data_7L5C
#
_model_server_result.job_id            hX87FTvNb7QSJDkyvWQFVw 
_model_server_result.datetime_utc      '2025-04-12 00:18:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l5c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":302}' 
#
_entry.id    7L5C 
#
_exptl.entry_id    7L5C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7L5C 
_cell.length_a            140.63 
_cell.length_b            87.16 
_cell.length_c            98.59 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L5C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,Z 1 1 
B,H,I,J,K,AA 2 1 
C,L,M,N,O,P,Q,R,S,T,BA 3 1 
D,U,V,W,X,Y,CA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 I N N 
? 2 J N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 241 A CYS 244 1_555 G CU CU1 . A CU1 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc2 B NE2 HIS 78 B HIS 81 1_555 K CU CU1 . B CU1 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc3 B SG CYS 241 B CYS 244 1_555 K CU CU1 . B CU1 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7L5C 
_atom_sites.fract_transf_matrix[1][1]    0.007111 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011473 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010143 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 EDO A 1 301 301 EDO EDO . 
F 2 EDO A 1 302 401 EDO EDO . 
G 3 CU1 A 1 303 2 CU1 CU1 . 
H 4 GOL B 1 301 301 GOL GOL . 
I 2 EDO B 1 302 401 EDO EDO . 
J 2 EDO B 1 303 501 EDO EDO . 
K 3 CU1 B 1 304 3 CU1 CU1 . 
L 2 EDO C 1 301 301 EDO EDO . 
M 2 EDO C 1 302 401 EDO EDO . 
N 2 EDO C 1 303 501 EDO EDO . 
O 2 EDO C 1 304 601 EDO EDO . 
P 2 EDO C 1 305 701 EDO EDO . 
Q 2 EDO C 1 306 801 EDO EDO . 
R 2 EDO C 1 307 901 EDO EDO . 
S 2 EDO C 1 308 1001 EDO EDO . 
T 3 CU1 C 1 309 1 CU1 CU1 . 
U 2 EDO D 1 301 301 EDO EDO . 
V 2 EDO D 1 302 401 EDO EDO . 
W 2 EDO D 1 303 501 EDO EDO . 
X 2 EDO D 1 304 601 EDO EDO . 
Y 3 CU1 D 1 305 4 CU1 CU1 . 
Z 5 HOH A 1 401 12 HOH HOH . 
Z 5 HOH A 2 402 2 HOH HOH . 
Z 5 HOH A 3 403 8 HOH HOH . 
Z 5 HOH A 4 404 82 HOH HOH . 
Z 5 HOH A 5 405 142 HOH HOH . 
Z 5 HOH A 6 406 115 HOH HOH . 
Z 5 HOH A 7 407 33 HOH HOH . 
Z 5 HOH A 8 408 17 HOH HOH . 
Z 5 HOH A 9 409 49 HOH HOH . 
Z 5 HOH A 10 410 59 HOH HOH . 
Z 5 HOH A 11 411 113 HOH HOH . 
Z 5 HOH A 12 412 56 HOH HOH . 
Z 5 HOH A 13 413 44 HOH HOH . 
Z 5 HOH A 14 414 20 HOH HOH . 
Z 5 HOH A 15 415 24 HOH HOH . 
Z 5 HOH A 16 416 158 HOH HOH . 
Z 5 HOH A 17 417 89 HOH HOH . 
Z 5 HOH A 18 418 112 HOH HOH . 
Z 5 HOH A 19 419 47 HOH HOH . 
Z 5 HOH A 20 420 25 HOH HOH . 
Z 5 HOH A 21 421 128 HOH HOH . 
Z 5 HOH A 22 422 27 HOH HOH . 
Z 5 HOH A 23 423 19 HOH HOH . 
Z 5 HOH A 24 424 165 HOH HOH . 
Z 5 HOH A 25 425 155 HOH HOH . 
Z 5 HOH A 26 426 30 HOH HOH . 
Z 5 HOH A 27 427 61 HOH HOH . 
Z 5 HOH A 28 428 62 HOH HOH . 
Z 5 HOH A 29 429 123 HOH HOH . 
Z 5 HOH A 30 430 67 HOH HOH . 
Z 5 HOH A 31 431 99 HOH HOH . 
Z 5 HOH A 32 432 166 HOH HOH . 
Z 5 HOH A 33 433 70 HOH HOH . 
Z 5 HOH A 34 434 152 HOH HOH . 
Z 5 HOH A 35 435 75 HOH HOH . 
Z 5 HOH A 36 436 51 HOH HOH . 
AA 5 HOH B 1 401 157 HOH HOH . 
AA 5 HOH B 2 402 38 HOH HOH . 
AA 5 HOH B 3 403 147 HOH HOH . 
AA 5 HOH B 4 404 10 HOH HOH . 
AA 5 HOH B 5 405 3 HOH HOH . 
AA 5 HOH B 6 406 60 HOH HOH . 
AA 5 HOH B 7 407 11 HOH HOH . 
AA 5 HOH B 8 408 6 HOH HOH . 
AA 5 HOH B 9 409 55 HOH HOH . 
AA 5 HOH B 10 410 29 HOH HOH . 
AA 5 HOH B 11 411 39 HOH HOH . 
AA 5 HOH B 12 412 102 HOH HOH . 
AA 5 HOH B 13 413 21 HOH HOH . 
AA 5 HOH B 14 414 159 HOH HOH . 
AA 5 HOH B 15 415 151 HOH HOH . 
AA 5 HOH B 16 416 154 HOH HOH . 
AA 5 HOH B 17 417 156 HOH HOH . 
AA 5 HOH B 18 418 101 HOH HOH . 
AA 5 HOH B 19 419 124 HOH HOH . 
AA 5 HOH B 20 420 130 HOH HOH . 
AA 5 HOH B 21 421 14 HOH HOH . 
AA 5 HOH B 22 422 57 HOH HOH . 
AA 5 HOH B 23 423 73 HOH HOH . 
AA 5 HOH B 24 424 15 HOH HOH . 
AA 5 HOH B 25 425 170 HOH HOH . 
AA 5 HOH B 26 426 23 HOH HOH . 
AA 5 HOH B 27 427 133 HOH HOH . 
AA 5 HOH B 28 428 169 HOH HOH . 
AA 5 HOH B 29 429 64 HOH HOH . 
AA 5 HOH B 30 430 48 HOH HOH . 
AA 5 HOH B 31 431 171 HOH HOH . 
BA 5 HOH C 1 401 88 HOH HOH . 
BA 5 HOH C 2 402 54 HOH HOH . 
BA 5 HOH C 3 403 117 HOH HOH . 
BA 5 HOH C 4 404 1 HOH HOH . 
BA 5 HOH C 5 405 13 HOH HOH . 
BA 5 HOH C 6 406 22 HOH HOH . 
BA 5 HOH C 7 407 138 HOH HOH . 
BA 5 HOH C 8 408 40 HOH HOH . 
BA 5 HOH C 9 409 42 HOH HOH . 
BA 5 HOH C 10 410 80 HOH HOH . 
BA 5 HOH C 11 411 41 HOH HOH . 
BA 5 HOH C 12 412 85 HOH HOH . 
BA 5 HOH C 13 413 63 HOH HOH . 
BA 5 HOH C 14 414 31 HOH HOH . 
BA 5 HOH C 15 415 7 HOH HOH . 
BA 5 HOH C 16 416 162 HOH HOH . 
BA 5 HOH C 17 417 37 HOH HOH . 
BA 5 HOH C 18 418 35 HOH HOH . 
BA 5 HOH C 19 419 34 HOH HOH . 
BA 5 HOH C 20 420 167 HOH HOH . 
BA 5 HOH C 21 421 74 HOH HOH . 
BA 5 HOH C 22 422 126 HOH HOH . 
BA 5 HOH C 23 423 28 HOH HOH . 
BA 5 HOH C 24 424 36 HOH HOH . 
BA 5 HOH C 25 425 84 HOH HOH . 
BA 5 HOH C 26 426 86 HOH HOH . 
BA 5 HOH C 27 427 139 HOH HOH . 
BA 5 HOH C 28 428 163 HOH HOH . 
BA 5 HOH C 29 429 105 HOH HOH . 
BA 5 HOH C 30 430 160 HOH HOH . 
BA 5 HOH C 31 431 161 HOH HOH . 
BA 5 HOH C 32 432 83 HOH HOH . 
CA 5 HOH D 1 401 18 HOH HOH . 
CA 5 HOH D 2 402 98 HOH HOH . 
CA 5 HOH D 3 403 58 HOH HOH . 
CA 5 HOH D 4 404 71 HOH HOH . 
CA 5 HOH D 5 405 146 HOH HOH . 
CA 5 HOH D 6 406 9 HOH HOH . 
CA 5 HOH D 7 407 66 HOH HOH . 
CA 5 HOH D 8 408 79 HOH HOH . 
CA 5 HOH D 9 409 118 HOH HOH . 
CA 5 HOH D 10 410 26 HOH HOH . 
CA 5 HOH D 11 411 5 HOH HOH . 
CA 5 HOH D 12 412 46 HOH HOH . 
CA 5 HOH D 13 413 92 HOH HOH . 
CA 5 HOH D 14 414 137 HOH HOH . 
CA 5 HOH D 15 415 32 HOH HOH . 
CA 5 HOH D 16 416 95 HOH HOH . 
CA 5 HOH D 17 417 134 HOH HOH . 
CA 5 HOH D 18 418 168 HOH HOH . 
CA 5 HOH D 19 419 129 HOH HOH . 
CA 5 HOH D 20 420 116 HOH HOH . 
CA 5 HOH D 21 421 122 HOH HOH . 
CA 5 HOH D 22 422 69 HOH HOH . 
CA 5 HOH D 23 423 145 HOH HOH . 
CA 5 HOH D 24 424 150 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . V 2 56.033 28.62 51.103 1 45.68 ? C1 EDO 302 D 1 
HETATM 2 O O1 EDO . . . V 2 54.712 28.065 51.07 1 47.65 ? O1 EDO 302 D 1 
HETATM 3 C C2 EDO . . . V 2 56.271 29.467 49.857 1 50.98 ? C2 EDO 302 D 1 
HETATM 4 O O2 EDO . . . V 2 55.317 30.535 49.778 1 55.82 ? O2 EDO 302 D 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#