data_7L4Z # _model_server_result.job_id Pl3Of7Z4Oig8LGPpjpGgDw _model_server_result.datetime_utc '2024-11-21 09:17:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":601}' # _entry.id 7L4Z # _exptl.entry_id 7L4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7L4Z _cell.length_a 284.92 _cell.length_b 284.92 _cell.length_c 156.016 _cell.Z_PDB 90 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,K 1 1 B,G,L,M 2 1 C,H,N,O 3 1 D,I,P 4 1 E,J,Q 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 B CYS 336 1_555 A SG CYS 43 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 61 B CYS 379 1_555 A SG CYS 114 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 73 B CYS 391 1_555 A SG CYS 207 B CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 162 B CYS 480 1_555 A SG CYS 170 B CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 18 D CYS 336 1_555 B SG CYS 43 D CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 61 D CYS 379 1_555 B SG CYS 114 D CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 B SG CYS 73 D CYS 391 1_555 B SG CYS 207 D CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 B SG CYS 162 D CYS 480 1_555 B SG CYS 170 D CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 C SG CYS 18 A CYS 336 1_555 C SG CYS 43 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 C SG CYS 61 A CYS 379 1_555 C SG CYS 114 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 C SG CYS 73 A CYS 391 1_555 C SG CYS 207 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 C SG CYS 162 A CYS 480 1_555 C SG CYS 170 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf13 D SG CYS 18 C CYS 336 1_555 D SG CYS 43 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf14 D SG CYS 61 C CYS 379 1_555 D SG CYS 114 C CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 D SG CYS 73 C CYS 391 1_555 D SG CYS 207 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 D SG CYS 162 C CYS 480 1_555 D SG CYS 170 C CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf17 E SG CYS 18 E CYS 336 1_555 E SG CYS 43 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 E SG CYS 61 E CYS 379 1_555 E SG CYS 114 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf19 E SG CYS 73 E CYS 391 1_555 E SG CYS 207 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf20 E SG CYS 162 E CYS 480 1_555 E SG CYS 170 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 13 B ASN 331 1_555 K C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 B ND2 ASN 13 D ASN 331 1_555 M C1 NAG . D NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 B ND2 ASN 25 D ASN 343 1_555 L C1 NAG . D NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale4 C ND2 ASN 13 A ASN 331 1_555 O C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 C ND2 ASN 25 A ASN 343 1_555 N C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 D ND2 ASN 25 C ASN 343 1_555 P C1 NAG . C NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 E ND2 ASN 25 E ASN 343 1_555 Q C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale8 F C ACE 1 S ACE 0 1_555 F N DTY 2 S DTY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 F CH3 ACE 1 S ACE 0 1_555 F SG CYS 16 S CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale10 F C DTY 2 S DTY 1 1_555 F N LYS 3 S LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 F C CYS 16 S CYS 15 1_555 F N NH2 17 S NH2 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale12 G C ACE 1 T ACE 0 1_555 G N DTY 2 T DTY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 G CH3 ACE 1 T ACE 0 1_555 G SG CYS 16 T CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale14 G C DTY 2 T DTY 1 1_555 G N LYS 3 T LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 G C CYS 16 T CYS 15 1_555 G N NH2 17 T NH2 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale16 H C ACE 1 R ACE 0 1_555 H N DTY 2 R DTY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale17 H CH3 ACE 1 R ACE 0 1_555 H SG CYS 16 R CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale18 H C DTY 2 R DTY 1 1_555 H N LYS 3 R LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 H C CYS 16 R CYS 15 1_555 H N NH2 17 R NH2 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale20 I C ACE 1 U ACE 0 1_555 I N DTY 2 U DTY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale21 I CH3 ACE 1 U ACE 0 1_555 I SG CYS 16 U CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale22 I C DTY 2 U DTY 1 1_555 I N LYS 3 U LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 I C CYS 16 U CYS 15 1_555 I N NH2 17 U NH2 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale24 J C ACE 1 V ACE 0 1_555 J N DTY 2 V DTY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale25 J CH3 ACE 1 V ACE 0 1_555 J SG CYS 16 V CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale26 J C DTY 2 V DTY 1 1_555 J N LYS 3 V LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale27 J C CYS 16 V CYS 15 1_555 J N NH2 17 V NH2 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7L4Z _atom_sites.fract_transf_matrix[1][1] 0.00351 _atom_sites.fract_transf_matrix[1][2] 0.002026 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 3 NAG B 1 601 601 NAG NAG . L 3 NAG D 1 601 601 NAG NAG . M 3 NAG D 1 602 602 NAG NAG . N 3 NAG A 1 601 601 NAG NAG . O 3 NAG A 1 602 602 NAG NAG . P 3 NAG C 1 601 601 NAG NAG . Q 3 NAG E 1 601 601 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 3 12.813 -102.422 -75.271 1 184.35 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . N 3 13.039 -101.141 -74.451 1 187.2 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . N 3 13.466 -99.982 -75.362 1 199.23 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . N 3 14.588 -100.391 -76.31 1 201.6 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . N 3 14.238 -101.69 -77.025 1 198.34 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . N 3 15.351 -102.209 -77.904 1 205.49 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . N 3 11.815 -100.2 -72.528 1 162.41 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . N 3 10.462 -99.906 -71.957 1 154.02 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . N 3 11.826 -100.789 -73.729 1 175.18 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . N 3 13.89 -98.886 -74.558 1 194.76 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . N 3 14.797 -99.373 -77.283 1 183.3 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . N 3 13.971 -102.705 -76.051 1 185.64 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . N 3 15.14 -103.572 -78.25 1 211.38 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . N 3 12.848 -99.918 -71.931 1 165.98 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 14 #