data_7L4Y
#
_model_server_result.job_id            XE6HVZpaN3tBgjYu6JrLOQ 
_model_server_result.datetime_utc      '2024-11-07 20:51:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l4y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    7L4Y 
#
_exptl.entry_id    7L4Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7L4Y 
_cell.length_a            45.968 
_cell.length_b            66.383 
_cell.length_c            77.605 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L4Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,E 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 45.968 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' DG 6 F DG 6 1_555 A P 6MA 7 F 6MA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? 
covale ? covale2 A O3' 6MA 7 F 6MA 7 1_555 A P DG 8 F DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? 
covale ? covale3 C O3' DG 6 E DG 6 1_555 C P 6MA 7 E 6MA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? 
covale ? covale4 C O3' 6MA 7 E 6MA 7 1_555 C P DG 8 E DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? 
hydrog WATSON-CRICK hydrog1 A N3 DC 1 F DC 1 1_555 C N1 DG 6 E DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 F DC 1 1_555 C O6 DG 6 E DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 F DC 1 1_555 C N2 DG 6 E DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 DA 2 F DA 2 1_555 C N3 DT 5 E DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N6 DA 2 F DA 2 1_555 C O4 DT 5 E DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N1 DG 3 F DG 3 1_555 C N3 DC 4 E DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N2 DG 3 F DG 3 1_555 C O2 DC 4 E DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O6 DG 3 F DG 3 1_555 C N4 DC 4 E DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N3 DC 4 F DC 4 1_555 C N1 DG 3 E DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N4 DC 4 F DC 4 1_555 C O6 DG 3 E DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A O2 DC 4 F DC 4 1_555 C N2 DG 3 E DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N3 DT 5 F DT 5 1_555 C N1 DA 2 E DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A O4 DT 5 F DT 5 1_555 C N6 DA 2 E DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N1 DG 6 F DG 6 1_555 C N3 DC 1 E DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N2 DG 6 F DG 6 1_555 C O2 DC 1 E DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A O6 DG 6 F DG 6 1_555 C N4 DC 1 E DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 273 n n 
C1 C2 EDO sing 274 n n 
C1 H11 EDO sing 275 n n 
C1 H12 EDO sing 276 n n 
O1 HO1 EDO sing 277 n n 
C2 O2 EDO sing 278 n n 
C2 H21 EDO sing 279 n n 
C2 H22 EDO sing 280 n n 
O2 HO2 EDO sing 281 n n 
#
_atom_sites.entry_id                     7L4Y 
_atom_sites.fract_transf_matrix[1][1]    0.021754 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015064 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012886 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 EDO B 1 601 601 EDO EDO . 
E 4 HOH F 1 101 88 HOH HOH . 
E 4 HOH F 2 102 18 HOH HOH . 
E 4 HOH F 3 103 16 HOH HOH . 
E 4 HOH F 4 104 62 HOH HOH . 
E 4 HOH F 5 105 58 HOH HOH . 
F 4 HOH B 1 701 77 HOH HOH . 
F 4 HOH B 2 702 81 HOH HOH . 
F 4 HOH B 3 703 47 HOH HOH . 
F 4 HOH B 4 704 69 HOH HOH . 
F 4 HOH B 5 705 78 HOH HOH . 
F 4 HOH B 6 706 48 HOH HOH . 
F 4 HOH B 7 707 13 HOH HOH . 
F 4 HOH B 8 708 4 HOH HOH . 
F 4 HOH B 9 709 85 HOH HOH . 
F 4 HOH B 10 710 79 HOH HOH . 
F 4 HOH B 11 711 1 HOH HOH . 
F 4 HOH B 12 712 87 HOH HOH . 
F 4 HOH B 13 713 84 HOH HOH . 
F 4 HOH B 14 714 40 HOH HOH . 
F 4 HOH B 15 715 30 HOH HOH . 
F 4 HOH B 16 716 36 HOH HOH . 
F 4 HOH B 17 717 25 HOH HOH . 
F 4 HOH B 18 718 7 HOH HOH . 
F 4 HOH B 19 719 76 HOH HOH . 
F 4 HOH B 20 720 12 HOH HOH . 
F 4 HOH B 21 721 49 HOH HOH . 
F 4 HOH B 22 722 54 HOH HOH . 
F 4 HOH B 23 723 46 HOH HOH . 
F 4 HOH B 24 724 19 HOH HOH . 
F 4 HOH B 25 725 28 HOH HOH . 
F 4 HOH B 26 726 27 HOH HOH . 
F 4 HOH B 27 727 6 HOH HOH . 
F 4 HOH B 28 728 65 HOH HOH . 
F 4 HOH B 29 729 72 HOH HOH . 
F 4 HOH B 30 730 9 HOH HOH . 
F 4 HOH B 31 731 22 HOH HOH . 
F 4 HOH B 32 732 5 HOH HOH . 
F 4 HOH B 33 733 3 HOH HOH . 
F 4 HOH B 34 734 55 HOH HOH . 
F 4 HOH B 35 735 10 HOH HOH . 
F 4 HOH B 36 736 41 HOH HOH . 
F 4 HOH B 37 737 42 HOH HOH . 
F 4 HOH B 38 738 35 HOH HOH . 
F 4 HOH B 39 739 23 HOH HOH . 
F 4 HOH B 40 740 90 HOH HOH . 
F 4 HOH B 41 741 60 HOH HOH . 
F 4 HOH B 42 742 2 HOH HOH . 
F 4 HOH B 43 743 59 HOH HOH . 
F 4 HOH B 44 744 92 HOH HOH . 
F 4 HOH B 45 745 26 HOH HOH . 
F 4 HOH B 46 746 61 HOH HOH . 
F 4 HOH B 47 747 86 HOH HOH . 
F 4 HOH B 48 748 64 HOH HOH . 
F 4 HOH B 49 749 83 HOH HOH . 
F 4 HOH B 50 750 15 HOH HOH . 
F 4 HOH B 51 751 50 HOH HOH . 
F 4 HOH B 52 752 91 HOH HOH . 
F 4 HOH B 53 753 70 HOH HOH . 
F 4 HOH B 54 754 82 HOH HOH . 
F 4 HOH B 55 755 63 HOH HOH . 
F 4 HOH B 56 756 68 HOH HOH . 
F 4 HOH B 57 757 66 HOH HOH . 
F 4 HOH B 58 758 94 HOH HOH . 
G 4 HOH E 1 101 32 HOH HOH . 
G 4 HOH E 2 102 71 HOH HOH . 
G 4 HOH E 3 103 38 HOH HOH . 
G 4 HOH E 4 104 33 HOH HOH . 
G 4 HOH E 5 105 29 HOH HOH . 
G 4 HOH E 6 106 31 HOH HOH . 
G 4 HOH E 7 107 73 HOH HOH . 
G 4 HOH E 8 108 67 HOH HOH . 
G 4 HOH E 9 109 17 HOH HOH . 
G 4 HOH E 10 110 74 HOH HOH . 
G 4 HOH E 11 111 21 HOH HOH . 
G 4 HOH E 12 112 20 HOH HOH . 
G 4 HOH E 13 113 14 HOH HOH . 
G 4 HOH E 14 114 80 HOH HOH . 
G 4 HOH E 15 115 89 HOH HOH . 
G 4 HOH E 16 116 11 HOH HOH . 
G 4 HOH E 17 117 45 HOH HOH . 
G 4 HOH E 18 118 37 HOH HOH . 
G 4 HOH E 19 119 8 HOH HOH . 
G 4 HOH E 20 120 75 HOH HOH . 
G 4 HOH E 21 121 57 HOH HOH . 
G 4 HOH E 22 122 24 HOH HOH . 
G 4 HOH E 23 123 51 HOH HOH . 
G 4 HOH E 24 124 39 HOH HOH . 
G 4 HOH E 25 125 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 15.979 -1.691 7.427 1 39.88 ? C1 EDO 601 B 1 
HETATM 2 O O1 EDO . . . D 3 16.274 -1.518 6.037 1 39.89 ? O1 EDO 601 B 1 
HETATM 3 C C2 EDO . . . D 3 15.747 -0.327 8.064 1 37.81 ? C2 EDO 601 B 1 
HETATM 4 O O2 EDO . . . D 3 16.871 0.517 7.788 1 43.37 ? O2 EDO 601 B 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#