data_7L63 # _model_server_result.job_id Hwvrae00N8k5L3H1gc3C1g _model_server_result.datetime_utc '2025-07-01 01:57:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l63 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 7L63 # _exptl.entry_id 7L63 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.31 _cell.angle_gamma 90 _cell.entry_id 7L63 _cell.length_a 34.514 _cell.length_b 54.479 _cell.length_c 37.172 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L63 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 FUC GAL C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC A 902 GLC 2 n B GAL 2 B 2 GAL A 901 GAL 2 n B FUC 3 B 3 FUC A 900 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 628 1_555 A SG CYS 15 A CYS 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 36 A CYS 662 1_555 A SG CYS 133 A CYS 759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 109 A CYS 735 1_555 A SG CYS 125 A CYS 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 B O4 BGC . B BGC 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B O2 GAL . B GAL 2 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A OE1 GLU 99 A GLU 725 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc2 A OD1 ASN 101 A ASN 727 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc3 A OE1 GLU 107 A GLU 733 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc4 A OD1 ASN 121 A ASN 747 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc5 A O ASP 122 A ASP 748 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc6 A OD1 ASP 122 A ASP 748 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc7 C CA CA . A CA 800 1_555 B O2 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc8 C CA CA . A CA 800 1_555 B O3 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7L63 _atom_sites.fract_transf_matrix[1][1] 0.028974 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005796 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 800 800 CA CA . D 4 HOH A 1 901 89 HOH HOH . D 4 HOH A 2 902 15 HOH HOH . D 4 HOH A 3 903 13 HOH HOH . D 4 HOH A 4 904 72 HOH HOH . D 4 HOH A 5 905 50 HOH HOH . D 4 HOH A 6 906 41 HOH HOH . D 4 HOH A 7 907 104 HOH HOH . D 4 HOH A 8 908 19 HOH HOH . D 4 HOH A 9 909 1 HOH HOH . D 4 HOH A 10 910 60 HOH HOH . D 4 HOH A 11 911 98 HOH HOH . D 4 HOH A 12 912 28 HOH HOH . D 4 HOH A 13 913 110 HOH HOH . D 4 HOH A 14 914 17 HOH HOH . D 4 HOH A 15 915 126 HOH HOH . D 4 HOH A 16 916 53 HOH HOH . D 4 HOH A 17 917 46 HOH HOH . D 4 HOH A 18 918 2 HOH HOH . D 4 HOH A 19 919 109 HOH HOH . D 4 HOH A 20 920 65 HOH HOH . D 4 HOH A 21 921 59 HOH HOH . D 4 HOH A 22 922 67 HOH HOH . D 4 HOH A 23 923 91 HOH HOH . D 4 HOH A 24 924 14 HOH HOH . D 4 HOH A 25 925 5 HOH HOH . D 4 HOH A 26 926 9 HOH HOH . D 4 HOH A 27 927 117 HOH HOH . D 4 HOH A 28 928 27 HOH HOH . D 4 HOH A 29 929 22 HOH HOH . D 4 HOH A 30 930 102 HOH HOH . D 4 HOH A 31 931 44 HOH HOH . D 4 HOH A 32 932 3 HOH HOH . D 4 HOH A 33 933 43 HOH HOH . D 4 HOH A 34 934 30 HOH HOH . D 4 HOH A 35 935 88 HOH HOH . D 4 HOH A 36 936 92 HOH HOH . D 4 HOH A 37 937 7 HOH HOH . D 4 HOH A 38 938 75 HOH HOH . D 4 HOH A 39 939 56 HOH HOH . D 4 HOH A 40 940 64 HOH HOH . D 4 HOH A 41 941 57 HOH HOH . D 4 HOH A 42 942 90 HOH HOH . D 4 HOH A 43 943 86 HOH HOH . D 4 HOH A 44 944 120 HOH HOH . D 4 HOH A 45 945 16 HOH HOH . D 4 HOH A 46 946 66 HOH HOH . D 4 HOH A 47 947 4 HOH HOH . D 4 HOH A 48 948 24 HOH HOH . D 4 HOH A 49 949 61 HOH HOH . D 4 HOH A 50 950 18 HOH HOH . D 4 HOH A 51 951 116 HOH HOH . D 4 HOH A 52 952 118 HOH HOH . D 4 HOH A 53 953 31 HOH HOH . D 4 HOH A 54 954 42 HOH HOH . D 4 HOH A 55 955 74 HOH HOH . D 4 HOH A 56 956 93 HOH HOH . D 4 HOH A 57 957 51 HOH HOH . D 4 HOH A 58 958 47 HOH HOH . D 4 HOH A 59 959 36 HOH HOH . D 4 HOH A 60 960 71 HOH HOH . D 4 HOH A 61 961 54 HOH HOH . D 4 HOH A 62 962 103 HOH HOH . D 4 HOH A 63 963 58 HOH HOH . D 4 HOH A 64 964 108 HOH HOH . D 4 HOH A 65 965 130 HOH HOH . D 4 HOH A 66 966 35 HOH HOH . D 4 HOH A 67 967 32 HOH HOH . D 4 HOH A 68 968 26 HOH HOH . D 4 HOH A 69 969 84 HOH HOH . D 4 HOH A 70 970 121 HOH HOH . D 4 HOH A 71 971 39 HOH HOH . D 4 HOH A 72 972 6 HOH HOH . D 4 HOH A 73 973 37 HOH HOH . D 4 HOH A 74 974 10 HOH HOH . D 4 HOH A 75 975 113 HOH HOH . D 4 HOH A 76 976 20 HOH HOH . D 4 HOH A 77 977 119 HOH HOH . D 4 HOH A 78 978 38 HOH HOH . D 4 HOH A 79 979 78 HOH HOH . D 4 HOH A 80 980 34 HOH HOH . D 4 HOH A 81 981 111 HOH HOH . D 4 HOH A 82 982 23 HOH HOH . D 4 HOH A 83 983 11 HOH HOH . D 4 HOH A 84 984 81 HOH HOH . D 4 HOH A 85 985 76 HOH HOH . D 4 HOH A 86 986 29 HOH HOH . D 4 HOH A 87 987 40 HOH HOH . D 4 HOH A 88 988 97 HOH HOH . D 4 HOH A 89 989 49 HOH HOH . D 4 HOH A 90 990 115 HOH HOH . D 4 HOH A 91 991 131 HOH HOH . D 4 HOH A 92 992 125 HOH HOH . D 4 HOH A 93 993 62 HOH HOH . D 4 HOH A 94 994 123 HOH HOH . D 4 HOH A 95 995 127 HOH HOH . D 4 HOH A 96 996 105 HOH HOH . D 4 HOH A 97 997 87 HOH HOH . D 4 HOH A 98 998 95 HOH HOH . D 4 HOH A 99 999 79 HOH HOH . D 4 HOH A 100 1000 52 HOH HOH . D 4 HOH A 101 1001 107 HOH HOH . D 4 HOH A 102 1002 82 HOH HOH . D 4 HOH A 103 1003 63 HOH HOH . D 4 HOH A 104 1004 21 HOH HOH . D 4 HOH A 105 1005 80 HOH HOH . D 4 HOH A 106 1006 114 HOH HOH . D 4 HOH A 107 1007 112 HOH HOH . D 4 HOH A 108 1008 100 HOH HOH . D 4 HOH A 109 1009 96 HOH HOH . D 4 HOH A 110 1010 48 HOH HOH . D 4 HOH A 111 1011 122 HOH HOH . D 4 HOH A 112 1012 33 HOH HOH . D 4 HOH A 113 1013 77 HOH HOH . D 4 HOH A 114 1014 68 HOH HOH . D 4 HOH A 115 1015 73 HOH HOH . D 4 HOH A 116 1016 129 HOH HOH . D 4 HOH A 117 1017 25 HOH HOH . D 4 HOH A 118 1018 55 HOH HOH . D 4 HOH A 119 1019 124 HOH HOH . D 4 HOH A 120 1020 83 HOH HOH . D 4 HOH A 121 1021 8 HOH HOH . D 4 HOH A 122 1022 101 HOH HOH . D 4 HOH A 123 1023 70 HOH HOH . D 4 HOH A 124 1024 94 HOH HOH . D 4 HOH A 125 1025 85 HOH HOH . D 4 HOH A 126 1026 12 HOH HOH . D 4 HOH A 127 1027 106 HOH HOH . D 4 HOH A 128 1028 132 HOH HOH . D 4 HOH A 129 1029 69 HOH HOH . D 4 HOH A 130 1030 45 HOH HOH . D 4 HOH A 131 1031 99 HOH HOH . D 4 HOH A 132 1032 128 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -8.955 _atom_site.Cartn_y 22.209 _atom_site.Cartn_z 13.116 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 800 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 116 _model_server_stats.create_model_time_ms 79 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #