . G 4 HOH B 34 534 58 HOH HOH . G 4 HOH B 35 535 74 HOH HOH . G 4 HOH B 36 536 108 HOH HOH . G 4 HOH B 37 537 73 HOH HOH . G 4 HOH B 38 538 14 HOH HOH . G 4 HOH B 39 539 2 HOH HOH . G 4 HOH B 40 540 71 HOH HOH . G 4 HOH B 41 541 61 HOH HOH . G 4 HOH B 42 542 126 HOH HOH . G 4 HOH B 43 543 60 HOH HOH . G 4 HOH B 44 544 41 HOH HOH . G 4 HOH B 45 545 116 HOH HOH . G 4 HOH B 46 546 96 HOH HOH . G 4 HOH B 47 547 45 HOH HOH . G 4 HOH B 48 548 156 HOH HOH . G 4 HOH B 49 549 77 HOH HOH . G 4 HOH B 50 550 5 HOH HOH . G 4 HOH B 51 551 105 HOH HOH . G 4 HOH B 52 552 55 HOH HOH . G 4 HOH B 53 553 142 HOH HOH . G 4 HOH B 54 554 122 HOH HOH . G 4 HOH B 55 555 93 HOH HOH . G 4 HOH B 56 556 16 HOH HOH . G 4 HOH B 57 557 13 HOH HOH . G 4 HOH B 58 558 97 HOH HOH . G 4 HOH B 59 559 85 HOH HOH . G 4 HOH B 60 560 54 HOH HOH . G 4 HOH B 61 561 49 HOH HOH . G 4 HOH B 62 562 75 HOH HOH . G 4 HOH B 63 563 125 HOH HOH . G 4 HOH B 64 564 148 HOH HOH . G 4 HOH B 65 565 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 XP7 . . . E 2 12.244 138.386 325.822 1 58.87 ? C4 XP7 401 B 1 HETATM 2 C C5 XP7 . . . E 2 10.394 137.251 327.585 1 66.22 ? C5 XP7 401 B 1 HETATM 3 C C6 XP7 . . . E 2 12.275 138.627 327.176 1 60.41 ? C6 XP7 401 B 1 HETATM 4 C C7 XP7 . . . E 2 19.89 137.984 315.047 1 37.55 ? C7 XP7 401 B 1 HETATM 5 C C8 XP7 . . . E 2 17.911 138.085 320.712 1 43.56 ? C8 XP7 401 B 1 HETATM 6 C C10 XP7 . . . E 2 18.433 136.687 316.5 1 36.14 ? C10 XP7 401 B 1 HETATM 7 C C13 XP7 . . . E 2 15.669 139.176 320.726 1 48.44 ? C13 XP7 401 B 1 HETATM 8 C C15 XP7 . . . E 2 14.341 139.147 322.906 1 49.45 ? C15 XP7 401 B 1 HETATM 9 C C17 XP7 . . . E 2 17.642 137.819 319.256 1 41.25 ? C17 XP7 401 B 1 HETATM 10 C C1 XP7 . . . E 2 11.241 137.551 325.349 1 63.34 ? C1 XP7 401 B 1 HETATM 11 C C2 XP7 . . . E 2 10.328 136.993 326.23 1 62.36 ? C2 XP7 401 B 1 HETATM 12 C C3 XP7 . . . E 2 11.372 138.085 328.068 1 65.29 ? C3 XP7 401 B 1 HETATM 13 C C9 XP7 . . . E 2 19.053 136.706 315.123 1 36.82 ? C9 XP7 401 B 1 HETATM 14 C C11 XP7 . . . E 2 14.317 138.933 321.408 1 49.59 ? C11 XP7 401 B 1 HETATM 15 C C12 XP7 . . . E 2 15.609 138.551 323.497 1 48.46 ? C12 XP7 401 B 1 HETATM 16 C C14 XP7 . . . E 2 16.887 138.918 322.781 1 45.42 ? C14 XP7 401 B 1 HETATM 17 C C16 XP7 . . . E 2 18.475 138.168 316.914 1 38.52 ? C16 XP7 401 B 1 HETATM 18 C C18 XP7 . . . E 2 13.113 138.592 323.631 1 48.95 ? C18 XP7 401 B 1 HETATM 19 C C19 XP7 . . . E 2 18.74 138.401 318.39 1 38.41 ? C19 XP7 401 B 1 HETATM 20 N N20 XP7 . . . E 2 19.621 138.688 316.196 1 36.59 ? N20 XP7 401 B 1 HETATM 21 N N21 XP7 . . . E 2 16.798 138.566 321.398 1 45.03 ? N21 XP7 401 B 1 HETATM 22 O O22 XP7 . . . E 2 20.681 138.304 314.156 1 34.29 ? O22 XP7 401 B 1 HETATM 23 O O23 XP7 . . . E 2 19.013 137.861 321.208 1 41.41 ? O23 XP7 401 B 1 HETATM 24 O O24 XP7 . . . E 2 13.217 138.99 325.018 1 52.61 ? O24 XP7 401 B 1 HETATM 25 F F25 XP7 . . . E 2 9.512 136.707 328.451 1 78.1 ? F25 XP7 401 B 1 HETATM 26 CL CL26 XP7 . . . E 2 13.462 139.653 327.801 1 69.17 ? CL26 XP7 401 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #