data_7L4X
#
_model_server_result.job_id            8rzcdnepZO8VHurXHh1NRA 
_model_server_result.datetime_utc      '2025-09-30 18:14:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l4x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":603}' 
#
_entry.id    7L4X 
#
_exptl.entry_id    7L4X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7L4X 
_cell.length_a            56.744 
_cell.length_b            56.744 
_cell.length_c            108.956 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L4X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
B,G 1 2 
B,G 1 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 36.318667 
3 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 72.637333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O3' DG 6 E DG 6 1_555 B P 6MA 7 E 6MA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? 
covale ? covale2 B O3' 6MA 7 E 6MA 7 1_555 B P DG 8 E DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? 
hydrog WATSON-CRICK hydrog1 B N3 DC 1 E DC 1 1_555 B N1 DG 6 E DG 6 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N4 DC 1 E DC 1 1_555 B O6 DG 6 E DG 6 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B O2 DC 1 E DC 1 1_555 B N2 DG 6 E DG 6 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N1 DA 2 E DA 2 1_555 B N3 DT 5 E DT 5 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B N6 DA 2 E DA 2 1_555 B O4 DT 5 E DT 5 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B N1 DG 3 E DG 3 1_555 B N3 DC 4 E DC 4 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B N2 DG 3 E DG 3 1_555 B O2 DC 4 E DC 4 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B O6 DG 3 E DG 3 1_555 B N4 DC 4 E DC 4 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B N3 DC 4 E DC 4 1_555 B N1 DG 3 E DG 3 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N4 DC 4 E DC 4 1_555 B O6 DG 3 E DG 3 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B O2 DC 4 E DC 4 1_555 B N2 DG 3 E DG 3 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B N3 DT 5 E DT 5 1_555 B N1 DA 2 E DA 2 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B O4 DT 5 E DT 5 1_555 B N6 DA 2 E DA 2 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B N1 DG 6 E DG 6 1_555 B N3 DC 1 E DC 1 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B N2 DG 6 E DG 6 1_555 B O2 DC 1 E DC 1 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 B O6 DG 6 E DG 6 1_555 B N4 DC 1 E DC 1 6_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 B N1 DG 8 E DG 8 1_555 B N3 DC 13 E DC 13 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 B N2 DG 8 E DG 8 1_555 B O2 DC 13 E DC 13 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 B O6 DG 8 E DG 8 1_555 B N4 DC 13 E DC 13 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 B N3 DT 9 E DT 9 1_555 B N1 DA 12 E DA 12 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 B O4 DT 9 E DT 9 1_555 B N6 DA 12 E DA 12 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 B N3 DC 10 E DC 10 1_555 B N1 DG 11 E DG 11 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 B N4 DC 10 E DC 10 1_555 B O6 DG 11 E DG 11 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 B O2 DC 10 E DC 10 1_555 B N2 DG 11 E DG 11 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 B N1 DG 11 E DG 11 1_555 B N3 DC 10 E DC 10 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 B N2 DG 11 E DG 11 1_555 B O2 DC 10 E DC 10 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 B O6 DG 11 E DG 11 1_555 B N4 DC 10 E DC 10 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 B N1 DA 12 E DA 12 1_555 B N3 DT 9 E DT 9 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 B N6 DA 12 E DA 12 1_555 B O4 DT 9 E DT 9 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 B N3 DC 13 E DC 13 1_555 B N1 DG 8 E DG 8 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 B N4 DC 13 E DC 13 1_555 B O6 DG 8 E DG 8 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 B O2 DC 13 E DC 13 1_555 B N2 DG 8 E DG 8 5_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 273 n n 
C1 C2 EDO sing 274 n n 
C1 H11 EDO sing 275 n n 
C1 H12 EDO sing 276 n n 
O1 HO1 EDO sing 277 n n 
C2 O2 EDO sing 278 n n 
C2 H21 EDO sing 279 n n 
C2 H22 EDO sing 280 n n 
O2 HO2 EDO sing 281 n n 
#
_atom_sites.entry_id                     7L4X 
_atom_sites.fract_transf_matrix[1][1]    0.017623 
_atom_sites.fract_transf_matrix[1][2]    0.010175 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020349 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009178 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO B 1 601 601 EDO EDO . 
D 3 EDO B 1 602 701 EDO EDO . 
E 3 EDO B 1 603 801 EDO EDO . 
F 4 HOH B 1 701 112 HOH HOH . 
F 4 HOH B 2 702 87 HOH HOH . 
F 4 HOH B 3 703 80 HOH HOH . 
F 4 HOH B 4 704 75 HOH HOH . 
F 4 HOH B 5 705 62 HOH HOH . 
F 4 HOH B 6 706 97 HOH HOH . 
F 4 HOH B 7 707 84 HOH HOH . 
F 4 HOH B 8 708 105 HOH HOH . 
F 4 HOH B 9 709 36 HOH HOH . 
F 4 HOH B 10 710 33 HOH HOH . 
F 4 HOH B 11 711 86 HOH HOH . 
F 4 HOH B 12 712 9 HOH HOH . 
F 4 HOH B 13 713 46 HOH HOH . 
F 4 HOH B 14 714 95 HOH HOH . 
F 4 HOH B 15 715 14 HOH HOH . 
F 4 HOH B 16 716 17 HOH HOH . 
F 4 HOH B 17 717 20 HOH HOH . 
F 4 HOH B 18 718 34 HOH HOH . 
F 4 HOH B 19 719 89 HOH HOH . 
F 4 HOH B 20 720 37 HOH HOH . 
F 4 HOH B 21 721 15 HOH HOH . 
F 4 HOH B 22 722 53 HOH HOH . 
F 4 HOH B 23 723 6 HOH HOH . 
F 4 HOH B 24 724 57 HOH HOH . 
F 4 HOH B 25 725 2 HOH HOH . 
F 4 HOH B 26 726 1 HOH HOH . 
F 4 HOH B 27 727 58 HOH HOH . 
F 4 HOH B 28 728 77 HOH HOH . 
F 4 HOH B 29 729 27 HOH HOH . 
F 4 HOH B 30 730 23 HOH HOH . 
F 4 HOH B 31 731 91 HOH HOH . 
F 4 HOH B 32 732 5 HOH HOH . 
F 4 HOH B 33 733 52 HOH HOH . 
F 4 HOH B 34 734 3 HOH HOH . 
F 4 HOH B 35 735 107 HOH HOH . 
F 4 HOH B 36 736 30 HOH HOH . 
F 4 HOH B 37 737 8 HOH HOH . 
F 4 HOH B 38 738 4 HOH HOH . 
F 4 HOH B 39 739 76 HOH HOH . 
F 4 HOH B 40 740 102 HOH HOH . 
F 4 HOH B 41 741 19 HOH HOH . 
F 4 HOH B 42 742 25 HOH HOH . 
F 4 HOH B 43 743 93 HOH HOH . 
F 4 HOH B 44 744 7 HOH HOH . 
F 4 HOH B 45 745 88 HOH HOH . 
F 4 HOH B 46 746 108 HOH HOH . 
F 4 HOH B 47 747 13 HOH HOH . 
F 4 HOH B 48 748 31 HOH HOH . 
F 4 HOH B 49 749 42 HOH HOH . 
F 4 HOH B 50 750 39 HOH HOH . 
F 4 HOH B 51 751 11 HOH HOH . 
F 4 HOH B 52 752 55 HOH HOH . 
F 4 HOH B 53 753 85 HOH HOH . 
F 4 HOH B 54 754 65 HOH HOH . 
F 4 HOH B 55 755 56 HOH HOH . 
F 4 HOH B 56 756 66 HOH HOH . 
F 4 HOH B 57 757 106 HOH HOH . 
F 4 HOH B 58 758 82 HOH HOH . 
F 4 HOH B 59 759 22 HOH HOH . 
F 4 HOH B 60 760 49 HOH HOH . 
F 4 HOH B 61 761 44 HOH HOH . 
F 4 HOH B 62 762 35 HOH HOH . 
F 4 HOH B 63 763 83 HOH HOH . 
F 4 HOH B 64 764 38 HOH HOH . 
F 4 HOH B 65 765 43 HOH HOH . 
F 4 HOH B 66 766 48 HOH HOH . 
F 4 HOH B 67 767 109 HOH HOH . 
F 4 HOH B 68 768 16 HOH HOH . 
F 4 HOH B 69 769 69 HOH HOH . 
F 4 HOH B 70 770 101 HOH HOH . 
F 4 HOH B 71 771 29 HOH HOH . 
F 4 HOH B 72 772 98 HOH HOH . 
F 4 HOH B 73 773 103 HOH HOH . 
F 4 HOH B 74 774 45 HOH HOH . 
F 4 HOH B 75 775 78 HOH HOH . 
F 4 HOH B 76 776 96 HOH HOH . 
F 4 HOH B 77 777 12 HOH HOH . 
F 4 HOH B 78 778 92 HOH HOH . 
G 4 HOH E 1 101 63 HOH HOH . 
G 4 HOH E 2 102 51 HOH HOH . 
G 4 HOH E 3 103 70 HOH HOH . 
G 4 HOH E 4 104 59 HOH HOH . 
G 4 HOH E 5 105 67 HOH HOH . 
G 4 HOH E 6 106 114 HOH HOH . 
G 4 HOH E 7 107 18 HOH HOH . 
G 4 HOH E 8 108 28 HOH HOH . 
G 4 HOH E 9 109 99 HOH HOH . 
G 4 HOH E 10 110 94 HOH HOH . 
G 4 HOH E 11 111 71 HOH HOH . 
G 4 HOH E 12 112 60 HOH HOH . 
G 4 HOH E 13 113 100 HOH HOH . 
G 4 HOH E 14 114 111 HOH HOH . 
G 4 HOH E 15 115 10 HOH HOH . 
G 4 HOH E 16 116 74 HOH HOH . 
G 4 HOH E 17 117 64 HOH HOH . 
G 4 HOH E 18 118 110 HOH HOH . 
G 4 HOH E 19 119 50 HOH HOH . 
G 4 HOH E 20 120 79 HOH HOH . 
G 4 HOH E 21 121 90 HOH HOH . 
G 4 HOH E 22 122 72 HOH HOH . 
G 4 HOH E 23 123 113 HOH HOH . 
G 4 HOH E 24 124 104 HOH HOH . 
G 4 HOH E 25 125 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 -0.247 -11.998 16.264 1 57.62 ? C1 EDO 603 B 1 
HETATM 2 O O1 EDO . . . E 3 -0.46 -12.95 15.211 1 57.48 ? O1 EDO 603 B 1 
HETATM 3 C C2 EDO . . . E 3 -1.516 -11.884 17.105 1 61.96 ? C2 EDO 603 B 1 
HETATM 4 O O2 EDO . . . E 3 -2.555 -11.292 16.312 1 66.92 ? O2 EDO 603 B 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           378 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#