data_7L5D # _model_server_result.job_id 0jWeo-2qbNr6CLq2p9IQlw _model_server_result.datetime_utc '2025-04-16 18:40:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7L5D # _exptl.entry_id 7L5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 484.616 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-methyl-3-{[4-(pyridin-3-yl)-1,3-thiazol-2-yl]amino}phenyl)-4-[(piperazin-1-yl)methyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.414 _cell.angle_gamma 90 _cell.entry_id 7L5D _cell.length_a 97.436 _cell.length_b 81.296 _cell.length_c 51.558 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H28 N6 O S' _chem_comp.formula_weight 484.616 _chem_comp.id XNJ _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-methyl-3-{[4-(pyridin-3-yl)-1,3-thiazol-2-yl]amino}phenyl)-4-[(piperazin-1-yl)methyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'demethylated masitinib' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CAB XNJ doub 398 n y CAC NAD XNJ sing 399 n y CAB CAA XNJ sing 400 n y NAD CAE XNJ doub 401 n y CAA CAF XNJ doub 402 n y CAE CAF XNJ sing 403 n y CAF CAG XNJ sing 404 n n CAG CAH XNJ doub 405 n y CAG NAK XNJ sing 406 n y CAH SAI XNJ sing 407 n y NAK CAJ XNJ doub 408 n y CAJ SAI XNJ sing 409 n y CAJ NAL XNJ sing 410 n n NBG CBH XNJ sing 411 n n NBG CBF XNJ sing 412 n n NAL CAM XNJ sing 413 n n CBH CBI XNJ sing 414 n n CBF CBE XNJ sing 415 n n CAM CAN XNJ doub 416 n y CAM CAR XNJ sing 417 n y CBI NBD XNJ sing 418 n n CAN CAO XNJ sing 419 n y CBE NBD XNJ sing 420 n n CAS CAR XNJ sing 421 n n NBD CBC XNJ sing 422 n n CAR CAQ XNJ doub 423 n y CAO NAT XNJ sing 424 n n CAO CAP XNJ doub 425 n y NAT CAU XNJ sing 426 n n CBB CBA XNJ doub 427 n y CBB CAV XNJ sing 428 n y CBA CAZ XNJ sing 429 n y CAU CAV XNJ sing 430 n n CAU OAW XNJ doub 431 n n CAV CAX XNJ doub 432 n y CAZ CBC XNJ sing 433 n n CAZ CAY XNJ doub 434 n y CAQ CAP XNJ sing 435 n y CAX CAY XNJ sing 436 n y CBE H1 XNJ sing 437 n n CBE H2 XNJ sing 438 n n CBF H3 XNJ sing 439 n n CBF H4 XNJ sing 440 n n NBG H5 XNJ sing 441 n n CBH H7 XNJ sing 442 n n CBH H8 XNJ sing 443 n n CBI H9 XNJ sing 444 n n CBI H10 XNJ sing 445 n n CBC H12 XNJ sing 446 n n CBC H13 XNJ sing 447 n n CBA H14 XNJ sing 448 n n CBB H15 XNJ sing 449 n n CAY H16 XNJ sing 450 n n CAX H17 XNJ sing 451 n n NAT H18 XNJ sing 452 n n CAN H19 XNJ sing 453 n n CAP H20 XNJ sing 454 n n CAQ H21 XNJ sing 455 n n CAS H22 XNJ sing 456 n n CAS H23 XNJ sing 457 n n CAS H24 XNJ sing 458 n n NAL H25 XNJ sing 459 n n CAH H26 XNJ sing 460 n n CAA H27 XNJ sing 461 n n CAB H28 XNJ sing 462 n n CAC H29 XNJ sing 463 n n CAE H30 XNJ sing 464 n n # _atom_sites.entry_id 7L5D _atom_sites.fract_transf_matrix[1][1] 0.010263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004659 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XNJ A 1 401 401 XNJ G65 . C 3 DMS A 1 402 501 DMS DMS . D 3 DMS A 1 403 502 DMS DMS . E 3 DMS A 1 404 503 DMS DMS . F 3 DMS A 1 405 504 DMS DMS . G 4 GOL A 1 406 401 GOL GOL . H 4 GOL A 1 407 402 GOL GOL . I 4 GOL A 1 408 403 GOL GOL . J 4 GOL A 1 409 404 GOL GOL . K 5 HOH A 1 501 132 HOH HOH . K 5 HOH A 2 502 125 HOH HOH . K 5 HOH A 3 503 163 HOH HOH . K 5 HOH A 4 504 119 HOH HOH . K 5 HOH A 5 505 51 HOH HOH . K 5 HOH A 6 506 55 HOH HOH . K 5 HOH A 7 507 17 HOH HOH . K 5 HOH A 8 508 9 HOH HOH . K 5 HOH A 9 509 174 HOH HOH . K 5 HOH A 10 510 191 HOH HOH . K 5 HOH A 11 511 72 HOH HOH . K 5 HOH A 12 512 135 HOH HOH . K 5 HOH A 13 513 36 HOH HOH . K 5 HOH A 14 514 80 HOH HOH . K 5 HOH A 15 515 6 HOH HOH . K 5 HOH A 16 516 32 HOH HOH . K 5 HOH A 17 517 40 HOH HOH . K 5 HOH A 18 518 91 HOH HOH . K 5 HOH A 19 519 131 HOH HOH . K 5 HOH A 20 520 177 HOH HOH . K 5 HOH A 21 521 127 HOH HOH . K 5 HOH A 22 522 144 HOH HOH . K 5 HOH A 23 523 50 HOH HOH . K 5 HOH A 24 524 159 HOH HOH . K 5 HOH A 25 525 14 HOH HOH . K 5 HOH A 26 526 74 HOH HOH . K 5 HOH A 27 527 169 HOH HOH . K 5 HOH A 28 528 123 HOH HOH . K 5 HOH A 29 529 20 HOH HOH . K 5 HOH A 30 530 18 HOH HOH . K 5 HOH A 31 531 45 HOH HOH . K 5 HOH A 32 532 167 HOH HOH . K 5 HOH A 33 533 30 HOH HOH . K 5 HOH A 34 534 118 HOH HOH . K 5 HOH A 35 535 71 HOH HOH . K 5 HOH A 36 536 12 HOH HOH . K 5 HOH A 37 537 122 HOH HOH . K 5 HOH A 38 538 109 HOH HOH . K 5 HOH A 39 539 128 HOH HOH . K 5 HOH A 40 540 168 HOH HOH . K 5 HOH A 41 541 92 HOH HOH . K 5 HOH A 42 542 98 HOH HOH . K 5 HOH A 43 543 94 HOH HOH . K 5 HOH A 44 544 104 HOH HOH . K 5 HOH A 45 545 31 HOH HOH . K 5 HOH A 46 546 143 HOH HOH . K 5 HOH A 47 547 87 HOH HOH . K 5 HOH A 48 548 142 HOH HOH . K 5 HOH A 49 549 150 HOH HOH . K 5 HOH A 50 550 79 HOH HOH . K 5 HOH A 51 551 88 HOH HOH . K 5 HOH A 52 552 62 HOH HOH . K 5 HOH A 53 553 140 HOH HOH . K 5 HOH A 54 554 157 HOH HOH . K 5 HOH A 55 555 19 HOH HOH . K 5 HOH A 56 556 86 HOH HOH . K 5 HOH A 57 557 56 HOH HOH . K 5 HOH A 58 558 95 HOH HOH . K 5 HOH A 59 559 63 HOH HOH . K 5 HOH A 60 560 38 HOH HOH . K 5 HOH A 61 561 83 HOH HOH . K 5 HOH A 62 562 70 HOH HOH . K 5 HOH A 63 563 66 HOH HOH . K 5 HOH A 64 564 7 HOH HOH . K 5 HOH A 65 565 124 HOH HOH . K 5 HOH A 66 566 153 HOH HOH . K 5 HOH A 67 567 44 HOH HOH . K 5 HOH A 68 568 5 HOH HOH . K 5 HOH A 69 569 76 HOH HOH . K 5 HOH A 70 570 139 HOH HOH . K 5 HOH A 71 571 24 HOH HOH . K 5 HOH A 72 572 77 HOH HOH . K 5 HOH A 73 573 84 HOH HOH . K 5 HOH A 74 574 130 HOH HOH . K 5 HOH A 75 575 101 HOH HOH . K 5 HOH A 76 576 160 HOH HOH . K 5 HOH A 77 577 16 HOH HOH . K 5 HOH A 78 578 173 HOH HOH . K 5 HOH A 79 579 28 HOH HOH . K 5 HOH A 80 580 47 HOH HOH . K 5 HOH A 81 581 137 HOH HOH . K 5 HOH A 82 582 49 HOH HOH . K 5 HOH A 83 583 89 HOH HOH . K 5 HOH A 84 584 117 HOH HOH . K 5 HOH A 85 585 43 HOH HOH . K 5 HOH A 86 586 15 HOH HOH . K 5 HOH A 87 587 93 HOH HOH . K 5 HOH A 88 588 65 HOH HOH . K 5 HOH A 89 589 103 HOH HOH . K 5 HOH A 90 590 176 HOH HOH . K 5 HOH A 91 591 21 HOH HOH . K 5 HOH A 92 592 172 HOH HOH . K 5 HOH A 93 593 120 HOH HOH . K 5 HOH A 94 594 102 HOH HOH . K 5 HOH A 95 595 41 HOH HOH . K 5 HOH A 96 596 81 HOH HOH . K 5 HOH A 97 597 155 HOH HOH . K 5 HOH A 98 598 48 HOH HOH . K 5 HOH A 99 599 35 HOH HOH . K 5 HOH A 100 600 52 HOH HOH . K 5 HOH A 101 601 42 HOH HOH . K 5 HOH A 102 602 25 HOH HOH . K 5 HOH A 103 603 138 HOH HOH . K 5 HOH A 104 604 2 HOH HOH . K 5 HOH A 105 605 115 HOH HOH . K 5 HOH A 106 606 186 HOH HOH . K 5 HOH A 107 607 29 HOH HOH . K 5 HOH A 108 608 57 HOH HOH . K 5 HOH A 109 609 23 HOH HOH . K 5 HOH A 110 610 26 HOH HOH . K 5 HOH A 111 611 107 HOH HOH . K 5 HOH A 112 612 53 HOH HOH . K 5 HOH A 113 613 189 HOH HOH . K 5 HOH A 114 614 37 HOH HOH . K 5 HOH A 115 615 151 HOH HOH . K 5 HOH A 116 616 110 HOH HOH . K 5 HOH A 117 617 175 HOH HOH . K 5 HOH A 118 618 8 HOH HOH . K 5 HOH A 119 619 4 HOH HOH . K 5 HOH A 120 620 165 HOH HOH . K 5 HOH A 121 621 106 HOH HOH . K 5 HOH A 122 622 39 HOH HOH . K 5 HOH A 123 623 187 HOH HOH . K 5 HOH A 124 624 22 HOH HOH . K 5 HOH A 125 625 33 HOH HOH . K 5 HOH A 126 626 183 HOH HOH . K 5 HOH A 127 627 67 HOH HOH . K 5 HOH A 128 628 185 HOH HOH . K 5 HOH A 129 629 182 HOH HOH . K 5 HOH A 130 630 54 HOH HOH . K 5 HOH A 131 631 85 HOH HOH . K 5 HOH A 132 632 11 HOH HOH . K 5 HOH A 133 633 60 HOH HOH . K 5 HOH A 134 634 166 HOH HOH . K 5 HOH A 135 635 13 HOH HOH . K 5 HOH A 136 636 10 HOH HOH . K 5 HOH A 137 637 34 HOH HOH . K 5 HOH A 138 638 59 HOH HOH . K 5 HOH A 139 639 69 HOH HOH . K 5 HOH A 140 640 61 HOH HOH . K 5 HOH A 141 641 96 HOH HOH . K 5 HOH A 142 642 78 HOH HOH . K 5 HOH A 143 643 141 HOH HOH . K 5 HOH A 144 644 164 HOH HOH . K 5 HOH A 145 645 134 HOH HOH . K 5 HOH A 146 646 136 HOH HOH . K 5 HOH A 147 647 75 HOH HOH . K 5 HOH A 148 648 46 HOH HOH . K 5 HOH A 149 649 145 HOH HOH . K 5 HOH A 150 650 27 HOH HOH . K 5 HOH A 151 651 149 HOH HOH . K 5 HOH A 152 652 121 HOH HOH . K 5 HOH A 153 653 111 HOH HOH . K 5 HOH A 154 654 1 HOH HOH . K 5 HOH A 155 655 97 HOH HOH . K 5 HOH A 156 656 100 HOH HOH . K 5 HOH A 157 657 114 HOH HOH . K 5 HOH A 158 658 68 HOH HOH . K 5 HOH A 159 659 82 HOH HOH . K 5 HOH A 160 660 190 HOH HOH . K 5 HOH A 161 661 133 HOH HOH . K 5 HOH A 162 662 148 HOH HOH . K 5 HOH A 163 663 73 HOH HOH . K 5 HOH A 164 664 161 HOH HOH . K 5 HOH A 165 665 184 HOH HOH . K 5 HOH A 166 666 113 HOH HOH . K 5 HOH A 167 667 154 HOH HOH . K 5 HOH A 168 668 3 HOH HOH . K 5 HOH A 169 669 129 HOH HOH . K 5 HOH A 170 670 58 HOH HOH . K 5 HOH A 171 671 179 HOH HOH . K 5 HOH A 172 672 112 HOH HOH . K 5 HOH A 173 673 152 HOH HOH . K 5 HOH A 174 674 146 HOH HOH . K 5 HOH A 175 675 171 HOH HOH . K 5 HOH A 176 676 156 HOH HOH . K 5 HOH A 177 677 180 HOH HOH . K 5 HOH A 178 678 170 HOH HOH . K 5 HOH A 179 679 126 HOH HOH . K 5 HOH A 180 680 90 HOH HOH . K 5 HOH A 181 681 158 HOH HOH . K 5 HOH A 182 682 147 HOH HOH . K 5 HOH A 183 683 162 HOH HOH . K 5 HOH A 184 684 116 HOH HOH . K 5 HOH A 185 685 108 HOH HOH . K 5 HOH A 186 686 178 HOH HOH . K 5 HOH A 187 687 188 HOH HOH . K 5 HOH A 188 688 181 HOH HOH . K 5 HOH A 189 689 99 HOH HOH . K 5 HOH A 190 690 64 HOH HOH . K 5 HOH A 191 691 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBE XNJ . . . B 2 19.206 5.811 24.259 1 87.01 ? CBE XNJ 401 A 1 HETATM 2 C CBF XNJ . . . B 2 19.898 6.132 22.956 1 82.54 ? CBF XNJ 401 A 1 HETATM 3 N NBG XNJ . . . B 2 18.963 6.706 21.997 1 80.42 ? NBG XNJ 401 A 1 HETATM 4 C CBH XNJ . . . B 2 18.378 7.913 22.565 1 71.36 ? CBH XNJ 401 A 1 HETATM 5 C CBI XNJ . . . B 2 17.679 7.615 23.869 1 79.17 ? CBI XNJ 401 A 1 HETATM 6 N NBD XNJ . . . B 2 18.601 7.014 24.835 1 81.95 ? NBD XNJ 401 A 1 HETATM 7 C CBC XNJ . . . B 2 17.958 6.752 26.129 1 76.62 ? CBC XNJ 401 A 1 HETATM 8 C CAZ XNJ . . . B 2 16.708 5.901 26.067 1 80.44 ? CAZ XNJ 401 A 1 HETATM 9 C CBA XNJ . . . B 2 15.453 6.484 25.924 1 71.82 ? CBA XNJ 401 A 1 HETATM 10 C CBB XNJ . . . B 2 14.309 5.708 25.871 1 65 ? CBB XNJ 401 A 1 HETATM 11 C CAY XNJ . . . B 2 16.783 4.518 26.193 1 80.07 ? CAY XNJ 401 A 1 HETATM 12 C CAX XNJ . . . B 2 15.637 3.742 26.149 1 76.79 ? CAX XNJ 401 A 1 HETATM 13 C CAV XNJ . . . B 2 14.392 4.33 25.98 1 67.34 ? CAV XNJ 401 A 1 HETATM 14 C CAU XNJ . . . B 2 13.169 3.473 25.943 1 60.3 ? CAU XNJ 401 A 1 HETATM 15 O OAW XNJ . . . B 2 13.202 2.317 26.349 1 63.35 ? OAW XNJ 401 A 1 HETATM 16 N NAT XNJ . . . B 2 12.061 4.023 25.401 1 43.39 ? NAT XNJ 401 A 1 HETATM 17 C CAO XNJ . . . B 2 10.84 3.346 25.215 1 36.36 ? CAO XNJ 401 A 1 HETATM 18 C CAN XNJ . . . B 2 10.504 2.878 23.953 1 36.23 ? CAN XNJ 401 A 1 HETATM 19 C CAP XNJ . . . B 2 9.987 3.121 26.289 1 36.6 ? CAP XNJ 401 A 1 HETATM 20 C CAQ XNJ . . . B 2 8.802 2.436 26.096 1 35.05 ? CAQ XNJ 401 A 1 HETATM 21 C CAR XNJ . . . B 2 8.438 1.962 24.835 1 30.45 ? CAR XNJ 401 A 1 HETATM 22 C CAS XNJ . . . B 2 7.138 1.229 24.662 1 30.42 ? CAS XNJ 401 A 1 HETATM 23 C CAM XNJ . . . B 2 9.303 2.199 23.763 1 30.61 ? CAM XNJ 401 A 1 HETATM 24 N NAL XNJ . . . B 2 8.966 1.708 22.484 1 28.4 ? NAL XNJ 401 A 1 HETATM 25 C CAJ XNJ . . . B 2 9.8 1.211 21.533 1 30.3 ? CAJ XNJ 401 A 1 HETATM 26 N NAK XNJ . . . B 2 9.386 0.906 20.339 1 30.45 ? NAK XNJ 401 A 1 HETATM 27 S SAI XNJ . . . B 2 11.489 0.899 21.809 1 33.69 ? SAI XNJ 401 A 1 HETATM 28 C CAH XNJ . . . B 2 11.612 0.253 20.223 1 33.7 ? CAH XNJ 401 A 1 HETATM 29 C CAG XNJ . . . B 2 10.414 0.323 19.595 1 31.22 ? CAG XNJ 401 A 1 HETATM 30 C CAF XNJ . . . B 2 10.119 -0.164 18.244 1 27.63 ? CAF XNJ 401 A 1 HETATM 31 C CAA XNJ . . . B 2 11.072 -0.84 17.491 1 30.75 ? CAA XNJ 401 A 1 HETATM 32 C CAB XNJ . . . B 2 10.761 -1.302 16.232 1 28.56 ? CAB XNJ 401 A 1 HETATM 33 C CAC XNJ . . . B 2 9.496 -1.066 15.746 1 28.78 ? CAC XNJ 401 A 1 HETATM 34 N NAD XNJ . . . B 2 8.549 -0.432 16.452 1 23.85 ? NAD XNJ 401 A 1 HETATM 35 C CAE XNJ . . . B 2 8.868 0.01 17.673 1 29.15 ? CAE XNJ 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #