data_7L7D
#
_model_server_result.job_id            bV6QAWq2FWmj9SzJb4_cKQ 
_model_server_result.datetime_utc      '2024-11-21 08:44:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l7d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    7L7D 
#
_exptl.entry_id    7L7D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.6 
_cell.angle_gamma         90 
_cell.entry_id            7L7D 
_cell.length_a            44.118 
_cell.length_b            81.583 
_cell.length_c            101.157 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L7D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 101 H CYS 101 1_555 A SG CYS 106 H CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 150 H CYS 150 1_555 A SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf5 B SG CYS 136 L CYS 136 1_555 B SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf6 C SG CYS 7 E CYS 336 1_555 C SG CYS 32 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf7 C SG CYS 50 E CYS 379 1_555 C SG CYS 103 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf8 C SG CYS 62 E CYS 391 1_555 C SG CYS 196 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf9 C SG CYS 151 E CYS 480 1_555 C SG CYS 159 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 C ND2 ASN 14 E ASN 343 1_555 H C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7L7D 
_atom_sites.fract_transf_matrix[1][1]    0.022666 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001823 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012257 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009918 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL H 1 301 301 GOL GOL . 
E 4 GOL H 1 302 401 GOL GOL . 
F 4 GOL L 1 301 301 GOL GOL . 
G 4 GOL L 1 302 401 GOL GOL . 
H 5 NAG E 1 601 629 NAG NAG . 
I 4 GOL E 1 602 701 GOL GOL . 
J 4 GOL E 1 603 801 GOL GOL . 
K 6 HOH H 1 401 231 HOH HOH . 
K 6 HOH H 2 402 203 HOH HOH . 
K 6 HOH H 3 403 93 HOH HOH . 
K 6 HOH H 4 404 65 HOH HOH . 
K 6 HOH H 5 405 3 HOH HOH . 
K 6 HOH H 6 406 64 HOH HOH . 
K 6 HOH H 7 407 15 HOH HOH . 
K 6 HOH H 8 408 47 HOH HOH . 
K 6 HOH H 9 409 79 HOH HOH . 
K 6 HOH H 10 410 35 HOH HOH . 
K 6 HOH H 11 411 229 HOH HOH . 
K 6 HOH H 12 412 178 HOH HOH . 
K 6 HOH H 13 413 6 HOH HOH . 
K 6 HOH H 14 414 94 HOH HOH . 
K 6 HOH H 15 415 24 HOH HOH . 
K 6 HOH H 16 416 91 HOH HOH . 
K 6 HOH H 17 417 148 HOH HOH . 
K 6 HOH H 18 418 86 HOH HOH . 
K 6 HOH H 19 419 23 HOH HOH . 
K 6 HOH H 20 420 153 HOH HOH . 
K 6 HOH H 21 421 12 HOH HOH . 
K 6 HOH H 22 422 76 HOH HOH . 
K 6 HOH H 23 423 116 HOH HOH . 
K 6 HOH H 24 424 204 HOH HOH . 
K 6 HOH H 25 425 114 HOH HOH . 
K 6 HOH H 26 426 144 HOH HOH . 
K 6 HOH H 27 427 42 HOH HOH . 
K 6 HOH H 28 428 87 HOH HOH . 
K 6 HOH H 29 429 101 HOH HOH . 
K 6 HOH H 30 430 85 HOH HOH . 
K 6 HOH H 31 431 83 HOH HOH . 
K 6 HOH H 32 432 22 HOH HOH . 
K 6 HOH H 33 433 44 HOH HOH . 
K 6 HOH H 34 434 81 HOH HOH . 
K 6 HOH H 35 435 58 HOH HOH . 
K 6 HOH H 36 436 63 HOH HOH . 
K 6 HOH H 37 437 177 HOH HOH . 
K 6 HOH H 38 438 150 HOH HOH . 
K 6 HOH H 39 439 9 HOH HOH . 
K 6 HOH H 40 440 78 HOH HOH . 
K 6 HOH H 41 441 206 HOH HOH . 
K 6 HOH H 42 442 104 HOH HOH . 
K 6 HOH H 43 443 71 HOH HOH . 
K 6 HOH H 44 444 46 HOH HOH . 
K 6 HOH H 45 445 98 HOH HOH . 
K 6 HOH H 46 446 230 HOH HOH . 
K 6 HOH H 47 447 51 HOH HOH . 
K 6 HOH H 48 448 80 HOH HOH . 
K 6 HOH H 49 449 89 HOH HOH . 
K 6 HOH H 50 450 31 HOH HOH . 
K 6 HOH H 51 451 133 HOH HOH . 
K 6 HOH H 52 452 53 HOH HOH . 
K 6 HOH H 53 453 166 HOH HOH . 
K 6 HOH H 54 454 28 HOH HOH . 
K 6 HOH H 55 455 246 HOH HOH . 
K 6 HOH H 56 456 72 HOH HOH . 
K 6 HOH H 57 457 29 HOH HOH . 
K 6 HOH H 58 458 74 HOH HOH . 
K 6 HOH H 59 459 13 HOH HOH . 
K 6 HOH H 60 460 132 HOH HOH . 
K 6 HOH H 61 461 175 HOH HOH . 
K 6 HOH H 62 462 99 HOH HOH . 
K 6 HOH H 63 463 102 HOH HOH . 
K 6 HOH H 64 464 70 HOH HOH . 
K 6 HOH H 65 465 118 HOH HOH . 
K 6 HOH H 66 466 140 HOH HOH . 
K 6 HOH H 67 467 247 HOH HOH . 
K 6 HOH H 68 468 232 HOH HOH . 
K 6 HOH H 69 469 19 HOH HOH . 
K 6 HOH H 70 470 69 HOH HOH . 
K 6 HOH H 71 471 168 HOH HOH . 
K 6 HOH H 72 472 73 HOH HOH . 
K 6 HOH H 73 473 49 HOH HOH . 
K 6 HOH H 74 474 57 HOH HOH . 
K 6 HOH H 75 475 200 HOH HOH . 
K 6 HOH H 76 476 169 HOH HOH . 
K 6 HOH H 77 477 171 HOH HOH . 
K 6 HOH H 78 478 172 HOH HOH . 
K 6 HOH H 79 479 205 HOH HOH . 
K 6 HOH H 80 480 137 HOH HOH . 
K 6 HOH H 81 481 201 HOH HOH . 
K 6 HOH H 82 482 160 HOH HOH . 
K 6 HOH H 83 483 155 HOH HOH . 
K 6 HOH H 84 484 149 HOH HOH . 
K 6 HOH H 85 485 142 HOH HOH . 
K 6 HOH H 86 486 210 HOH HOH . 
K 6 HOH H 87 487 173 HOH HOH . 
K 6 HOH H 88 488 152 HOH HOH . 
K 6 HOH H 89 489 151 HOH HOH . 
K 6 HOH H 90 490 194 HOH HOH . 
K 6 HOH H 91 491 174 HOH HOH . 
K 6 HOH H 92 492 199 HOH HOH . 
K 6 HOH H 93 493 165 HOH HOH . 
K 6 HOH H 94 494 146 HOH HOH . 
K 6 HOH H 95 495 197 HOH HOH . 
K 6 HOH H 96 496 135 HOH HOH . 
K 6 HOH H 97 497 248 HOH HOH . 
K 6 HOH H 98 498 195 HOH HOH . 
K 6 HOH H 99 499 82 HOH HOH . 
K 6 HOH H 100 500 120 HOH HOH . 
K 6 HOH H 101 501 126 HOH HOH . 
K 6 HOH H 102 502 235 HOH HOH . 
K 6 HOH H 103 503 123 HOH HOH . 
K 6 HOH H 104 504 198 HOH HOH . 
K 6 HOH H 105 505 234 HOH HOH . 
K 6 HOH H 106 506 128 HOH HOH . 
K 6 HOH H 107 507 97 HOH HOH . 
K 6 HOH H 108 508 134 HOH HOH . 
L 6 HOH L 1 401 182 HOH HOH . 
L 6 HOH L 2 402 21 HOH HOH . 
L 6 HOH L 3 403 50 HOH HOH . 
L 6 HOH L 4 404 180 HOH HOH . 
L 6 HOH L 5 405 158 HOH HOH . 
L 6 HOH L 6 406 184 HOH HOH . 
L 6 HOH L 7 407 14 HOH HOH . 
L 6 HOH L 8 408 221 HOH HOH . 
L 6 HOH L 9 409 159 HOH HOH . 
L 6 HOH L 10 410 147 HOH HOH . 
L 6 HOH L 11 411 188 HOH HOH . 
L 6 HOH L 12 412 189 HOH HOH . 
L 6 HOH L 13 413 224 HOH HOH . 
L 6 HOH L 14 414 55 HOH HOH . 
L 6 HOH L 15 415 185 HOH HOH . 
L 6 HOH L 16 416 109 HOH HOH . 
L 6 HOH L 17 417 18 HOH HOH . 
L 6 HOH L 18 418 25 HOH HOH . 
L 6 HOH L 19 419 212 HOH HOH . 
L 6 HOH L 20 420 136 HOH HOH . 
L 6 HOH L 21 421 202 HOH HOH . 
L 6 HOH L 22 422 26 HOH HOH . 
L 6 HOH L 23 423 32 HOH HOH . 
L 6 HOH L 24 424 209 HOH HOH . 
L 6 HOH L 25 425 181 HOH HOH . 
L 6 HOH L 26 426 67 HOH HOH . 
L 6 HOH L 27 427 100 HOH HOH . 
L 6 HOH L 28 428 43 HOH HOH . 
L 6 HOH L 29 429 45 HOH HOH . 
L 6 HOH L 30 430 179 HOH HOH . 
L 6 HOH L 31 431 125 HOH HOH . 
L 6 HOH L 32 432 216 HOH HOH . 
L 6 HOH L 33 433 141 HOH HOH . 
L 6 HOH L 34 434 40 HOH HOH . 
L 6 HOH L 35 435 250 HOH HOH . 
L 6 HOH L 36 436 183 HOH HOH . 
L 6 HOH L 37 437 2 HOH HOH . 
L 6 HOH L 38 438 156 HOH HOH . 
L 6 HOH L 39 439 38 HOH HOH . 
L 6 HOH L 40 440 7 HOH HOH . 
L 6 HOH L 41 441 233 HOH HOH . 
L 6 HOH L 42 442 187 HOH HOH . 
L 6 HOH L 43 443 129 HOH HOH . 
L 6 HOH L 44 444 249 HOH HOH . 
L 6 HOH L 45 445 124 HOH HOH . 
L 6 HOH L 46 446 217 HOH HOH . 
L 6 HOH L 47 447 207 HOH HOH . 
L 6 HOH L 48 448 122 HOH HOH . 
L 6 HOH L 49 449 60 HOH HOH . 
L 6 HOH L 50 450 211 HOH HOH . 
L 6 HOH L 51 451 30 HOH HOH . 
L 6 HOH L 52 452 242 HOH HOH . 
L 6 HOH L 53 453 115 HOH HOH . 
L 6 HOH L 54 454 219 HOH HOH . 
L 6 HOH L 55 455 17 HOH HOH . 
L 6 HOH L 56 456 110 HOH HOH . 
L 6 HOH L 57 457 239 HOH HOH . 
L 6 HOH L 58 458 37 HOH HOH . 
L 6 HOH L 59 459 208 HOH HOH . 
L 6 HOH L 60 460 62 HOH HOH . 
L 6 HOH L 61 461 186 HOH HOH . 
L 6 HOH L 62 462 41 HOH HOH . 
L 6 HOH L 63 463 16 HOH HOH . 
L 6 HOH L 64 464 236 HOH HOH . 
L 6 HOH L 65 465 157 HOH HOH . 
L 6 HOH L 66 466 214 HOH HOH . 
L 6 HOH L 67 467 88 HOH HOH . 
L 6 HOH L 68 468 222 HOH HOH . 
L 6 HOH L 69 469 218 HOH HOH . 
L 6 HOH L 70 470 191 HOH HOH . 
L 6 HOH L 71 471 215 HOH HOH . 
L 6 HOH L 72 472 237 HOH HOH . 
L 6 HOH L 73 473 90 HOH HOH . 
L 6 HOH L 74 474 240 HOH HOH . 
L 6 HOH L 75 475 121 HOH HOH . 
L 6 HOH L 76 476 220 HOH HOH . 
L 6 HOH L 77 477 95 HOH HOH . 
L 6 HOH L 78 478 117 HOH HOH . 
L 6 HOH L 79 479 238 HOH HOH . 
L 6 HOH L 80 480 213 HOH HOH . 
L 6 HOH L 81 481 190 HOH HOH . 
L 6 HOH L 82 482 243 HOH HOH . 
L 6 HOH L 83 483 143 HOH HOH . 
L 6 HOH L 84 484 241 HOH HOH . 
L 6 HOH L 85 485 131 HOH HOH . 
M 6 HOH E 1 701 163 HOH HOH . 
M 6 HOH E 2 702 5 HOH HOH . 
M 6 HOH E 3 703 39 HOH HOH . 
M 6 HOH E 4 704 48 HOH HOH . 
M 6 HOH E 5 705 27 HOH HOH . 
M 6 HOH E 6 706 4 HOH HOH . 
M 6 HOH E 7 707 61 HOH HOH . 
M 6 HOH E 8 708 36 HOH HOH . 
M 6 HOH E 9 709 33 HOH HOH . 
M 6 HOH E 10 710 193 HOH HOH . 
M 6 HOH E 11 711 225 HOH HOH . 
M 6 HOH E 12 712 84 HOH HOH . 
M 6 HOH E 13 713 162 HOH HOH . 
M 6 HOH E 14 714 244 HOH HOH . 
M 6 HOH E 15 715 192 HOH HOH . 
M 6 HOH E 16 716 59 HOH HOH . 
M 6 HOH E 17 717 10 HOH HOH . 
M 6 HOH E 18 718 228 HOH HOH . 
M 6 HOH E 19 719 75 HOH HOH . 
M 6 HOH E 20 720 167 HOH HOH . 
M 6 HOH E 21 721 164 HOH HOH . 
M 6 HOH E 22 722 56 HOH HOH . 
M 6 HOH E 23 723 227 HOH HOH . 
M 6 HOH E 24 724 111 HOH HOH . 
M 6 HOH E 25 725 161 HOH HOH . 
M 6 HOH E 26 726 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -4.592 13.489 47.75 1 66.42 ? C1 GOL 301 H 1 
HETATM 2 O O1 GOL . . . D 4 -4.744 14.627 48.546 1 64.21 ? O1 GOL 301 H 1 
HETATM 3 C C2 GOL . . . D 4 -5.748 13.488 46.714 1 69.35 ? C2 GOL 301 H 1 
HETATM 4 O O2 GOL . . . D 4 -5.755 12.342 45.929 1 70.16 ? O2 GOL 301 H 1 
HETATM 5 C C3 GOL . . . D 4 -7.038 13.626 47.55 1 71.05 ? C3 GOL 301 H 1 
HETATM 6 O O3 GOL . . . D 4 -7.194 14.983 47.818 1 72.32 ? O3 GOL 301 H 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#