data_7L4W # _model_server_result.job_id WYeqRNk8QMcd_Bgb45U39w _model_server_result.datetime_utc '2024-11-22 06:43:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7L4W # _exptl.entry_id 7L4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.84 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2s,4R)-2-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidine-1-carbonyl}-7-oxa-5-azaspiro[3.4]octan-6-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L4W _cell.length_a 92.623 _cell.length_b 127.215 _cell.length_c 135.961 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C19 H22 Cl F N2 O4' _chem_comp.formula_weight 396.84 _chem_comp.id XOV _chem_comp.mon_nstd_flag . _chem_comp.name (2s,4R)-2-{4-[(2-chloro-4-fluorophenoxy)methyl]piperidine-1-carbonyl}-7-oxa-5-azaspiro[3.4]octan-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F26 C5 XOV sing 376 n n C3 C5 XOV doub 377 n y C3 C6 XOV sing 378 n y C5 C2 XOV sing 379 n y CL27 C6 XOV sing 380 n n C6 C4 XOV doub 381 n y C2 C1 XOV doub 382 n y C4 C1 XOV sing 383 n y C4 O25 XOV sing 384 n n O25 C19 XOV sing 385 n n C10 C14 XOV sing 386 n n C10 C17 XOV sing 387 n n C19 C17 XOV sing 388 n n C14 N21 XOV sing 389 n n C17 C9 XOV sing 390 n n O23 C8 XOV doub 391 n n N21 C8 XOV sing 392 n n N21 C13 XOV sing 393 n n C9 C13 XOV sing 394 n n C8 C16 XOV sing 395 n n C16 C12 XOV sing 396 n n C16 C11 XOV sing 397 n n C12 C18 XOV sing 398 n n C11 C18 XOV sing 399 n n C18 C15 XOV sing 400 n n C18 N20 XOV sing 401 n n C15 O24 XOV sing 402 n n N20 C7 XOV sing 403 n n O24 C7 XOV sing 404 n n C7 O22 XOV doub 405 n n C10 H1 XOV sing 406 n n C10 H2 XOV sing 407 n n C13 H3 XOV sing 408 n n C13 H4 XOV sing 409 n n C15 H5 XOV sing 410 n n C15 H6 XOV sing 411 n n C17 H7 XOV sing 412 n n C1 H8 XOV sing 413 n n C2 H9 XOV sing 414 n n C3 H10 XOV sing 415 n n C9 H11 XOV sing 416 n n C9 H12 XOV sing 417 n n C11 H13 XOV sing 418 n n C11 H14 XOV sing 419 n n C12 H15 XOV sing 420 n n C12 H16 XOV sing 421 n n C14 H17 XOV sing 422 n n C14 H18 XOV sing 423 n n C16 H19 XOV sing 424 n n C19 H20 XOV sing 425 n n C19 H21 XOV sing 426 n n N20 H22 XOV sing 427 n n # _atom_sites.entry_id 7L4W _atom_sites.fract_transf_matrix[1][1] 0.010796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XOV A 1 401 301 XOV LIG . D 2 XOV B 1 401 301 XOV LIG . E 3 HOH A 1 501 84 HOH HOH . E 3 HOH A 2 502 40 HOH HOH . E 3 HOH A 3 503 11 HOH HOH . E 3 HOH A 4 504 23 HOH HOH . E 3 HOH A 5 505 29 HOH HOH . E 3 HOH A 6 506 51 HOH HOH . E 3 HOH A 7 507 16 HOH HOH . E 3 HOH A 8 508 63 HOH HOH . E 3 HOH A 9 509 28 HOH HOH . E 3 HOH A 10 510 43 HOH HOH . E 3 HOH A 11 511 85 HOH HOH . E 3 HOH A 12 512 66 HOH HOH . E 3 HOH A 13 513 7 HOH HOH . E 3 HOH A 14 514 52 HOH HOH . E 3 HOH A 15 515 121 HOH HOH . E 3 HOH A 16 516 68 HOH HOH . E 3 HOH A 17 517 122 HOH HOH . E 3 HOH A 18 518 19 HOH HOH . E 3 HOH A 19 519 25 HOH HOH . E 3 HOH A 20 520 83 HOH HOH . E 3 HOH A 21 521 2 HOH HOH . E 3 HOH A 22 522 6 HOH HOH . E 3 HOH A 23 523 55 HOH HOH . E 3 HOH A 24 524 116 HOH HOH . E 3 HOH A 25 525 35 HOH HOH . E 3 HOH A 26 526 59 HOH HOH . E 3 HOH A 27 527 115 HOH HOH . E 3 HOH A 28 528 14 HOH HOH . E 3 HOH A 29 529 96 HOH HOH . E 3 HOH A 30 530 67 HOH HOH . E 3 HOH A 31 531 87 HOH HOH . E 3 HOH A 32 532 9 HOH HOH . E 3 HOH A 33 533 75 HOH HOH . E 3 HOH A 34 534 50 HOH HOH . E 3 HOH A 35 535 41 HOH HOH . E 3 HOH A 36 536 21 HOH HOH . E 3 HOH A 37 537 24 HOH HOH . E 3 HOH A 38 538 57 HOH HOH . E 3 HOH A 39 539 119 HOH HOH . E 3 HOH A 40 540 120 HOH HOH . E 3 HOH A 41 541 69 HOH HOH . E 3 HOH A 42 542 18 HOH HOH . E 3 HOH A 43 543 118 HOH HOH . E 3 HOH A 44 544 117 HOH HOH . E 3 HOH A 45 545 10 HOH HOH . E 3 HOH A 46 546 95 HOH HOH . E 3 HOH A 47 547 126 HOH HOH . E 3 HOH A 48 548 92 HOH HOH . E 3 HOH A 49 549 90 HOH HOH . E 3 HOH A 50 550 91 HOH HOH . E 3 HOH A 51 551 86 HOH HOH . E 3 HOH A 52 552 94 HOH HOH . E 3 HOH A 53 553 89 HOH HOH . E 3 HOH A 54 554 80 HOH HOH . E 3 HOH A 55 555 81 HOH HOH . E 3 HOH A 56 556 93 HOH HOH . E 3 HOH A 57 557 82 HOH HOH . F 3 HOH B 1 501 123 HOH HOH . F 3 HOH B 2 502 113 HOH HOH . F 3 HOH B 3 503 103 HOH HOH . F 3 HOH B 4 504 98 HOH HOH . F 3 HOH B 5 505 64 HOH HOH . F 3 HOH B 6 506 56 HOH HOH . F 3 HOH B 7 507 20 HOH HOH . F 3 HOH B 8 508 3 HOH HOH . F 3 HOH B 9 509 8 HOH HOH . F 3 HOH B 10 510 105 HOH HOH . F 3 HOH B 11 511 61 HOH HOH . F 3 HOH B 12 512 74 HOH HOH . F 3 HOH B 13 513 27 HOH HOH . F 3 HOH B 14 514 33 HOH HOH . F 3 HOH B 15 515 76 HOH HOH . F 3 HOH B 16 516 54 HOH HOH . F 3 HOH B 17 517 26 HOH HOH . F 3 HOH B 18 518 15 HOH HOH . F 3 HOH B 19 519 49 HOH HOH . F 3 HOH B 20 520 34 HOH HOH . F 3 HOH B 21 521 112 HOH HOH . F 3 HOH B 22 522 4 HOH HOH . F 3 HOH B 23 523 5 HOH HOH . F 3 HOH B 24 524 39 HOH HOH . F 3 HOH B 25 525 36 HOH HOH . F 3 HOH B 26 526 31 HOH HOH . F 3 HOH B 27 527 13 HOH HOH . F 3 HOH B 28 528 45 HOH HOH . F 3 HOH B 29 529 53 HOH HOH . F 3 HOH B 30 530 101 HOH HOH . F 3 HOH B 31 531 12 HOH HOH . F 3 HOH B 32 532 60 HOH HOH . F 3 HOH B 33 533 1 HOH HOH . F 3 HOH B 34 534 47 HOH HOH . F 3 HOH B 35 535 124 HOH HOH . F 3 HOH B 36 536 62 HOH HOH . F 3 HOH B 37 537 30 HOH HOH . F 3 HOH B 38 538 17 HOH HOH . F 3 HOH B 39 539 104 HOH HOH . F 3 HOH B 40 540 71 HOH HOH . F 3 HOH B 41 541 72 HOH HOH . F 3 HOH B 42 542 22 HOH HOH . F 3 HOH B 43 543 99 HOH HOH . F 3 HOH B 44 544 46 HOH HOH . F 3 HOH B 45 545 73 HOH HOH . F 3 HOH B 46 546 38 HOH HOH . F 3 HOH B 47 547 44 HOH HOH . F 3 HOH B 48 548 114 HOH HOH . F 3 HOH B 49 549 70 HOH HOH . F 3 HOH B 50 550 42 HOH HOH . F 3 HOH B 51 551 106 HOH HOH . F 3 HOH B 52 552 32 HOH HOH . F 3 HOH B 53 553 37 HOH HOH . F 3 HOH B 54 554 100 HOH HOH . F 3 HOH B 55 555 110 HOH HOH . F 3 HOH B 56 556 127 HOH HOH . F 3 HOH B 57 557 78 HOH HOH . F 3 HOH B 58 558 131 HOH HOH . F 3 HOH B 59 559 108 HOH HOH . F 3 HOH B 60 560 58 HOH HOH . F 3 HOH B 61 561 97 HOH HOH . F 3 HOH B 62 562 77 HOH HOH . F 3 HOH B 63 563 65 HOH HOH . F 3 HOH B 64 564 130 HOH HOH . F 3 HOH B 65 565 102 HOH HOH . F 3 HOH B 66 566 109 HOH HOH . F 3 HOH B 67 567 107 HOH HOH . F 3 HOH B 68 568 48 HOH HOH . F 3 HOH B 69 569 125 HOH HOH . F 3 HOH B 70 570 129 HOH HOH . F 3 HOH B 71 571 79 HOH HOH . F 3 HOH B 72 572 88 HOH HOH . F 3 HOH B 73 573 111 HOH HOH . F 3 HOH B 74 574 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 XOV . . . D 2 -17.584 11.247 -8.12 1 64.89 ? C4 XOV 401 B 1 HETATM 2 C C5 XOV . . . D 2 -15.217 9.942 -7.483 1 76.93 ? C5 XOV 401 B 1 HETATM 3 C C6 XOV . . . D 2 -16.405 11.598 -8.781 1 67.1 ? C6 XOV 401 B 1 HETATM 4 C C7 XOV . . . D 2 -30.222 12.041 -9.97 1 46.93 ? C7 XOV 401 B 1 HETATM 5 C C8 XOV . . . D 2 -24.544 11.518 -10.842 1 47.34 ? C8 XOV 401 B 1 HETATM 6 C C10 XOV . . . D 2 -21.015 11.774 -10.038 1 52.13 ? C10 XOV 401 B 1 HETATM 7 C C13 XOV . . . D 2 -23.58 12.065 -8.591 1 50.19 ? C13 XOV 401 B 1 HETATM 8 C C15 XOV . . . D 2 -28.626 10.642 -9.108 1 45.06 ? C15 XOV 401 B 1 HETATM 9 C C17 XOV . . . D 2 -21.011 12.124 -8.524 1 51.34 ? C17 XOV 401 B 1 HETATM 10 C C1 XOV . . . D 2 -17.594 10.247 -7.136 1 70.62 ? C1 XOV 401 B 1 HETATM 11 C C2 XOV . . . D 2 -16.397 9.58 -6.815 1 73.11 ? C2 XOV 401 B 1 HETATM 12 C C3 XOV . . . D 2 -15.205 10.947 -8.465 1 72.72 ? C3 XOV 401 B 1 HETATM 13 C C9 XOV . . . D 2 -22.304 11.679 -7.845 1 49.02 ? C9 XOV 401 B 1 HETATM 14 C C11 XOV . . . D 2 -26.592 12.285 -9.306 1 47.79 ? C11 XOV 401 B 1 HETATM 15 C C12 XOV . . . D 2 -27.133 11.316 -11.128 1 45.73 ? C12 XOV 401 B 1 HETATM 16 C C14 XOV . . . D 2 -22.254 12.29 -10.766 1 50.35 ? C14 XOV 401 B 1 HETATM 17 C C16 XOV . . . D 2 -25.89 11.208 -10.176 1 48.11 ? C16 XOV 401 B 1 HETATM 18 C C18 XOV . . . D 2 -27.922 11.743 -9.865 1 46.67 ? C18 XOV 401 B 1 HETATM 19 C C19 XOV . . . D 2 -19.874 11.358 -7.887 1 54.95 ? C19 XOV 401 B 1 HETATM 20 N N20 XOV . . . D 2 -29.003 12.713 -10.037 1 44.77 ? N20 XOV 401 B 1 HETATM 21 N N21 XOV . . . D 2 -23.511 11.934 -10.071 1 49.89 ? N21 XOV 401 B 1 HETATM 22 O O22 XOV . . . D 2 -31.326 12.452 -10.297 1 48.54 ? O22 XOV 401 B 1 HETATM 23 O O23 XOV . . . D 2 -24.372 11.395 -12.03 1 45.42 ? O23 XOV 401 B 1 HETATM 24 O O24 XOV . . . D 2 -30.018 10.75 -9.513 1 46.36 ? O24 XOV 401 B 1 HETATM 25 O O25 XOV . . . D 2 -18.713 11.922 -8.482 1 58.83 ? O25 XOV 401 B 1 HETATM 26 F F26 XOV . . . D 2 -14.069 9.319 -7.182 1 79.45 ? F26 XOV 401 B 1 HETATM 27 CL CL27 XOV . . . D 2 -16.41 12.826 -9.989 1 67.3 ? CL27 XOV 401 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #