data_7L6Q
#
_model_server_result.job_id            VGiOaE_GRyujFry0zK8QRw 
_model_server_result.datetime_utc      '2024-10-13 00:21:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l6q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":403}' 
#
_entry.id    7L6Q 
#
_exptl.entry_id    7L6Q 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7L6Q 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L6Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 H N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 490 n n 
CAD HAD PGW sing 491 n n 
CAD HADA PGW sing 492 n n 
OAE CAD PGW sing 493 n n 
OAE HOAE PGW sing 494 n n 
OAF C05 PGW sing 495 n n 
OAF HOAF PGW sing 496 n n 
P O13 PGW sing 497 n n 
P O11 PGW sing 498 n n 
C01 O03 PGW sing 499 n n 
C01 C02 PGW sing 500 n n 
C01 H01 PGW sing 501 n n 
C01 H01A PGW sing 502 n n 
C1 C2 PGW sing 503 n n 
O01 C1 PGW sing 504 n n 
C02 O01 PGW sing 505 n n 
C02 H02 PGW sing 506 n n 
C2 C3 PGW sing 507 n n 
C2 H2 PGW sing 508 n n 
C2 H2A PGW sing 509 n n 
O02 C1 PGW doub 510 n n 
C03 C02 PGW sing 511 n n 
C03 H03 PGW sing 512 n n 
C03 H03A PGW sing 513 n n 
C3 C4 PGW sing 514 n n 
C3 H3 PGW sing 515 n n 
C3 H3A PGW sing 516 n n 
C04 C05 PGW sing 517 n n 
C04 O12 PGW sing 518 n n 
C04 H04 PGW sing 519 n n 
C04 H04A PGW sing 520 n n 
C4 C5 PGW sing 521 n n 
C4 H4 PGW sing 522 n n 
C4 H4A PGW sing 523 n n 
O04 C19 PGW doub 524 n n 
C05 H05 PGW sing 525 n n 
C5 C6 PGW sing 526 n n 
C5 H5 PGW sing 527 n n 
C5 H5A PGW sing 528 n n 
C06 C07 PGW sing 529 n n 
C06 H06 PGW sing 530 n n 
C06 H06A PGW sing 531 n n 
C6 C7 PGW sing 532 n n 
C6 H6 PGW sing 533 n n 
C6 H6A PGW sing 534 n n 
C07 H07 PGW sing 535 n n 
C07 H07A PGW sing 536 n n 
C7 C8 PGW sing 537 n n 
C7 H7 PGW sing 538 n n 
C7 H7A PGW sing 539 n n 
C08 C07 PGW sing 540 n n 
C08 H08 PGW sing 541 n n 
C08 H08A PGW sing 542 n n 
C8 C9 PGW sing 543 n n 
C8 H8 PGW sing 544 n n 
C8 H8A PGW sing 545 n n 
C09 C08 PGW sing 546 n n 
C09 C11 PGW sing 547 n n 
C09 H09 PGW sing 548 n n 
C09 H09A PGW sing 549 n n 
C9 C10 PGW doub 550 z n 
C10 C06 PGW sing 551 n n 
C11 H11 PGW sing 552 n n 
C11 H11A PGW sing 553 n n 
O11 C03 PGW sing 554 n n 
C12 C11 PGW sing 555 n n 
C12 H12 PGW sing 556 n n 
C12 H12A PGW sing 557 n n 
O12 P PGW sing 558 n n 
C13 C12 PGW sing 559 n n 
C13 C14 PGW sing 560 n n 
C13 H13 PGW sing 561 n n 
C13 H13A PGW sing 562 n n 
O13 HO13 PGW sing 563 n n 
C14 H14 PGW sing 564 n n 
C14 H14A PGW sing 565 n n 
C14 H14B PGW sing 566 n n 
O14 P PGW doub 567 n n 
C15 C16 PGW sing 568 n n 
C15 H15 PGW sing 569 n n 
C15 H15A PGW sing 570 n n 
C16 H16 PGW sing 571 n n 
C16 H16A PGW sing 572 n n 
C17 C16 PGW sing 573 n n 
C17 C18 PGW sing 574 n n 
C17 H17 PGW sing 575 n n 
C17 H17A PGW sing 576 n n 
C18 C28 PGW sing 577 n n 
C18 H18 PGW sing 578 n n 
C18 H18A PGW sing 579 n n 
C19 O03 PGW sing 580 n n 
C19 C20 PGW sing 581 n n 
C20 C21 PGW sing 582 n n 
C20 H20 PGW sing 583 n n 
C20 H20A PGW sing 584 n n 
C21 C22 PGW sing 585 n n 
C21 H21 PGW sing 586 n n 
C21 H21A PGW sing 587 n n 
C22 C23 PGW sing 588 n n 
C22 H22 PGW sing 589 n n 
C22 H22A PGW sing 590 n n 
C23 C24 PGW sing 591 n n 
C23 H23 PGW sing 592 n n 
C23 H23A PGW sing 593 n n 
C24 C25 PGW sing 594 n n 
C24 H24 PGW sing 595 n n 
C24 H24A PGW sing 596 n n 
C25 C26 PGW sing 597 n n 
C25 H25 PGW sing 598 n n 
C25 H25A PGW sing 599 n n 
C26 C27 PGW sing 600 n n 
C26 H26 PGW sing 601 n n 
C26 H26A PGW sing 602 n n 
C27 C15 PGW sing 603 n n 
C27 H27 PGW sing 604 n n 
C27 H27A PGW sing 605 n n 
C28 H28 PGW sing 606 n n 
C28 H28A PGW sing 607 n n 
C29 H29 PGW sing 608 n n 
C29 H29A PGW sing 609 n n 
C29 H29B PGW sing 610 n n 
C30 C28 PGW sing 611 n n 
C30 C29 PGW sing 612 n n 
C30 H30 PGW sing 613 n n 
C30 H30A PGW sing 614 n n 
C9 H9 PGW sing 615 n n 
C10 H10 PGW sing 616 n n 
#
_atom_sites.entry_id                     7L6Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 PGW A 1 401 323 PGW PGW . 
G 3 CDL A 1 402 324 CDL CDL . 
H 2 PGW A 1 403 323 PGW PGW . 
I 2 PGW B 1 401 323 PGW PGW . 
J 3 CDL B 1 402 324 CDL CDL . 
K 2 PGW C 1 401 323 PGW PGW . 
L 3 CDL C 1 402 324 CDL CDL . 
M 2 PGW D 1 401 323 PGW PGW . 
N 3 CDL D 1 402 324 CDL CDL . 
O 3 CDL E 1 401 324 CDL CDL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAD PGW . . . H 2 151.41 121.206 181.205 1 76.15 ? CAD PGW 403 A 1 
HETATM 2 O OAE PGW . . . H 2 151.974 122.039 182.213 1 76.15 ? OAE PGW 403 A 1 
HETATM 3 O OAF PGW . . . H 2 150.872 121.204 178.845 1 76.15 ? OAF PGW 403 A 1 
HETATM 4 P P PGW . . . H 2 155.495 122.132 180.609 1 76.15 ? P PGW 403 A 1 
HETATM 5 C C01 PGW . . . H 2 157.515 120.879 176.396 1 76.15 ? C01 PGW 403 A 1 
HETATM 6 C C1 PGW . . . H 2 159.328 123.116 176.365 1 76.15 ? C1 PGW 403 A 1 
HETATM 7 O O01 PGW . . . H 2 158.844 122.727 177.623 1 76.15 ? O01 PGW 403 A 1 
HETATM 8 C C02 PGW . . . H 2 157.73 121.743 177.742 1 76.15 ? C02 PGW 403 A 1 
HETATM 9 C C2 PGW . . . H 2 158.567 124.056 175.371 1 76.15 ? C2 PGW 403 A 1 
HETATM 10 O O02 PGW . . . H 2 160.432 122.692 176.037 1 76.15 ? O02 PGW 403 A 1 
HETATM 11 C C03 PGW . . . H 2 156.395 122.532 178.056 1 76.15 ? C03 PGW 403 A 1 
HETATM 12 C C3 PGW . . . H 2 158.264 123.409 173.977 1 76.15 ? C3 PGW 403 A 1 
HETATM 13 O O03 PGW . . . H 2 156.125 120.778 175.948 1 76.15 ? O03 PGW 403 A 1 
HETATM 14 C C04 PGW . . . H 2 153.042 122.156 179.404 1 76.15 ? C04 PGW 403 A 1 
HETATM 15 C C4 PGW . . . H 2 158.796 124.197 172.756 1 76.15 ? C4 PGW 403 A 1 
HETATM 16 O O04 PGW . . . H 2 154.664 119.834 177.362 1 76.15 ? O04 PGW 403 A 1 
HETATM 17 C C05 PGW . . . H 2 151.519 121.98 179.828 1 76.15 ? C05 PGW 403 A 1 
HETATM 18 C C5 PGW . . . H 2 157.695 124.817 171.856 1 76.15 ? C5 PGW 403 A 1 
HETATM 19 C C06 PGW . . . H 2 153.432 124.696 166.583 1 76.15 ? C06 PGW 403 A 1 
HETATM 20 C C6 PGW . . . H 2 158.233 125.345 170.498 1 76.15 ? C6 PGW 403 A 1 
HETATM 21 C C07 PGW . . . H 2 153.306 123.892 165.262 1 76.15 ? C07 PGW 403 A 1 
HETATM 22 C C7 PGW . . . H 2 157.183 125.333 169.354 1 76.15 ? C7 PGW 403 A 1 
HETATM 23 C C08 PGW . . . H 2 154.562 123.014 164.914 1 76.15 ? C08 PGW 403 A 1 
HETATM 24 C C8 PGW . . . H 2 156.249 124.08 169.345 1 76.15 ? C8 PGW 403 A 1 
HETATM 25 C C09 PGW . . . H 2 155.504 123.672 163.849 1 76.15 ? C09 PGW 403 A 1 
HETATM 26 C C9 PGW . . . H 2 154.908 124.297 168.642 1 76.15 ? C9 PGW 403 A 1 
HETATM 27 C C10 PGW . . . H 2 154.753 124.48 167.3 1 76.15 ? C10 PGW 403 A 1 
HETATM 28 C C11 PGW . . . H 2 156.436 122.673 163.091 1 76.15 ? C11 PGW 403 A 1 
HETATM 29 O O11 PGW . . . H 2 156.376 122.96 179.39 1 76.15 ? O11 PGW 403 A 1 
HETATM 30 C C12 PGW . . . H 2 157.906 123.182 162.929 1 76.15 ? C12 PGW 403 A 1 
HETATM 31 O O12 PGW . . . H 2 153.861 122.612 180.452 1 76.15 ? O12 PGW 403 A 1 
HETATM 32 C C13 PGW . . . H 2 158.458 123.927 164.181 1 76.15 ? C13 PGW 403 A 1 
HETATM 33 O O13 PGW . . . H 2 156.014 122.626 181.939 1 76.15 ? O13 PGW 403 A 1 
HETATM 34 C C14 PGW . . . H 2 159.956 124.279 164.063 1 76.15 ? C14 PGW 403 A 1 
HETATM 35 O O14 PGW . . . H 2 155.55 120.637 180.39 1 76.15 ? O14 PGW 403 A 1 
HETATM 36 C C15 PGW . . . H 2 155.711 118.834 168.055 1 76.15 ? C15 PGW 403 A 1 
HETATM 37 C C16 PGW . . . H 2 156.602 119.41 166.907 1 76.15 ? C16 PGW 403 A 1 
HETATM 38 C C17 PGW . . . H 2 156.254 118.86 165.483 1 76.15 ? C17 PGW 403 A 1 
HETATM 39 C C18 PGW . . . H 2 157.333 117.889 164.88 1 76.15 ? C18 PGW 403 A 1 
HETATM 40 C C19 PGW . . . H 2 155.32 119.691 176.337 1 76.15 ? C19 PGW 403 A 1 
HETATM 41 C C20 PGW . . . H 2 155.244 118.353 175.543 1 76.15 ? C20 PGW 403 A 1 
HETATM 42 C C21 PGW . . . H 2 156.6 117.52 175.527 1 76.15 ? C21 PGW 403 A 1 
HETATM 43 C C22 PGW . . . H 2 157.341 117.43 174.13 1 76.15 ? C22 PGW 403 A 1 
HETATM 44 C C23 PGW . . . H 2 157.847 118.809 173.535 1 76.15 ? C23 PGW 403 A 1 
HETATM 45 C C24 PGW . . . H 2 156.823 119.525 172.58 1 76.15 ? C24 PGW 403 A 1 
HETATM 46 C C25 PGW . . . H 2 155.716 118.574 171.99 1 76.15 ? C25 PGW 403 A 1 
HETATM 47 C C26 PGW . . . H 2 155.996 118.065 170.54 1 76.15 ? C26 PGW 403 A 1 
HETATM 48 C C27 PGW . . . H 2 156.189 119.207 169.492 1 76.15 ? C27 PGW 403 A 1 
HETATM 49 C C28 PGW . . . H 2 156.993 117.351 163.452 1 76.15 ? C28 PGW 403 A 1 
HETATM 50 C C29 PGW . . . H 2 156.529 117.846 160.968 1 76.15 ? C29 PGW 403 A 1 
HETATM 51 C C30 PGW . . . H 2 156.915 118.439 162.34 1 76.15 ? C30 PGW 403 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           51 
#