data_7L7Z # _model_server_result.job_id hCxaTRiGDGDf0xA5LgksbQ _model_server_result.datetime_utc '2024-11-25 11:01:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 7L7Z # _exptl.entry_id 7L7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7L7Z _cell.length_a 96.898 _cell.length_b 96.898 _cell.length_c 66.63 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 323 n n C1 H11 MPD sing 324 n n C1 H12 MPD sing 325 n n C1 H13 MPD sing 326 n n C2 O2 MPD sing 327 n n C2 CM MPD sing 328 n n C2 C3 MPD sing 329 n n O2 HO2 MPD sing 330 n n CM HM1 MPD sing 331 n n CM HM2 MPD sing 332 n n CM HM3 MPD sing 333 n n C3 C4 MPD sing 334 n n C3 H31 MPD sing 335 n n C3 H32 MPD sing 336 n n C4 O4 MPD sing 337 n n C4 C5 MPD sing 338 n n C4 H4 MPD sing 339 n n O4 HO4 MPD sing 340 n n C5 H51 MPD sing 341 n n C5 H52 MPD sing 342 n n C5 H53 MPD sing 343 n n # _atom_sites.entry_id 7L7Z _atom_sites.fract_transf_matrix[1][1] 0.01032 _atom_sites.fract_transf_matrix[1][2] 0.005958 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA AAA 1 301 242 COA COA . C 3 XQA AAA 1 302 243 XQA UDB . D 4 CL AAA 1 303 1 CL CL . E 5 MPD AAA 1 304 1 MPD MPD . F 5 MPD AAA 1 305 2 MPD MPD . G 5 MPD AAA 1 306 3 MPD MPD . H 5 MPD AAA 1 307 4 MPD MPD . I 5 MPD AAA 1 308 5 MPD MPD . J 6 HOH AAA 1 401 190 HOH HOH . J 6 HOH AAA 2 402 175 HOH HOH . J 6 HOH AAA 3 403 166 HOH HOH . J 6 HOH AAA 4 404 271 HOH HOH . J 6 HOH AAA 5 405 227 HOH HOH . J 6 HOH AAA 6 406 199 HOH HOH . J 6 HOH AAA 7 407 91 HOH HOH . J 6 HOH AAA 8 408 109 HOH HOH . J 6 HOH AAA 9 409 218 HOH HOH . J 6 HOH AAA 10 410 28 HOH HOH . J 6 HOH AAA 11 411 72 HOH HOH . J 6 HOH AAA 12 412 203 HOH HOH . J 6 HOH AAA 13 413 200 HOH HOH . J 6 HOH AAA 14 414 73 HOH HOH . J 6 HOH AAA 15 415 262 HOH HOH . J 6 HOH AAA 16 416 76 HOH HOH . J 6 HOH AAA 17 417 266 HOH HOH . J 6 HOH AAA 18 418 15 HOH HOH . J 6 HOH AAA 19 419 68 HOH HOH . J 6 HOH AAA 20 420 85 HOH HOH . J 6 HOH AAA 21 421 206 HOH HOH . J 6 HOH AAA 22 422 80 HOH HOH . J 6 HOH AAA 23 423 50 HOH HOH . J 6 HOH AAA 24 424 44 HOH HOH . J 6 HOH AAA 25 425 215 HOH HOH . J 6 HOH AAA 26 426 55 HOH HOH . J 6 HOH AAA 27 427 59 HOH HOH . J 6 HOH AAA 28 428 96 HOH HOH . J 6 HOH AAA 29 429 133 HOH HOH . J 6 HOH AAA 30 430 54 HOH HOH . J 6 HOH AAA 31 431 7 HOH HOH . J 6 HOH AAA 32 432 250 HOH HOH . J 6 HOH AAA 33 433 10 HOH HOH . J 6 HOH AAA 34 434 140 HOH HOH . J 6 HOH AAA 35 435 20 HOH HOH . J 6 HOH AAA 36 436 37 HOH HOH . J 6 HOH AAA 37 437 22 HOH HOH . J 6 HOH AAA 38 438 209 HOH HOH . J 6 HOH AAA 39 439 63 HOH HOH . J 6 HOH AAA 40 440 252 HOH HOH . J 6 HOH AAA 41 441 66 HOH HOH . J 6 HOH AAA 42 442 231 HOH HOH . J 6 HOH AAA 43 443 214 HOH HOH . J 6 HOH AAA 44 444 251 HOH HOH . J 6 HOH AAA 45 445 40 HOH HOH . J 6 HOH AAA 46 446 42 HOH HOH . J 6 HOH AAA 47 447 14 HOH HOH . J 6 HOH AAA 48 448 244 HOH HOH . J 6 HOH AAA 49 449 32 HOH HOH . J 6 HOH AAA 50 450 51 HOH HOH . J 6 HOH AAA 51 451 143 HOH HOH . J 6 HOH AAA 52 452 2 HOH HOH . J 6 HOH AAA 53 453 82 HOH HOH . J 6 HOH AAA 54 454 187 HOH HOH . J 6 HOH AAA 55 455 225 HOH HOH . J 6 HOH AAA 56 456 56 HOH HOH . J 6 HOH AAA 57 457 9 HOH HOH . J 6 HOH AAA 58 458 232 HOH HOH . J 6 HOH AAA 59 459 289 HOH HOH . J 6 HOH AAA 60 460 8 HOH HOH . J 6 HOH AAA 61 461 194 HOH HOH . J 6 HOH AAA 62 462 89 HOH HOH . J 6 HOH AAA 63 463 295 HOH HOH . J 6 HOH AAA 64 464 30 HOH HOH . J 6 HOH AAA 65 465 98 HOH HOH . J 6 HOH AAA 66 466 273 HOH HOH . J 6 HOH AAA 67 467 41 HOH HOH . J 6 HOH AAA 68 468 245 HOH HOH . J 6 HOH AAA 69 469 173 HOH HOH . J 6 HOH AAA 70 470 64 HOH HOH . J 6 HOH AAA 71 471 39 HOH HOH . J 6 HOH AAA 72 472 43 HOH HOH . J 6 HOH AAA 73 473 142 HOH HOH . J 6 HOH AAA 74 474 222 HOH HOH . J 6 HOH AAA 75 475 61 HOH HOH . J 6 HOH AAA 76 476 105 HOH HOH . J 6 HOH AAA 77 477 24 HOH HOH . J 6 HOH AAA 78 478 248 HOH HOH . J 6 HOH AAA 79 479 272 HOH HOH . J 6 HOH AAA 80 480 229 HOH HOH . J 6 HOH AAA 81 481 283 HOH HOH . J 6 HOH AAA 82 482 246 HOH HOH . J 6 HOH AAA 83 483 17 HOH HOH . J 6 HOH AAA 84 484 26 HOH HOH . J 6 HOH AAA 85 485 29 HOH HOH . J 6 HOH AAA 86 486 226 HOH HOH . J 6 HOH AAA 87 487 3 HOH HOH . J 6 HOH AAA 88 488 47 HOH HOH . J 6 HOH AAA 89 489 107 HOH HOH . J 6 HOH AAA 90 490 292 HOH HOH . J 6 HOH AAA 91 491 265 HOH HOH . J 6 HOH AAA 92 492 274 HOH HOH . J 6 HOH AAA 93 493 4 HOH HOH . J 6 HOH AAA 94 494 95 HOH HOH . J 6 HOH AAA 95 495 86 HOH HOH . J 6 HOH AAA 96 496 5 HOH HOH . J 6 HOH AAA 97 497 48 HOH HOH . J 6 HOH AAA 98 498 287 HOH HOH . J 6 HOH AAA 99 499 288 HOH HOH . J 6 HOH AAA 100 500 45 HOH HOH . J 6 HOH AAA 101 501 1 HOH HOH . J 6 HOH AAA 102 502 158 HOH HOH . J 6 HOH AAA 103 503 127 HOH HOH . J 6 HOH AAA 104 504 46 HOH HOH . J 6 HOH AAA 105 505 230 HOH HOH . J 6 HOH AAA 106 506 152 HOH HOH . J 6 HOH AAA 107 507 269 HOH HOH . J 6 HOH AAA 108 508 99 HOH HOH . J 6 HOH AAA 109 509 192 HOH HOH . J 6 HOH AAA 110 510 36 HOH HOH . J 6 HOH AAA 111 511 223 HOH HOH . J 6 HOH AAA 112 512 276 HOH HOH . J 6 HOH AAA 113 513 12 HOH HOH . J 6 HOH AAA 114 514 290 HOH HOH . J 6 HOH AAA 115 515 130 HOH HOH . J 6 HOH AAA 116 516 31 HOH HOH . J 6 HOH AAA 117 517 237 HOH HOH . J 6 HOH AAA 118 518 119 HOH HOH . J 6 HOH AAA 119 519 210 HOH HOH . J 6 HOH AAA 120 520 23 HOH HOH . J 6 HOH AAA 121 521 221 HOH HOH . J 6 HOH AAA 122 522 27 HOH HOH . J 6 HOH AAA 123 523 106 HOH HOH . J 6 HOH AAA 124 524 156 HOH HOH . J 6 HOH AAA 125 525 58 HOH HOH . J 6 HOH AAA 126 526 247 HOH HOH . J 6 HOH AAA 127 527 16 HOH HOH . J 6 HOH AAA 128 528 197 HOH HOH . J 6 HOH AAA 129 529 38 HOH HOH . J 6 HOH AAA 130 530 212 HOH HOH . J 6 HOH AAA 131 531 102 HOH HOH . J 6 HOH AAA 132 532 60 HOH HOH . J 6 HOH AAA 133 533 135 HOH HOH . J 6 HOH AAA 134 534 92 HOH HOH . J 6 HOH AAA 135 535 282 HOH HOH . J 6 HOH AAA 136 536 94 HOH HOH . J 6 HOH AAA 137 537 13 HOH HOH . J 6 HOH AAA 138 538 154 HOH HOH . J 6 HOH AAA 139 539 240 HOH HOH . J 6 HOH AAA 140 540 285 HOH HOH . J 6 HOH AAA 141 541 78 HOH HOH . J 6 HOH AAA 142 542 93 HOH HOH . J 6 HOH AAA 143 543 131 HOH HOH . J 6 HOH AAA 144 544 18 HOH HOH . J 6 HOH AAA 145 545 81 HOH HOH . J 6 HOH AAA 146 546 33 HOH HOH . J 6 HOH AAA 147 547 219 HOH HOH . J 6 HOH AAA 148 548 69 HOH HOH . J 6 HOH AAA 149 549 57 HOH HOH . J 6 HOH AAA 150 550 213 HOH HOH . J 6 HOH AAA 151 551 11 HOH HOH . J 6 HOH AAA 152 552 139 HOH HOH . J 6 HOH AAA 153 553 120 HOH HOH . J 6 HOH AAA 154 554 87 HOH HOH . J 6 HOH AAA 155 555 161 HOH HOH . J 6 HOH AAA 156 556 150 HOH HOH . J 6 HOH AAA 157 557 100 HOH HOH . J 6 HOH AAA 158 558 115 HOH HOH . J 6 HOH AAA 159 559 277 HOH HOH . J 6 HOH AAA 160 560 25 HOH HOH . J 6 HOH AAA 161 561 171 HOH HOH . J 6 HOH AAA 162 562 211 HOH HOH . J 6 HOH AAA 163 563 238 HOH HOH . J 6 HOH AAA 164 564 297 HOH HOH . J 6 HOH AAA 165 565 75 HOH HOH . J 6 HOH AAA 166 566 216 HOH HOH . J 6 HOH AAA 167 567 65 HOH HOH . J 6 HOH AAA 168 568 52 HOH HOH . J 6 HOH AAA 169 569 97 HOH HOH . J 6 HOH AAA 170 570 62 HOH HOH . J 6 HOH AAA 171 571 191 HOH HOH . J 6 HOH AAA 172 572 157 HOH HOH . J 6 HOH AAA 173 573 53 HOH HOH . J 6 HOH AAA 174 574 293 HOH HOH . J 6 HOH AAA 175 575 180 HOH HOH . J 6 HOH AAA 176 576 126 HOH HOH . J 6 HOH AAA 177 577 242 HOH HOH . J 6 HOH AAA 178 578 35 HOH HOH . J 6 HOH AAA 179 579 236 HOH HOH . J 6 HOH AAA 180 580 220 HOH HOH . J 6 HOH AAA 181 581 195 HOH HOH . J 6 HOH AAA 182 582 83 HOH HOH . J 6 HOH AAA 183 583 234 HOH HOH . J 6 HOH AAA 184 584 217 HOH HOH . J 6 HOH AAA 185 585 243 HOH HOH . J 6 HOH AAA 186 586 118 HOH HOH . J 6 HOH AAA 187 587 134 HOH HOH . J 6 HOH AAA 188 588 291 HOH HOH . J 6 HOH AAA 189 589 138 HOH HOH . J 6 HOH AAA 190 590 235 HOH HOH . J 6 HOH AAA 191 591 205 HOH HOH . J 6 HOH AAA 192 592 70 HOH HOH . J 6 HOH AAA 193 593 148 HOH HOH . J 6 HOH AAA 194 594 116 HOH HOH . J 6 HOH AAA 195 595 169 HOH HOH . J 6 HOH AAA 196 596 182 HOH HOH . J 6 HOH AAA 197 597 124 HOH HOH . J 6 HOH AAA 198 598 294 HOH HOH . J 6 HOH AAA 199 599 280 HOH HOH . J 6 HOH AAA 200 600 77 HOH HOH . J 6 HOH AAA 201 601 141 HOH HOH . J 6 HOH AAA 202 602 84 HOH HOH . J 6 HOH AAA 203 603 71 HOH HOH . J 6 HOH AAA 204 604 159 HOH HOH . J 6 HOH AAA 205 605 249 HOH HOH . J 6 HOH AAA 206 606 162 HOH HOH . J 6 HOH AAA 207 607 122 HOH HOH . J 6 HOH AAA 208 608 263 HOH HOH . J 6 HOH AAA 209 609 179 HOH HOH . J 6 HOH AAA 210 610 281 HOH HOH . J 6 HOH AAA 211 611 121 HOH HOH . J 6 HOH AAA 212 612 136 HOH HOH . J 6 HOH AAA 213 613 168 HOH HOH . J 6 HOH AAA 214 614 183 HOH HOH . J 6 HOH AAA 215 615 268 HOH HOH . J 6 HOH AAA 216 616 114 HOH HOH . J 6 HOH AAA 217 617 261 HOH HOH . J 6 HOH AAA 218 618 101 HOH HOH . J 6 HOH AAA 219 619 181 HOH HOH . J 6 HOH AAA 220 620 267 HOH HOH . J 6 HOH AAA 221 621 284 HOH HOH . J 6 HOH AAA 222 622 264 HOH HOH . J 6 HOH AAA 223 623 296 HOH HOH . J 6 HOH AAA 224 624 278 HOH HOH . J 6 HOH AAA 225 625 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 5 1.323 0.687 8.404 0.33 25.13 ? C1 MPD 307 AAA 1 HETATM 2 C C2 MPD . . . H 5 0.282 0.152 9.376 0.33 26.1 ? C2 MPD 307 AAA 1 HETATM 3 O O2 MPD . . . H 5 -0.153 -1.121 8.862 0.33 25.88 ? O2 MPD 307 AAA 1 HETATM 4 C CM MPD . . . H 5 -0.932 1.064 9.429 0.33 26.02 ? CM MPD 307 AAA 1 HETATM 5 C C3 MPD . . . H 5 0.865 -0.058 10.776 0.33 24.98 ? C3 MPD 307 AAA 1 HETATM 6 C C4 MPD . . . H 5 -0.159 -0.497 11.794 0.33 23.52 ? C4 MPD 307 AAA 1 HETATM 7 O O4 MPD . . . H 5 -0.134 -1.915 11.89 0.33 24.06 ? O4 MPD 307 AAA 1 HETATM 8 C C5 MPD . . . H 5 0.029 0.07 13.17 0.33 23.2 ? C5 MPD 307 AAA 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #