data_7L7Y
#
_model_server_result.job_id            p2amlNivVAeOC5sCC1BA8w 
_model_server_result.datetime_utc      '2024-10-19 01:00:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l7y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    7L7Y 
#
_exptl.entry_id    7L7Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7L7Y 
_cell.length_a            97.656 
_cell.length_b            97.656 
_cell.length_c            65.525 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L7Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 328 n n 
C1 H11 MPD sing 329 n n 
C1 H12 MPD sing 330 n n 
C1 H13 MPD sing 331 n n 
C2 O2 MPD sing 332 n n 
C2 CM MPD sing 333 n n 
C2 C3 MPD sing 334 n n 
O2 HO2 MPD sing 335 n n 
CM HM1 MPD sing 336 n n 
CM HM2 MPD sing 337 n n 
CM HM3 MPD sing 338 n n 
C3 C4 MPD sing 339 n n 
C3 H31 MPD sing 340 n n 
C3 H32 MPD sing 341 n n 
C4 O4 MPD sing 342 n n 
C4 C5 MPD sing 343 n n 
C4 H4 MPD sing 344 n n 
O4 HO4 MPD sing 345 n n 
C5 H51 MPD sing 346 n n 
C5 H52 MPD sing 347 n n 
C5 H53 MPD sing 348 n n 
#
_atom_sites.entry_id                     7L7Y 
_atom_sites.fract_transf_matrix[1][1]    0.01024 
_atom_sites.fract_transf_matrix[1][2]    0.005912 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011824 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015261 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UDP AAA 1 301 241 UDP UDP . 
C 3 ACO AAA 1 302 242 ACO ACO . 
D 4 MPD AAA 1 303 1 MPD MPD . 
E 4 MPD AAA 1 304 2 MPD MPD . 
F 5 CL AAA 1 305 1 CL CL . 
G 6 HOH AAA 1 401 184 HOH HOH . 
G 6 HOH AAA 2 402 189 HOH HOH . 
G 6 HOH AAA 3 403 180 HOH HOH . 
G 6 HOH AAA 4 404 187 HOH HOH . 
G 6 HOH AAA 5 405 209 HOH HOH . 
G 6 HOH AAA 6 406 188 HOH HOH . 
G 6 HOH AAA 7 407 203 HOH HOH . 
G 6 HOH AAA 8 408 235 HOH HOH . 
G 6 HOH AAA 9 409 262 HOH HOH . 
G 6 HOH AAA 10 410 99 HOH HOH . 
G 6 HOH AAA 11 411 186 HOH HOH . 
G 6 HOH AAA 12 412 72 HOH HOH . 
G 6 HOH AAA 13 413 95 HOH HOH . 
G 6 HOH AAA 14 414 182 HOH HOH . 
G 6 HOH AAA 15 415 111 HOH HOH . 
G 6 HOH AAA 16 416 208 HOH HOH . 
G 6 HOH AAA 17 417 41 HOH HOH . 
G 6 HOH AAA 18 418 220 HOH HOH . 
G 6 HOH AAA 19 419 130 HOH HOH . 
G 6 HOH AAA 20 420 97 HOH HOH . 
G 6 HOH AAA 21 421 60 HOH HOH . 
G 6 HOH AAA 22 422 19 HOH HOH . 
G 6 HOH AAA 23 423 66 HOH HOH . 
G 6 HOH AAA 24 424 138 HOH HOH . 
G 6 HOH AAA 25 425 28 HOH HOH . 
G 6 HOH AAA 26 426 216 HOH HOH . 
G 6 HOH AAA 27 427 32 HOH HOH . 
G 6 HOH AAA 28 428 92 HOH HOH . 
G 6 HOH AAA 29 429 39 HOH HOH . 
G 6 HOH AAA 30 430 165 HOH HOH . 
G 6 HOH AAA 31 431 59 HOH HOH . 
G 6 HOH AAA 32 432 206 HOH HOH . 
G 6 HOH AAA 33 433 63 HOH HOH . 
G 6 HOH AAA 34 434 225 HOH HOH . 
G 6 HOH AAA 35 435 58 HOH HOH . 
G 6 HOH AAA 36 436 75 HOH HOH . 
G 6 HOH AAA 37 437 204 HOH HOH . 
G 6 HOH AAA 38 438 70 HOH HOH . 
G 6 HOH AAA 39 439 192 HOH HOH . 
G 6 HOH AAA 40 440 150 HOH HOH . 
G 6 HOH AAA 41 441 230 HOH HOH . 
G 6 HOH AAA 42 442 11 HOH HOH . 
G 6 HOH AAA 43 443 102 HOH HOH . 
G 6 HOH AAA 44 444 74 HOH HOH . 
G 6 HOH AAA 45 445 181 HOH HOH . 
G 6 HOH AAA 46 446 53 HOH HOH . 
G 6 HOH AAA 47 447 134 HOH HOH . 
G 6 HOH AAA 48 448 212 HOH HOH . 
G 6 HOH AAA 49 449 80 HOH HOH . 
G 6 HOH AAA 50 450 195 HOH HOH . 
G 6 HOH AAA 51 451 121 HOH HOH . 
G 6 HOH AAA 52 452 177 HOH HOH . 
G 6 HOH AAA 53 453 33 HOH HOH . 
G 6 HOH AAA 54 454 84 HOH HOH . 
G 6 HOH AAA 55 455 88 HOH HOH . 
G 6 HOH AAA 56 456 118 HOH HOH . 
G 6 HOH AAA 57 457 116 HOH HOH . 
G 6 HOH AAA 58 458 157 HOH HOH . 
G 6 HOH AAA 59 459 142 HOH HOH . 
G 6 HOH AAA 60 460 42 HOH HOH . 
G 6 HOH AAA 61 461 251 HOH HOH . 
G 6 HOH AAA 62 462 166 HOH HOH . 
G 6 HOH AAA 63 463 67 HOH HOH . 
G 6 HOH AAA 64 464 34 HOH HOH . 
G 6 HOH AAA 65 465 26 HOH HOH . 
G 6 HOH AAA 66 466 147 HOH HOH . 
G 6 HOH AAA 67 467 86 HOH HOH . 
G 6 HOH AAA 68 468 140 HOH HOH . 
G 6 HOH AAA 69 469 161 HOH HOH . 
G 6 HOH AAA 70 470 172 HOH HOH . 
G 6 HOH AAA 71 471 50 HOH HOH . 
G 6 HOH AAA 72 472 6 HOH HOH . 
G 6 HOH AAA 73 473 22 HOH HOH . 
G 6 HOH AAA 74 474 24 HOH HOH . 
G 6 HOH AAA 75 475 13 HOH HOH . 
G 6 HOH AAA 76 476 241 HOH HOH . 
G 6 HOH AAA 77 477 250 HOH HOH . 
G 6 HOH AAA 78 478 46 HOH HOH . 
G 6 HOH AAA 79 479 163 HOH HOH . 
G 6 HOH AAA 80 480 57 HOH HOH . 
G 6 HOH AAA 81 481 219 HOH HOH . 
G 6 HOH AAA 82 482 12 HOH HOH . 
G 6 HOH AAA 83 483 30 HOH HOH . 
G 6 HOH AAA 84 484 238 HOH HOH . 
G 6 HOH AAA 85 485 15 HOH HOH . 
G 6 HOH AAA 86 486 123 HOH HOH . 
G 6 HOH AAA 87 487 3 HOH HOH . 
G 6 HOH AAA 88 488 55 HOH HOH . 
G 6 HOH AAA 89 489 256 HOH HOH . 
G 6 HOH AAA 90 490 153 HOH HOH . 
G 6 HOH AAA 91 491 18 HOH HOH . 
G 6 HOH AAA 92 492 82 HOH HOH . 
G 6 HOH AAA 93 493 47 HOH HOH . 
G 6 HOH AAA 94 494 25 HOH HOH . 
G 6 HOH AAA 95 495 69 HOH HOH . 
G 6 HOH AAA 96 496 37 HOH HOH . 
G 6 HOH AAA 97 497 257 HOH HOH . 
G 6 HOH AAA 98 498 2 HOH HOH . 
G 6 HOH AAA 99 499 14 HOH HOH . 
G 6 HOH AAA 100 500 112 HOH HOH . 
G 6 HOH AAA 101 501 127 HOH HOH . 
G 6 HOH AAA 102 502 226 HOH HOH . 
G 6 HOH AAA 103 503 7 HOH HOH . 
G 6 HOH AAA 104 504 45 HOH HOH . 
G 6 HOH AAA 105 505 38 HOH HOH . 
G 6 HOH AAA 106 506 65 HOH HOH . 
G 6 HOH AAA 107 507 1 HOH HOH . 
G 6 HOH AAA 108 508 52 HOH HOH . 
G 6 HOH AAA 109 509 17 HOH HOH . 
G 6 HOH AAA 110 510 20 HOH HOH . 
G 6 HOH AAA 111 511 71 HOH HOH . 
G 6 HOH AAA 112 512 106 HOH HOH . 
G 6 HOH AAA 113 513 23 HOH HOH . 
G 6 HOH AAA 114 514 54 HOH HOH . 
G 6 HOH AAA 115 515 98 HOH HOH . 
G 6 HOH AAA 116 516 124 HOH HOH . 
G 6 HOH AAA 117 517 29 HOH HOH . 
G 6 HOH AAA 118 518 56 HOH HOH . 
G 6 HOH AAA 119 519 109 HOH HOH . 
G 6 HOH AAA 120 520 9 HOH HOH . 
G 6 HOH AAA 121 521 221 HOH HOH . 
G 6 HOH AAA 122 522 100 HOH HOH . 
G 6 HOH AAA 123 523 119 HOH HOH . 
G 6 HOH AAA 124 524 64 HOH HOH . 
G 6 HOH AAA 125 525 4 HOH HOH . 
G 6 HOH AAA 126 526 125 HOH HOH . 
G 6 HOH AAA 127 527 205 HOH HOH . 
G 6 HOH AAA 128 528 94 HOH HOH . 
G 6 HOH AAA 129 529 8 HOH HOH . 
G 6 HOH AAA 130 530 252 HOH HOH . 
G 6 HOH AAA 131 531 83 HOH HOH . 
G 6 HOH AAA 132 532 78 HOH HOH . 
G 6 HOH AAA 133 533 196 HOH HOH . 
G 6 HOH AAA 134 534 73 HOH HOH . 
G 6 HOH AAA 135 535 103 HOH HOH . 
G 6 HOH AAA 136 536 210 HOH HOH . 
G 6 HOH AAA 137 537 231 HOH HOH . 
G 6 HOH AAA 138 538 44 HOH HOH . 
G 6 HOH AAA 139 539 222 HOH HOH . 
G 6 HOH AAA 140 540 104 HOH HOH . 
G 6 HOH AAA 141 541 87 HOH HOH . 
G 6 HOH AAA 142 542 27 HOH HOH . 
G 6 HOH AAA 143 543 76 HOH HOH . 
G 6 HOH AAA 144 544 107 HOH HOH . 
G 6 HOH AAA 145 545 48 HOH HOH . 
G 6 HOH AAA 146 546 154 HOH HOH . 
G 6 HOH AAA 147 547 36 HOH HOH . 
G 6 HOH AAA 148 548 248 HOH HOH . 
G 6 HOH AAA 149 549 43 HOH HOH . 
G 6 HOH AAA 150 550 21 HOH HOH . 
G 6 HOH AAA 151 551 85 HOH HOH . 
G 6 HOH AAA 152 552 115 HOH HOH . 
G 6 HOH AAA 153 553 90 HOH HOH . 
G 6 HOH AAA 154 554 101 HOH HOH . 
G 6 HOH AAA 155 555 89 HOH HOH . 
G 6 HOH AAA 156 556 10 HOH HOH . 
G 6 HOH AAA 157 557 160 HOH HOH . 
G 6 HOH AAA 158 558 105 HOH HOH . 
G 6 HOH AAA 159 559 191 HOH HOH . 
G 6 HOH AAA 160 560 62 HOH HOH . 
G 6 HOH AAA 161 561 77 HOH HOH . 
G 6 HOH AAA 162 562 122 HOH HOH . 
G 6 HOH AAA 163 563 35 HOH HOH . 
G 6 HOH AAA 164 564 259 HOH HOH . 
G 6 HOH AAA 165 565 213 HOH HOH . 
G 6 HOH AAA 166 566 132 HOH HOH . 
G 6 HOH AAA 167 567 200 HOH HOH . 
G 6 HOH AAA 168 568 149 HOH HOH . 
G 6 HOH AAA 169 569 126 HOH HOH . 
G 6 HOH AAA 170 570 128 HOH HOH . 
G 6 HOH AAA 171 571 31 HOH HOH . 
G 6 HOH AAA 172 572 190 HOH HOH . 
G 6 HOH AAA 173 573 96 HOH HOH . 
G 6 HOH AAA 174 574 199 HOH HOH . 
G 6 HOH AAA 175 575 79 HOH HOH . 
G 6 HOH AAA 176 576 68 HOH HOH . 
G 6 HOH AAA 177 577 236 HOH HOH . 
G 6 HOH AAA 178 578 144 HOH HOH . 
G 6 HOH AAA 179 579 135 HOH HOH . 
G 6 HOH AAA 180 580 159 HOH HOH . 
G 6 HOH AAA 181 581 61 HOH HOH . 
G 6 HOH AAA 182 582 239 HOH HOH . 
G 6 HOH AAA 183 583 173 HOH HOH . 
G 6 HOH AAA 184 584 201 HOH HOH . 
G 6 HOH AAA 185 585 254 HOH HOH . 
G 6 HOH AAA 186 586 202 HOH HOH . 
G 6 HOH AAA 187 587 218 HOH HOH . 
G 6 HOH AAA 188 588 16 HOH HOH . 
G 6 HOH AAA 189 589 207 HOH HOH . 
G 6 HOH AAA 190 590 215 HOH HOH . 
G 6 HOH AAA 191 591 197 HOH HOH . 
G 6 HOH AAA 192 592 211 HOH HOH . 
G 6 HOH AAA 193 593 114 HOH HOH . 
G 6 HOH AAA 194 594 193 HOH HOH . 
G 6 HOH AAA 195 595 178 HOH HOH . 
G 6 HOH AAA 196 596 240 HOH HOH . 
G 6 HOH AAA 197 597 224 HOH HOH . 
G 6 HOH AAA 198 598 243 HOH HOH . 
G 6 HOH AAA 199 599 247 HOH HOH . 
G 6 HOH AAA 200 600 162 HOH HOH . 
G 6 HOH AAA 201 601 244 HOH HOH . 
G 6 HOH AAA 202 602 40 HOH HOH . 
G 6 HOH AAA 203 603 117 HOH HOH . 
G 6 HOH AAA 204 604 133 HOH HOH . 
G 6 HOH AAA 205 605 49 HOH HOH . 
G 6 HOH AAA 206 606 261 HOH HOH . 
G 6 HOH AAA 207 607 171 HOH HOH . 
G 6 HOH AAA 208 608 214 HOH HOH . 
G 6 HOH AAA 209 609 156 HOH HOH . 
G 6 HOH AAA 210 610 245 HOH HOH . 
G 6 HOH AAA 211 611 93 HOH HOH . 
G 6 HOH AAA 212 612 145 HOH HOH . 
G 6 HOH AAA 213 613 51 HOH HOH . 
G 6 HOH AAA 214 614 81 HOH HOH . 
G 6 HOH AAA 215 615 143 HOH HOH . 
G 6 HOH AAA 216 616 258 HOH HOH . 
G 6 HOH AAA 217 617 249 HOH HOH . 
G 6 HOH AAA 218 618 234 HOH HOH . 
G 6 HOH AAA 219 619 217 HOH HOH . 
G 6 HOH AAA 220 620 167 HOH HOH . 
G 6 HOH AAA 221 621 120 HOH HOH . 
G 6 HOH AAA 222 622 131 HOH HOH . 
G 6 HOH AAA 223 623 141 HOH HOH . 
G 6 HOH AAA 224 624 175 HOH HOH . 
G 6 HOH AAA 225 625 246 HOH HOH . 
G 6 HOH AAA 226 626 229 HOH HOH . 
G 6 HOH AAA 227 627 91 HOH HOH . 
G 6 HOH AAA 228 628 198 HOH HOH . 
G 6 HOH AAA 229 629 228 HOH HOH . 
G 6 HOH AAA 230 630 148 HOH HOH . 
G 6 HOH AAA 231 631 129 HOH HOH . 
G 6 HOH AAA 232 632 227 HOH HOH . 
G 6 HOH AAA 233 633 237 HOH HOH . 
G 6 HOH AAA 234 634 260 HOH HOH . 
G 6 HOH AAA 235 635 170 HOH HOH . 
G 6 HOH AAA 236 636 242 HOH HOH . 
G 6 HOH AAA 237 637 233 HOH HOH . 
G 6 HOH AAA 238 638 108 HOH HOH . 
G 6 HOH AAA 239 639 164 HOH HOH . 
G 6 HOH AAA 240 640 223 HOH HOH . 
G 6 HOH AAA 241 641 113 HOH HOH . 
G 6 HOH AAA 242 642 176 HOH HOH . 
G 6 HOH AAA 243 643 255 HOH HOH . 
G 6 HOH AAA 244 644 194 HOH HOH . 
G 6 HOH AAA 245 645 232 HOH HOH . 
G 6 HOH AAA 246 646 146 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . E 4 1.094 0.348 8.18 0.33 16.84 ? C1 MPD 304 AAA 1 
HETATM 2 C C2 MPD . . . E 4 0.043 -0.035 9.214 0.33 17.09 ? C2 MPD 304 AAA 1 
HETATM 3 O O2 MPD . . . E 4 -0.163 -1.454 9.091 0.33 19.53 ? O2 MPD 304 AAA 1 
HETATM 4 C CM MPD . . . E 4 -1.286 0.645 8.911 0.33 17.94 ? CM MPD 304 AAA 1 
HETATM 5 C C3 MPD . . . E 4 0.536 0.271 10.637 0.33 15.82 ? C3 MPD 304 AAA 1 
HETATM 6 C C4 MPD . . . E 4 -0.108 -0.538 11.757 0.33 14.04 ? C4 MPD 304 AAA 1 
HETATM 7 O O4 MPD . . . E 4 0.484 -1.834 11.817 0.33 13.44 ? O4 MPD 304 AAA 1 
HETATM 8 C C5 MPD . . . E 4 -0.007 0.069 13.126 0.33 13.35 ? C5 MPD 304 AAA 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#