data_7L61 # _model_server_result.job_id mlbBJRk2CjXBqXJGjsmtFg _model_server_result.datetime_utc '2025-08-24 05:05:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 7L61 # _exptl.entry_id 7L61 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.94 _cell.angle_gamma 90 _cell.entry_id 7L61 _cell.length_a 33.062 _cell.length_b 56.525 _cell.length_c 34.536 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 FUC GAL C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC A 902 GLC 2 n B GAL 2 B 2 GAL A 901 GAL 2 n B FUC 3 B 3 FUC A 900 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 662 1_555 A SG CYS 133 A CYS 759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 109 A CYS 735 1_555 A SG CYS 125 A CYS 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 B O4 BGC . B BGC 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 B O2 GAL . B GAL 2 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A OE1 GLU 99 A GLU 725 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc2 A OD1 ASN 101 A ASN 727 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc3 A OE1 GLU 107 A GLU 733 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc4 A OD1 ASN 121 A ASN 747 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc5 A O ASP 122 A ASP 748 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc6 A OD1 ASP 122 A ASP 748 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc7 C CA CA . A CA 800 1_555 B O3 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc8 C CA CA . A CA 800 1_555 B O4 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7L61 _atom_sites.fract_transf_matrix[1][1] 0.030246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.012801 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031442 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 800 800 CA CA . D 4 HOH A 1 901 108 HOH HOH . D 4 HOH A 2 902 117 HOH HOH . D 4 HOH A 3 903 123 HOH HOH . D 4 HOH A 4 904 58 HOH HOH . D 4 HOH A 5 905 105 HOH HOH . D 4 HOH A 6 906 107 HOH HOH . D 4 HOH A 7 907 72 HOH HOH . D 4 HOH A 8 908 129 HOH HOH . D 4 HOH A 9 909 78 HOH HOH . D 4 HOH A 10 910 133 HOH HOH . D 4 HOH A 11 911 73 HOH HOH . D 4 HOH A 12 912 29 HOH HOH . D 4 HOH A 13 913 96 HOH HOH . D 4 HOH A 14 914 81 HOH HOH . D 4 HOH A 15 915 136 HOH HOH . D 4 HOH A 16 916 148 HOH HOH . D 4 HOH A 17 917 149 HOH HOH . D 4 HOH A 18 918 77 HOH HOH . D 4 HOH A 19 919 19 HOH HOH . D 4 HOH A 20 920 8 HOH HOH . D 4 HOH A 21 921 114 HOH HOH . D 4 HOH A 22 922 39 HOH HOH . D 4 HOH A 23 923 65 HOH HOH . D 4 HOH A 24 924 43 HOH HOH . D 4 HOH A 25 925 42 HOH HOH . D 4 HOH A 26 926 57 HOH HOH . D 4 HOH A 27 927 138 HOH HOH . D 4 HOH A 28 928 7 HOH HOH . D 4 HOH A 29 929 38 HOH HOH . D 4 HOH A 30 930 52 HOH HOH . D 4 HOH A 31 931 131 HOH HOH . D 4 HOH A 32 932 3 HOH HOH . D 4 HOH A 33 933 10 HOH HOH . D 4 HOH A 34 934 6 HOH HOH . D 4 HOH A 35 935 5 HOH HOH . D 4 HOH A 36 936 16 HOH HOH . D 4 HOH A 37 937 25 HOH HOH . D 4 HOH A 38 938 53 HOH HOH . D 4 HOH A 39 939 2 HOH HOH . D 4 HOH A 40 940 82 HOH HOH . D 4 HOH A 41 941 63 HOH HOH . D 4 HOH A 42 942 84 HOH HOH . D 4 HOH A 43 943 67 HOH HOH . D 4 HOH A 44 944 36 HOH HOH . D 4 HOH A 45 945 28 HOH HOH . D 4 HOH A 46 946 11 HOH HOH . D 4 HOH A 47 947 15 HOH HOH . D 4 HOH A 48 948 35 HOH HOH . D 4 HOH A 49 949 54 HOH HOH . D 4 HOH A 50 950 150 HOH HOH . D 4 HOH A 51 951 26 HOH HOH . D 4 HOH A 52 952 41 HOH HOH . D 4 HOH A 53 953 132 HOH HOH . D 4 HOH A 54 954 147 HOH HOH . D 4 HOH A 55 955 68 HOH HOH . D 4 HOH A 56 956 112 HOH HOH . D 4 HOH A 57 957 4 HOH HOH . D 4 HOH A 58 958 91 HOH HOH . D 4 HOH A 59 959 34 HOH HOH . D 4 HOH A 60 960 99 HOH HOH . D 4 HOH A 61 961 140 HOH HOH . D 4 HOH A 62 962 30 HOH HOH . D 4 HOH A 63 963 22 HOH HOH . D 4 HOH A 64 964 69 HOH HOH . D 4 HOH A 65 965 50 HOH HOH . D 4 HOH A 66 966 31 HOH HOH . D 4 HOH A 67 967 93 HOH HOH . D 4 HOH A 68 968 125 HOH HOH . D 4 HOH A 69 969 21 HOH HOH . D 4 HOH A 70 970 86 HOH HOH . D 4 HOH A 71 971 20 HOH HOH . D 4 HOH A 72 972 17 HOH HOH . D 4 HOH A 73 973 94 HOH HOH . D 4 HOH A 74 974 1 HOH HOH . D 4 HOH A 75 975 56 HOH HOH . D 4 HOH A 76 976 44 HOH HOH . D 4 HOH A 77 977 89 HOH HOH . D 4 HOH A 78 978 87 HOH HOH . D 4 HOH A 79 979 59 HOH HOH . D 4 HOH A 80 980 24 HOH HOH . D 4 HOH A 81 981 27 HOH HOH . D 4 HOH A 82 982 134 HOH HOH . D 4 HOH A 83 983 126 HOH HOH . D 4 HOH A 84 984 32 HOH HOH . D 4 HOH A 85 985 116 HOH HOH . D 4 HOH A 86 986 74 HOH HOH . D 4 HOH A 87 987 119 HOH HOH . D 4 HOH A 88 988 9 HOH HOH . D 4 HOH A 89 989 49 HOH HOH . D 4 HOH A 90 990 60 HOH HOH . D 4 HOH A 91 991 14 HOH HOH . D 4 HOH A 92 992 46 HOH HOH . D 4 HOH A 93 993 75 HOH HOH . D 4 HOH A 94 994 110 HOH HOH . D 4 HOH A 95 995 33 HOH HOH . D 4 HOH A 96 996 62 HOH HOH . D 4 HOH A 97 997 100 HOH HOH . D 4 HOH A 98 998 18 HOH HOH . D 4 HOH A 99 999 12 HOH HOH . D 4 HOH A 100 1000 113 HOH HOH . D 4 HOH A 101 1001 95 HOH HOH . D 4 HOH A 102 1002 37 HOH HOH . D 4 HOH A 103 1003 40 HOH HOH . D 4 HOH A 104 1004 76 HOH HOH . D 4 HOH A 105 1005 122 HOH HOH . D 4 HOH A 106 1006 103 HOH HOH . D 4 HOH A 107 1007 66 HOH HOH . D 4 HOH A 108 1008 137 HOH HOH . D 4 HOH A 109 1009 70 HOH HOH . D 4 HOH A 110 1010 98 HOH HOH . D 4 HOH A 111 1011 101 HOH HOH . D 4 HOH A 112 1012 135 HOH HOH . D 4 HOH A 113 1013 106 HOH HOH . D 4 HOH A 114 1014 85 HOH HOH . D 4 HOH A 115 1015 124 HOH HOH . D 4 HOH A 116 1016 146 HOH HOH . D 4 HOH A 117 1017 151 HOH HOH . D 4 HOH A 118 1018 130 HOH HOH . D 4 HOH A 119 1019 71 HOH HOH . D 4 HOH A 120 1020 143 HOH HOH . D 4 HOH A 121 1021 79 HOH HOH . D 4 HOH A 122 1022 13 HOH HOH . D 4 HOH A 123 1023 102 HOH HOH . D 4 HOH A 124 1024 118 HOH HOH . D 4 HOH A 125 1025 145 HOH HOH . D 4 HOH A 126 1026 120 HOH HOH . D 4 HOH A 127 1027 109 HOH HOH . D 4 HOH A 128 1028 51 HOH HOH . D 4 HOH A 129 1029 83 HOH HOH . D 4 HOH A 130 1030 88 HOH HOH . D 4 HOH A 131 1031 64 HOH HOH . D 4 HOH A 132 1032 121 HOH HOH . D 4 HOH A 133 1033 127 HOH HOH . D 4 HOH A 134 1034 47 HOH HOH . D 4 HOH A 135 1035 115 HOH HOH . D 4 HOH A 136 1036 142 HOH HOH . D 4 HOH A 137 1037 23 HOH HOH . D 4 HOH A 138 1038 141 HOH HOH . D 4 HOH A 139 1039 139 HOH HOH . D 4 HOH A 140 1040 80 HOH HOH . D 4 HOH A 141 1041 61 HOH HOH . D 4 HOH A 142 1042 45 HOH HOH . D 4 HOH A 143 1043 97 HOH HOH . D 4 HOH A 144 1044 55 HOH HOH . D 4 HOH A 145 1045 48 HOH HOH . D 4 HOH A 146 1046 104 HOH HOH . D 4 HOH A 147 1047 90 HOH HOH . D 4 HOH A 148 1048 128 HOH HOH . D 4 HOH A 149 1049 144 HOH HOH . D 4 HOH A 150 1050 111 HOH HOH . D 4 HOH A 151 1051 92 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.199 _atom_site.Cartn_y -11.803 _atom_site.Cartn_z -4.047 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 800 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #