data_7L4Y # _model_server_result.job_id 4FNlOtfsvJSemoX5iIyBMA _model_server_result.datetime_utc '2024-11-22 12:07:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 7L4Y # _exptl.entry_id 7L4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L4Y _cell.length_a 45.968 _cell.length_b 66.383 _cell.length_c 77.605 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 45.968 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DG 6 F DG 6 1_555 A P 6MA 7 F 6MA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale2 A O3' 6MA 7 F 6MA 7 1_555 A P DG 8 F DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale3 C O3' DG 6 E DG 6 1_555 C P 6MA 7 E 6MA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale4 C O3' 6MA 7 E 6MA 7 1_555 C P DG 8 E DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 F DC 1 1_555 C N1 DG 6 E DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 F DC 1 1_555 C O6 DG 6 E DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 F DC 1 1_555 C N2 DG 6 E DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 2 F DA 2 1_555 C N3 DT 5 E DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 2 F DA 2 1_555 C O4 DT 5 E DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 3 F DG 3 1_555 C N3 DC 4 E DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 3 F DG 3 1_555 C O2 DC 4 E DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 3 F DG 3 1_555 C N4 DC 4 E DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DC 4 F DC 4 1_555 C N1 DG 3 E DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 DC 4 F DC 4 1_555 C O6 DG 3 E DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 DC 4 F DC 4 1_555 C N2 DG 3 E DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DT 5 F DT 5 1_555 C N1 DA 2 E DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O4 DT 5 F DT 5 1_555 C N6 DA 2 E DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DG 6 F DG 6 1_555 C N3 DC 1 E DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N2 DG 6 F DG 6 1_555 C O2 DC 1 E DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O6 DG 6 F DG 6 1_555 C N4 DC 1 E DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 273 n n C1 C2 EDO sing 274 n n C1 H11 EDO sing 275 n n C1 H12 EDO sing 276 n n O1 HO1 EDO sing 277 n n C2 O2 EDO sing 278 n n C2 H21 EDO sing 279 n n C2 H22 EDO sing 280 n n O2 HO2 EDO sing 281 n n # _atom_sites.entry_id 7L4Y _atom_sites.fract_transf_matrix[1][1] 0.021754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 EDO B 1 601 601 EDO EDO . E 4 HOH F 1 101 88 HOH HOH . E 4 HOH F 2 102 18 HOH HOH . E 4 HOH F 3 103 16 HOH HOH . E 4 HOH F 4 104 62 HOH HOH . E 4 HOH F 5 105 58 HOH HOH . F 4 HOH B 1 701 77 HOH HOH . F 4 HOH B 2 702 81 HOH HOH . F 4 HOH B 3 703 47 HOH HOH . F 4 HOH B 4 704 69 HOH HOH . F 4 HOH B 5 705 78 HOH HOH . F 4 HOH B 6 706 48 HOH HOH . F 4 HOH B 7 707 13 HOH HOH . F 4 HOH B 8 708 4 HOH HOH . F 4 HOH B 9 709 85 HOH HOH . F 4 HOH B 10 710 79 HOH HOH . F 4 HOH B 11 711 1 HOH HOH . F 4 HOH B 12 712 87 HOH HOH . F 4 HOH B 13 713 84 HOH HOH . F 4 HOH B 14 714 40 HOH HOH . F 4 HOH B 15 715 30 HOH HOH . F 4 HOH B 16 716 36 HOH HOH . F 4 HOH B 17 717 25 HOH HOH . F 4 HOH B 18 718 7 HOH HOH . F 4 HOH B 19 719 76 HOH HOH . F 4 HOH B 20 720 12 HOH HOH . F 4 HOH B 21 721 49 HOH HOH . F 4 HOH B 22 722 54 HOH HOH . F 4 HOH B 23 723 46 HOH HOH . F 4 HOH B 24 724 19 HOH HOH . F 4 HOH B 25 725 28 HOH HOH . F 4 HOH B 26 726 27 HOH HOH . F 4 HOH B 27 727 6 HOH HOH . F 4 HOH B 28 728 65 HOH HOH . F 4 HOH B 29 729 72 HOH HOH . F 4 HOH B 30 730 9 HOH HOH . F 4 HOH B 31 731 22 HOH HOH . F 4 HOH B 32 732 5 HOH HOH . F 4 HOH B 33 733 3 HOH HOH . F 4 HOH B 34 734 55 HOH HOH . F 4 HOH B 35 735 10 HOH HOH . F 4 HOH B 36 736 41 HOH HOH . F 4 HOH B 37 737 42 HOH HOH . F 4 HOH B 38 738 35 HOH HOH . F 4 HOH B 39 739 23 HOH HOH . F 4 HOH B 40 740 90 HOH HOH . F 4 HOH B 41 741 60 HOH HOH . F 4 HOH B 42 742 2 HOH HOH . F 4 HOH B 43 743 59 HOH HOH . F 4 HOH B 44 744 92 HOH HOH . F 4 HOH B 45 745 26 HOH HOH . F 4 HOH B 46 746 61 HOH HOH . F 4 HOH B 47 747 86 HOH HOH . F 4 HOH B 48 748 64 HOH HOH . F 4 HOH B 49 749 83 HOH HOH . F 4 HOH B 50 750 15 HOH HOH . F 4 HOH B 51 751 50 HOH HOH . F 4 HOH B 52 752 91 HOH HOH . F 4 HOH B 53 753 70 HOH HOH . F 4 HOH B 54 754 82 HOH HOH . F 4 HOH B 55 755 63 HOH HOH . F 4 HOH B 56 756 68 HOH HOH . F 4 HOH B 57 757 66 HOH HOH . F 4 HOH B 58 758 94 HOH HOH . G 4 HOH E 1 101 32 HOH HOH . G 4 HOH E 2 102 71 HOH HOH . G 4 HOH E 3 103 38 HOH HOH . G 4 HOH E 4 104 33 HOH HOH . G 4 HOH E 5 105 29 HOH HOH . G 4 HOH E 6 106 31 HOH HOH . G 4 HOH E 7 107 73 HOH HOH . G 4 HOH E 8 108 67 HOH HOH . G 4 HOH E 9 109 17 HOH HOH . G 4 HOH E 10 110 74 HOH HOH . G 4 HOH E 11 111 21 HOH HOH . G 4 HOH E 12 112 20 HOH HOH . G 4 HOH E 13 113 14 HOH HOH . G 4 HOH E 14 114 80 HOH HOH . G 4 HOH E 15 115 89 HOH HOH . G 4 HOH E 16 116 11 HOH HOH . G 4 HOH E 17 117 45 HOH HOH . G 4 HOH E 18 118 37 HOH HOH . G 4 HOH E 19 119 8 HOH HOH . G 4 HOH E 20 120 75 HOH HOH . G 4 HOH E 21 121 57 HOH HOH . G 4 HOH E 22 122 24 HOH HOH . G 4 HOH E 23 123 51 HOH HOH . G 4 HOH E 24 124 39 HOH HOH . G 4 HOH E 25 125 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 15.979 -1.691 7.427 1 39.88 ? C1 EDO 601 B 1 HETATM 2 O O1 EDO . . . D 3 16.274 -1.518 6.037 1 39.89 ? O1 EDO 601 B 1 HETATM 3 C C2 EDO . . . D 3 15.747 -0.327 8.064 1 37.81 ? C2 EDO 601 B 1 HETATM 4 O O2 EDO . . . D 3 16.871 0.517 7.788 1 43.37 ? O2 EDO 601 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #