data_7L81 # _model_server_result.job_id slBBB-rzv7N1ii6b-EejNA _model_server_result.datetime_utc '2024-10-19 01:42:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 7L81 # _exptl.entry_id 7L81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7L81 _cell.length_a 97.05 _cell.length_b 97.05 _cell.length_c 66.032 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 323 n n C1 H11 MPD sing 324 n n C1 H12 MPD sing 325 n n C1 H13 MPD sing 326 n n C2 O2 MPD sing 327 n n C2 CM MPD sing 328 n n C2 C3 MPD sing 329 n n O2 HO2 MPD sing 330 n n CM HM1 MPD sing 331 n n CM HM2 MPD sing 332 n n CM HM3 MPD sing 333 n n C3 C4 MPD sing 334 n n C3 H31 MPD sing 335 n n C3 H32 MPD sing 336 n n C4 O4 MPD sing 337 n n C4 C5 MPD sing 338 n n C4 H4 MPD sing 339 n n O4 HO4 MPD sing 340 n n C5 H51 MPD sing 341 n n C5 H52 MPD sing 342 n n C5 H53 MPD sing 343 n n # _atom_sites.entry_id 7L81 _atom_sites.fract_transf_matrix[1][1] 0.010304 _atom_sites.fract_transf_matrix[1][2] 0.005949 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UD4 AAA 1 301 301 UD4 UD4 . C 3 COA AAA 1 302 302 COA COA . D 4 CL AAA 1 303 1 CL CL . E 5 MPD AAA 1 304 1 MPD MPD . F 5 MPD AAA 1 305 2 MPD MPD . G 5 MPD AAA 1 306 3 MPD MPD . H 5 MPD AAA 1 307 4 MPD MPD . I 5 MPD AAA 1 308 5 MPD MPD . J 6 HOH AAA 1 401 142 HOH HOH . J 6 HOH AAA 2 402 271 HOH HOH . J 6 HOH AAA 3 403 90 HOH HOH . J 6 HOH AAA 4 404 175 HOH HOH . J 6 HOH AAA 5 405 185 HOH HOH . J 6 HOH AAA 6 406 298 HOH HOH . J 6 HOH AAA 7 407 199 HOH HOH . J 6 HOH AAA 8 408 139 HOH HOH . J 6 HOH AAA 9 409 91 HOH HOH . J 6 HOH AAA 10 410 200 HOH HOH . J 6 HOH AAA 11 411 296 HOH HOH . J 6 HOH AAA 12 412 28 HOH HOH . J 6 HOH AAA 13 413 88 HOH HOH . J 6 HOH AAA 14 414 85 HOH HOH . J 6 HOH AAA 15 415 130 HOH HOH . J 6 HOH AAA 16 416 228 HOH HOH . J 6 HOH AAA 17 417 253 HOH HOH . J 6 HOH AAA 18 418 266 HOH HOH . J 6 HOH AAA 19 419 229 HOH HOH . J 6 HOH AAA 20 420 80 HOH HOH . J 6 HOH AAA 21 421 46 HOH HOH . J 6 HOH AAA 22 422 295 HOH HOH . J 6 HOH AAA 23 423 73 HOH HOH . J 6 HOH AAA 24 424 37 HOH HOH . J 6 HOH AAA 25 425 68 HOH HOH . J 6 HOH AAA 26 426 215 HOH HOH . J 6 HOH AAA 27 427 50 HOH HOH . J 6 HOH AAA 28 428 227 HOH HOH . J 6 HOH AAA 29 429 133 HOH HOH . J 6 HOH AAA 30 430 250 HOH HOH . J 6 HOH AAA 31 431 72 HOH HOH . J 6 HOH AAA 32 432 76 HOH HOH . J 6 HOH AAA 33 433 248 HOH HOH . J 6 HOH AAA 34 434 63 HOH HOH . J 6 HOH AAA 35 435 143 HOH HOH . J 6 HOH AAA 36 436 96 HOH HOH . J 6 HOH AAA 37 437 54 HOH HOH . J 6 HOH AAA 38 438 230 HOH HOH . J 6 HOH AAA 39 439 206 HOH HOH . J 6 HOH AAA 40 440 7 HOH HOH . J 6 HOH AAA 41 441 188 HOH HOH . J 6 HOH AAA 42 442 44 HOH HOH . J 6 HOH AAA 43 443 285 HOH HOH . J 6 HOH AAA 44 444 67 HOH HOH . J 6 HOH AAA 45 445 173 HOH HOH . J 6 HOH AAA 46 446 66 HOH HOH . J 6 HOH AAA 47 447 232 HOH HOH . J 6 HOH AAA 48 448 56 HOH HOH . J 6 HOH AAA 49 449 64 HOH HOH . J 6 HOH AAA 50 450 190 HOH HOH . J 6 HOH AAA 51 451 10 HOH HOH . J 6 HOH AAA 52 452 203 HOH HOH . J 6 HOH AAA 53 453 209 HOH HOH . J 6 HOH AAA 54 454 187 HOH HOH . J 6 HOH AAA 55 455 171 HOH HOH . J 6 HOH AAA 56 456 252 HOH HOH . J 6 HOH AAA 57 457 32 HOH HOH . J 6 HOH AAA 58 458 20 HOH HOH . J 6 HOH AAA 59 459 288 HOH HOH . J 6 HOH AAA 60 460 22 HOH HOH . J 6 HOH AAA 61 461 15 HOH HOH . J 6 HOH AAA 62 462 127 HOH HOH . J 6 HOH AAA 63 463 282 HOH HOH . J 6 HOH AAA 64 464 251 HOH HOH . J 6 HOH AAA 65 465 14 HOH HOH . J 6 HOH AAA 66 466 289 HOH HOH . J 6 HOH AAA 67 467 59 HOH HOH . J 6 HOH AAA 68 468 107 HOH HOH . J 6 HOH AAA 69 469 140 HOH HOH . J 6 HOH AAA 70 470 105 HOH HOH . J 6 HOH AAA 71 471 51 HOH HOH . J 6 HOH AAA 72 472 39 HOH HOH . J 6 HOH AAA 73 473 245 HOH HOH . J 6 HOH AAA 74 474 262 HOH HOH . J 6 HOH AAA 75 475 214 HOH HOH . J 6 HOH AAA 76 476 204 HOH HOH . J 6 HOH AAA 77 477 42 HOH HOH . J 6 HOH AAA 78 478 86 HOH HOH . J 6 HOH AAA 79 479 43 HOH HOH . J 6 HOH AAA 80 480 265 HOH HOH . J 6 HOH AAA 81 481 17 HOH HOH . J 6 HOH AAA 82 482 40 HOH HOH . J 6 HOH AAA 83 483 3 HOH HOH . J 6 HOH AAA 84 484 98 HOH HOH . J 6 HOH AAA 85 485 89 HOH HOH . J 6 HOH AAA 86 486 30 HOH HOH . J 6 HOH AAA 87 487 283 HOH HOH . J 6 HOH AAA 88 488 2 HOH HOH . J 6 HOH AAA 89 489 244 HOH HOH . J 6 HOH AAA 90 490 8 HOH HOH . J 6 HOH AAA 91 491 55 HOH HOH . J 6 HOH AAA 92 492 246 HOH HOH . J 6 HOH AAA 93 493 158 HOH HOH . J 6 HOH AAA 94 494 82 HOH HOH . J 6 HOH AAA 95 495 61 HOH HOH . J 6 HOH AAA 96 496 41 HOH HOH . J 6 HOH AAA 97 497 47 HOH HOH . J 6 HOH AAA 98 498 9 HOH HOH . J 6 HOH AAA 99 499 29 HOH HOH . J 6 HOH AAA 100 500 226 HOH HOH . J 6 HOH AAA 101 501 26 HOH HOH . J 6 HOH AAA 102 502 279 HOH HOH . J 6 HOH AAA 103 503 58 HOH HOH . J 6 HOH AAA 104 504 218 HOH HOH . J 6 HOH AAA 105 505 273 HOH HOH . J 6 HOH AAA 106 506 221 HOH HOH . J 6 HOH AAA 107 507 166 HOH HOH . J 6 HOH AAA 108 508 119 HOH HOH . J 6 HOH AAA 109 509 12 HOH HOH . J 6 HOH AAA 110 510 274 HOH HOH . J 6 HOH AAA 111 511 1 HOH HOH . J 6 HOH AAA 112 512 239 HOH HOH . J 6 HOH AAA 113 513 275 HOH HOH . J 6 HOH AAA 114 514 23 HOH HOH . J 6 HOH AAA 115 515 152 HOH HOH . J 6 HOH AAA 116 516 106 HOH HOH . J 6 HOH AAA 117 517 95 HOH HOH . J 6 HOH AAA 118 518 154 HOH HOH . J 6 HOH AAA 119 519 178 HOH HOH . J 6 HOH AAA 120 520 210 HOH HOH . J 6 HOH AAA 121 521 192 HOH HOH . J 6 HOH AAA 122 522 4 HOH HOH . J 6 HOH AAA 123 523 5 HOH HOH . J 6 HOH AAA 124 524 219 HOH HOH . J 6 HOH AAA 125 525 237 HOH HOH . J 6 HOH AAA 126 526 197 HOH HOH . J 6 HOH AAA 127 527 48 HOH HOH . J 6 HOH AAA 128 528 24 HOH HOH . J 6 HOH AAA 129 529 94 HOH HOH . J 6 HOH AAA 130 530 198 HOH HOH . J 6 HOH AAA 131 531 231 HOH HOH . J 6 HOH AAA 132 532 36 HOH HOH . J 6 HOH AAA 133 533 287 HOH HOH . J 6 HOH AAA 134 534 74 HOH HOH . J 6 HOH AAA 135 535 16 HOH HOH . J 6 HOH AAA 136 536 69 HOH HOH . J 6 HOH AAA 137 537 272 HOH HOH . J 6 HOH AAA 138 538 194 HOH HOH . J 6 HOH AAA 139 539 18 HOH HOH . J 6 HOH AAA 140 540 57 HOH HOH . J 6 HOH AAA 141 541 135 HOH HOH . J 6 HOH AAA 142 542 156 HOH HOH . J 6 HOH AAA 143 543 31 HOH HOH . J 6 HOH AAA 144 544 78 HOH HOH . J 6 HOH AAA 145 545 11 HOH HOH . J 6 HOH AAA 146 546 13 HOH HOH . J 6 HOH AAA 147 547 70 HOH HOH . J 6 HOH AAA 148 548 225 HOH HOH . J 6 HOH AAA 149 549 216 HOH HOH . J 6 HOH AAA 150 550 277 HOH HOH . J 6 HOH AAA 151 551 111 HOH HOH . J 6 HOH AAA 152 552 60 HOH HOH . J 6 HOH AAA 153 553 27 HOH HOH . J 6 HOH AAA 154 554 33 HOH HOH . J 6 HOH AAA 155 555 87 HOH HOH . J 6 HOH AAA 156 556 223 HOH HOH . J 6 HOH AAA 157 557 38 HOH HOH . J 6 HOH AAA 158 558 270 HOH HOH . J 6 HOH AAA 159 559 99 HOH HOH . J 6 HOH AAA 160 560 81 HOH HOH . J 6 HOH AAA 161 561 269 HOH HOH . J 6 HOH AAA 162 562 247 HOH HOH . J 6 HOH AAA 163 563 102 HOH HOH . J 6 HOH AAA 164 564 238 HOH HOH . J 6 HOH AAA 165 565 292 HOH HOH . J 6 HOH AAA 166 566 161 HOH HOH . J 6 HOH AAA 167 567 75 HOH HOH . J 6 HOH AAA 168 568 293 HOH HOH . J 6 HOH AAA 169 569 213 HOH HOH . J 6 HOH AAA 170 570 131 HOH HOH . J 6 HOH AAA 171 571 45 HOH HOH . J 6 HOH AAA 172 572 92 HOH HOH . J 6 HOH AAA 173 573 100 HOH HOH . J 6 HOH AAA 174 574 52 HOH HOH . J 6 HOH AAA 175 575 222 HOH HOH . J 6 HOH AAA 176 576 120 HOH HOH . J 6 HOH AAA 177 577 93 HOH HOH . J 6 HOH AAA 178 578 115 HOH HOH . J 6 HOH AAA 179 579 62 HOH HOH . J 6 HOH AAA 180 580 224 HOH HOH . J 6 HOH AAA 181 581 126 HOH HOH . J 6 HOH AAA 182 582 150 HOH HOH . J 6 HOH AAA 183 583 25 HOH HOH . J 6 HOH AAA 184 584 65 HOH HOH . J 6 HOH AAA 185 585 300 HOH HOH . J 6 HOH AAA 186 586 211 HOH HOH . J 6 HOH AAA 187 587 212 HOH HOH . J 6 HOH AAA 188 588 97 HOH HOH . J 6 HOH AAA 189 589 276 HOH HOH . J 6 HOH AAA 190 590 207 HOH HOH . J 6 HOH AAA 191 591 53 HOH HOH . J 6 HOH AAA 192 592 240 HOH HOH . J 6 HOH AAA 193 593 157 HOH HOH . J 6 HOH AAA 194 594 195 HOH HOH . J 6 HOH AAA 195 595 220 HOH HOH . J 6 HOH AAA 196 596 286 HOH HOH . J 6 HOH AAA 197 597 234 HOH HOH . J 6 HOH AAA 198 598 180 HOH HOH . J 6 HOH AAA 199 599 294 HOH HOH . J 6 HOH AAA 200 600 35 HOH HOH . J 6 HOH AAA 201 601 242 HOH HOH . J 6 HOH AAA 202 602 83 HOH HOH . J 6 HOH AAA 203 603 191 HOH HOH . J 6 HOH AAA 204 604 243 HOH HOH . J 6 HOH AAA 205 605 297 HOH HOH . J 6 HOH AAA 206 606 205 HOH HOH . J 6 HOH AAA 207 607 236 HOH HOH . J 6 HOH AAA 208 608 217 HOH HOH . J 6 HOH AAA 209 609 290 HOH HOH . J 6 HOH AAA 210 610 138 HOH HOH . J 6 HOH AAA 211 611 118 HOH HOH . J 6 HOH AAA 212 612 134 HOH HOH . J 6 HOH AAA 213 613 235 HOH HOH . J 6 HOH AAA 214 614 182 HOH HOH . J 6 HOH AAA 215 615 169 HOH HOH . J 6 HOH AAA 216 616 179 HOH HOH . J 6 HOH AAA 217 617 116 HOH HOH . J 6 HOH AAA 218 618 141 HOH HOH . J 6 HOH AAA 219 619 280 HOH HOH . J 6 HOH AAA 220 620 77 HOH HOH . J 6 HOH AAA 221 621 124 HOH HOH . J 6 HOH AAA 222 622 71 HOH HOH . J 6 HOH AAA 223 623 249 HOH HOH . J 6 HOH AAA 224 624 263 HOH HOH . J 6 HOH AAA 225 625 84 HOH HOH . J 6 HOH AAA 226 626 121 HOH HOH . J 6 HOH AAA 227 627 291 HOH HOH . J 6 HOH AAA 228 628 122 HOH HOH . J 6 HOH AAA 229 629 136 HOH HOH . J 6 HOH AAA 230 630 281 HOH HOH . J 6 HOH AAA 231 631 114 HOH HOH . J 6 HOH AAA 232 632 261 HOH HOH . J 6 HOH AAA 233 633 162 HOH HOH . J 6 HOH AAA 234 634 301 HOH HOH . J 6 HOH AAA 235 635 268 HOH HOH . J 6 HOH AAA 236 636 183 HOH HOH . J 6 HOH AAA 237 637 267 HOH HOH . J 6 HOH AAA 238 638 159 HOH HOH . J 6 HOH AAA 239 639 101 HOH HOH . J 6 HOH AAA 240 640 284 HOH HOH . J 6 HOH AAA 241 641 168 HOH HOH . J 6 HOH AAA 242 642 264 HOH HOH . J 6 HOH AAA 243 643 299 HOH HOH . J 6 HOH AAA 244 644 181 HOH HOH . J 6 HOH AAA 245 645 176 HOH HOH . J 6 HOH AAA 246 646 278 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 5 1.206 0.346 8.161 0.33 22.91 ? C1 MPD 307 AAA 1 HETATM 2 C C2 MPD . . . H 5 0.179 -0.026 9.221 0.33 23.55 ? C2 MPD 307 AAA 1 HETATM 3 O O2 MPD . . . H 5 -0.141 -1.419 9.044 0.33 26.26 ? O2 MPD 307 AAA 1 HETATM 4 C CM MPD . . . H 5 -1.105 0.767 9.032 0.33 25.02 ? CM MPD 307 AAA 1 HETATM 5 C C3 MPD . . . H 5 0.742 0.159 10.633 0.33 21.9 ? C3 MPD 307 AAA 1 HETATM 6 C C4 MPD . . . H 5 -0.077 -0.53 11.697 0.33 19.6 ? C4 MPD 307 AAA 1 HETATM 7 O O4 MPD . . . H 5 0.338 -1.885 11.768 0.33 18.88 ? O4 MPD 307 AAA 1 HETATM 8 C C5 MPD . . . H 5 0.014 0.067 13.068 0.33 18.61 ? C5 MPD 307 AAA 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #