data_7L62 # _model_server_result.job_id lQXOjKtrRgHPepFf8OXelg _model_server_result.datetime_utc '2025-07-18 04:00:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 7L62 # _exptl.entry_id 7L62 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95 _cell.angle_gamma 90 _cell.entry_id 7L62 _cell.length_a 34.084 _cell.length_b 54.065 _cell.length_c 35.876 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 FUC GAL C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC A 902 GLC 2 n B GAL 2 B 2 GAL A 901 GAL 2 n B FUC 3 B 3 FUC A 900 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 628 1_555 A SG CYS 15 A CYS 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 36 A CYS 662 1_555 A SG CYS 133 A CYS 759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 109 A CYS 735 1_555 A SG CYS 125 A CYS 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? covale ? covale1 B O4 BGC . B BGC 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 B O2 GAL . B GAL 2 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A OE1 GLU 99 A GLU 725 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc2 A OD1 ASN 101 A ASN 727 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc3 A OE1 GLU 107 A GLU 733 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc4 A OD1 ASN 121 A ASN 747 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc5 A O ASP 122 A ASP 748 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc6 A OD1 ASP 122 A ASP 748 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc7 C CA CA . A CA 800 1_555 B O3 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc8 C CA CA . A CA 800 1_555 B O4 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7L62 _atom_sites.fract_transf_matrix[1][1] 0.029339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002566 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 800 800 CA CA . D 4 HOH A 1 901 64 HOH HOH . D 4 HOH A 2 902 187 HOH HOH . D 4 HOH A 3 903 196 HOH HOH . D 4 HOH A 4 904 39 HOH HOH . D 4 HOH A 5 905 116 HOH HOH . D 4 HOH A 6 906 6 HOH HOH . D 4 HOH A 7 907 136 HOH HOH . D 4 HOH A 8 908 37 HOH HOH . D 4 HOH A 9 909 5 HOH HOH . D 4 HOH A 10 910 61 HOH HOH . D 4 HOH A 11 911 174 HOH HOH . D 4 HOH A 12 912 201 HOH HOH . D 4 HOH A 13 913 141 HOH HOH . D 4 HOH A 14 914 124 HOH HOH . D 4 HOH A 15 915 194 HOH HOH . D 4 HOH A 16 916 38 HOH HOH . D 4 HOH A 17 917 104 HOH HOH . D 4 HOH A 18 918 197 HOH HOH . D 4 HOH A 19 919 49 HOH HOH . D 4 HOH A 20 920 96 HOH HOH . D 4 HOH A 21 921 12 HOH HOH . D 4 HOH A 22 922 106 HOH HOH . D 4 HOH A 23 923 87 HOH HOH . D 4 HOH A 24 924 15 HOH HOH . D 4 HOH A 25 925 8 HOH HOH . D 4 HOH A 26 926 84 HOH HOH . D 4 HOH A 27 927 127 HOH HOH . D 4 HOH A 28 928 71 HOH HOH . D 4 HOH A 29 929 74 HOH HOH . D 4 HOH A 30 930 155 HOH HOH . D 4 HOH A 31 931 7 HOH HOH . D 4 HOH A 32 932 3 HOH HOH . D 4 HOH A 33 933 147 HOH HOH . D 4 HOH A 34 934 109 HOH HOH . D 4 HOH A 35 935 31 HOH HOH . D 4 HOH A 36 936 137 HOH HOH . D 4 HOH A 37 937 62 HOH HOH . D 4 HOH A 38 938 129 HOH HOH . D 4 HOH A 39 939 77 HOH HOH . D 4 HOH A 40 940 33 HOH HOH . D 4 HOH A 41 941 24 HOH HOH . D 4 HOH A 42 942 45 HOH HOH . D 4 HOH A 43 943 19 HOH HOH . D 4 HOH A 44 944 173 HOH HOH . D 4 HOH A 45 945 111 HOH HOH . D 4 HOH A 46 946 43 HOH HOH . D 4 HOH A 47 947 63 HOH HOH . D 4 HOH A 48 948 4 HOH HOH . D 4 HOH A 49 949 13 HOH HOH . D 4 HOH A 50 950 16 HOH HOH . D 4 HOH A 51 951 10 HOH HOH . D 4 HOH A 52 952 103 HOH HOH . D 4 HOH A 53 953 17 HOH HOH . D 4 HOH A 54 954 81 HOH HOH . D 4 HOH A 55 955 83 HOH HOH . D 4 HOH A 56 956 22 HOH HOH . D 4 HOH A 57 957 85 HOH HOH . D 4 HOH A 58 958 195 HOH HOH . D 4 HOH A 59 959 91 HOH HOH . D 4 HOH A 60 960 30 HOH HOH . D 4 HOH A 61 961 36 HOH HOH . D 4 HOH A 62 962 34 HOH HOH . D 4 HOH A 63 963 72 HOH HOH . D 4 HOH A 64 964 25 HOH HOH . D 4 HOH A 65 965 11 HOH HOH . D 4 HOH A 66 966 177 HOH HOH . D 4 HOH A 67 967 46 HOH HOH . D 4 HOH A 68 968 107 HOH HOH . D 4 HOH A 69 969 115 HOH HOH . D 4 HOH A 70 970 144 HOH HOH . D 4 HOH A 71 971 1 HOH HOH . D 4 HOH A 72 972 86 HOH HOH . D 4 HOH A 73 973 118 HOH HOH . D 4 HOH A 74 974 133 HOH HOH . D 4 HOH A 75 975 192 HOH HOH . D 4 HOH A 76 976 67 HOH HOH . D 4 HOH A 77 977 95 HOH HOH . D 4 HOH A 78 978 56 HOH HOH . D 4 HOH A 79 979 20 HOH HOH . D 4 HOH A 80 980 161 HOH HOH . D 4 HOH A 81 981 203 HOH HOH . D 4 HOH A 82 982 146 HOH HOH . D 4 HOH A 83 983 2 HOH HOH . D 4 HOH A 84 984 47 HOH HOH . D 4 HOH A 85 985 160 HOH HOH . D 4 HOH A 86 986 175 HOH HOH . D 4 HOH A 87 987 121 HOH HOH . D 4 HOH A 88 988 50 HOH HOH . D 4 HOH A 89 989 143 HOH HOH . D 4 HOH A 90 990 29 HOH HOH . D 4 HOH A 91 991 52 HOH HOH . D 4 HOH A 92 992 18 HOH HOH . D 4 HOH A 93 993 108 HOH HOH . D 4 HOH A 94 994 166 HOH HOH . D 4 HOH A 95 995 132 HOH HOH . D 4 HOH A 96 996 59 HOH HOH . D 4 HOH A 97 997 202 HOH HOH . D 4 HOH A 98 998 94 HOH HOH . D 4 HOH A 99 999 51 HOH HOH . D 4 HOH A 100 1000 69 HOH HOH . D 4 HOH A 101 1001 186 HOH HOH . D 4 HOH A 102 1002 66 HOH HOH . D 4 HOH A 103 1003 26 HOH HOH . D 4 HOH A 104 1004 14 HOH HOH . D 4 HOH A 105 1005 99 HOH HOH . D 4 HOH A 106 1006 181 HOH HOH . D 4 HOH A 107 1007 138 HOH HOH . D 4 HOH A 108 1008 28 HOH HOH . D 4 HOH A 109 1009 68 HOH HOH . D 4 HOH A 110 1010 21 HOH HOH . D 4 HOH A 111 1011 54 HOH HOH . D 4 HOH A 112 1012 130 HOH HOH . D 4 HOH A 113 1013 151 HOH HOH . D 4 HOH A 114 1014 32 HOH HOH . D 4 HOH A 115 1015 100 HOH HOH . D 4 HOH A 116 1016 65 HOH HOH . D 4 HOH A 117 1017 60 HOH HOH . D 4 HOH A 118 1018 172 HOH HOH . D 4 HOH A 119 1019 79 HOH HOH . D 4 HOH A 120 1020 178 HOH HOH . D 4 HOH A 121 1021 75 HOH HOH . D 4 HOH A 122 1022 156 HOH HOH . D 4 HOH A 123 1023 42 HOH HOH . D 4 HOH A 124 1024 123 HOH HOH . D 4 HOH A 125 1025 44 HOH HOH . D 4 HOH A 126 1026 9 HOH HOH . D 4 HOH A 127 1027 153 HOH HOH . D 4 HOH A 128 1028 92 HOH HOH . D 4 HOH A 129 1029 167 HOH HOH . D 4 HOH A 130 1030 120 HOH HOH . D 4 HOH A 131 1031 23 HOH HOH . D 4 HOH A 132 1032 131 HOH HOH . D 4 HOH A 133 1033 183 HOH HOH . D 4 HOH A 134 1034 139 HOH HOH . D 4 HOH A 135 1035 190 HOH HOH . D 4 HOH A 136 1036 125 HOH HOH . D 4 HOH A 137 1037 182 HOH HOH . D 4 HOH A 138 1038 185 HOH HOH . D 4 HOH A 139 1039 184 HOH HOH . D 4 HOH A 140 1040 159 HOH HOH . D 4 HOH A 141 1041 105 HOH HOH . D 4 HOH A 142 1042 114 HOH HOH . D 4 HOH A 143 1043 158 HOH HOH . D 4 HOH A 144 1044 76 HOH HOH . D 4 HOH A 145 1045 154 HOH HOH . D 4 HOH A 146 1046 73 HOH HOH . D 4 HOH A 147 1047 189 HOH HOH . D 4 HOH A 148 1048 199 HOH HOH . D 4 HOH A 149 1049 149 HOH HOH . D 4 HOH A 150 1050 90 HOH HOH . D 4 HOH A 151 1051 58 HOH HOH . D 4 HOH A 152 1052 55 HOH HOH . D 4 HOH A 153 1053 97 HOH HOH . D 4 HOH A 154 1054 57 HOH HOH . D 4 HOH A 155 1055 142 HOH HOH . D 4 HOH A 156 1056 122 HOH HOH . D 4 HOH A 157 1057 82 HOH HOH . D 4 HOH A 158 1058 98 HOH HOH . D 4 HOH A 159 1059 140 HOH HOH . D 4 HOH A 160 1060 162 HOH HOH . D 4 HOH A 161 1061 128 HOH HOH . D 4 HOH A 162 1062 88 HOH HOH . D 4 HOH A 163 1063 188 HOH HOH . D 4 HOH A 164 1064 80 HOH HOH . D 4 HOH A 165 1065 191 HOH HOH . D 4 HOH A 166 1066 180 HOH HOH . D 4 HOH A 167 1067 53 HOH HOH . D 4 HOH A 168 1068 117 HOH HOH . D 4 HOH A 169 1069 135 HOH HOH . D 4 HOH A 170 1070 145 HOH HOH . D 4 HOH A 171 1071 152 HOH HOH . D 4 HOH A 172 1072 112 HOH HOH . D 4 HOH A 173 1073 150 HOH HOH . D 4 HOH A 174 1074 198 HOH HOH . D 4 HOH A 175 1075 148 HOH HOH . D 4 HOH A 176 1076 78 HOH HOH . D 4 HOH A 177 1077 134 HOH HOH . D 4 HOH A 178 1078 89 HOH HOH . D 4 HOH A 179 1079 93 HOH HOH . D 4 HOH A 180 1080 168 HOH HOH . D 4 HOH A 181 1081 110 HOH HOH . D 4 HOH A 182 1082 113 HOH HOH . D 4 HOH A 183 1083 169 HOH HOH . D 4 HOH A 184 1084 176 HOH HOH . D 4 HOH A 185 1085 171 HOH HOH . D 4 HOH A 186 1086 41 HOH HOH . D 4 HOH A 187 1087 170 HOH HOH . D 4 HOH A 188 1088 119 HOH HOH . D 4 HOH A 189 1089 179 HOH HOH . D 4 HOH A 190 1090 163 HOH HOH . D 4 HOH A 191 1091 101 HOH HOH . D 4 HOH A 192 1092 35 HOH HOH . D 4 HOH A 193 1093 27 HOH HOH . D 4 HOH A 194 1094 157 HOH HOH . D 4 HOH A 195 1095 193 HOH HOH . D 4 HOH A 196 1096 164 HOH HOH . D 4 HOH A 197 1097 40 HOH HOH . D 4 HOH A 198 1098 200 HOH HOH . D 4 HOH A 199 1099 48 HOH HOH . D 4 HOH A 200 1100 126 HOH HOH . D 4 HOH A 201 1101 102 HOH HOH . D 4 HOH A 202 1102 165 HOH HOH . D 4 HOH A 203 1103 70 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -8.726 _atom_site.Cartn_y 10.238 _atom_site.Cartn_z 13.964 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 9.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 800 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #