data_7L82 # _model_server_result.job_id m1oCvoLdWHSSORFwpTpcew _model_server_result.datetime_utc '2025-01-11 09:06:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7L82 # _exptl.entry_id 7L82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7L82 _cell.length_a 97.237 _cell.length_b 97.237 _cell.length_c 66.173 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 7L82 _atom_sites.fract_transf_matrix[1][1] 0.010284 _atom_sites.fract_transf_matrix[1][2] 0.005938 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XQD AAA 1 301 301 XQD LIG . C 3 CL AAA 1 302 1 CL CL . D 4 MPD AAA 1 303 1 MPD MPD . E 4 MPD AAA 1 304 2 MPD MPD . F 4 MPD AAA 1 305 3 MPD MPD . G 4 MPD AAA 1 306 4 MPD MPD . H 4 MPD AAA 1 307 5 MPD MPD . I 5 HOH AAA 1 401 188 HOH HOH . I 5 HOH AAA 2 402 90 HOH HOH . I 5 HOH AAA 3 403 185 HOH HOH . I 5 HOH AAA 4 404 199 HOH HOH . I 5 HOH AAA 5 405 175 HOH HOH . I 5 HOH AAA 6 406 67 HOH HOH . I 5 HOH AAA 7 407 91 HOH HOH . I 5 HOH AAA 8 408 186 HOH HOH . I 5 HOH AAA 9 409 88 HOH HOH . I 5 HOH AAA 10 410 28 HOH HOH . I 5 HOH AAA 11 411 294 HOH HOH . I 5 HOH AAA 12 412 163 HOH HOH . I 5 HOH AAA 13 413 200 HOH HOH . I 5 HOH AAA 14 414 190 HOH HOH . I 5 HOH AAA 15 415 266 HOH HOH . I 5 HOH AAA 16 416 312 HOH HOH . I 5 HOH AAA 17 417 314 HOH HOH . I 5 HOH AAA 18 418 229 HOH HOH . I 5 HOH AAA 19 419 253 HOH HOH . I 5 HOH AAA 20 420 300 HOH HOH . I 5 HOH AAA 21 421 173 HOH HOH . I 5 HOH AAA 22 422 80 HOH HOH . I 5 HOH AAA 23 423 85 HOH HOH . I 5 HOH AAA 24 424 232 HOH HOH . I 5 HOH AAA 25 425 76 HOH HOH . I 5 HOH AAA 26 426 68 HOH HOH . I 5 HOH AAA 27 427 37 HOH HOH . I 5 HOH AAA 28 428 250 HOH HOH . I 5 HOH AAA 29 429 228 HOH HOH . I 5 HOH AAA 30 430 64 HOH HOH . I 5 HOH AAA 31 431 63 HOH HOH . I 5 HOH AAA 32 432 15 HOH HOH . I 5 HOH AAA 33 433 44 HOH HOH . I 5 HOH AAA 34 434 215 HOH HOH . I 5 HOH AAA 35 435 72 HOH HOH . I 5 HOH AAA 36 436 66 HOH HOH . I 5 HOH AAA 37 437 73 HOH HOH . I 5 HOH AAA 38 438 262 HOH HOH . I 5 HOH AAA 39 439 143 HOH HOH . I 5 HOH AAA 40 440 54 HOH HOH . I 5 HOH AAA 41 441 50 HOH HOH . I 5 HOH AAA 42 442 7 HOH HOH . I 5 HOH AAA 43 443 302 HOH HOH . I 5 HOH AAA 44 444 82 HOH HOH . I 5 HOH AAA 45 445 227 HOH HOH . I 5 HOH AAA 46 446 30 HOH HOH . I 5 HOH AAA 47 447 203 HOH HOH . I 5 HOH AAA 48 448 218 HOH HOH . I 5 HOH AAA 49 449 306 HOH HOH . I 5 HOH AAA 50 450 187 HOH HOH . I 5 HOH AAA 51 451 42 HOH HOH . I 5 HOH AAA 52 452 222 HOH HOH . I 5 HOH AAA 53 453 32 HOH HOH . I 5 HOH AAA 54 454 20 HOH HOH . I 5 HOH AAA 55 455 10 HOH HOH . I 5 HOH AAA 56 456 59 HOH HOH . I 5 HOH AAA 57 457 96 HOH HOH . I 5 HOH AAA 58 458 237 HOH HOH . I 5 HOH AAA 59 459 292 HOH HOH . I 5 HOH AAA 60 460 130 HOH HOH . I 5 HOH AAA 61 461 95 HOH HOH . I 5 HOH AAA 62 462 246 HOH HOH . I 5 HOH AAA 63 463 98 HOH HOH . I 5 HOH AAA 64 464 2 HOH HOH . I 5 HOH AAA 65 465 297 HOH HOH . I 5 HOH AAA 66 466 133 HOH HOH . I 5 HOH AAA 67 467 14 HOH HOH . I 5 HOH AAA 68 468 8 HOH HOH . I 5 HOH AAA 69 469 89 HOH HOH . I 5 HOH AAA 70 470 46 HOH HOH . I 5 HOH AAA 71 471 239 HOH HOH . I 5 HOH AAA 72 472 252 HOH HOH . I 5 HOH AAA 73 473 61 HOH HOH . I 5 HOH AAA 74 474 22 HOH HOH . I 5 HOH AAA 75 475 17 HOH HOH . I 5 HOH AAA 76 476 140 HOH HOH . I 5 HOH AAA 77 477 51 HOH HOH . I 5 HOH AAA 78 478 56 HOH HOH . I 5 HOH AAA 79 479 111 HOH HOH . I 5 HOH AAA 80 480 107 HOH HOH . I 5 HOH AAA 81 481 231 HOH HOH . I 5 HOH AAA 82 482 105 HOH HOH . I 5 HOH AAA 83 483 206 HOH HOH . I 5 HOH AAA 84 484 39 HOH HOH . I 5 HOH AAA 85 485 230 HOH HOH . I 5 HOH AAA 86 486 244 HOH HOH . I 5 HOH AAA 87 487 26 HOH HOH . I 5 HOH AAA 88 488 251 HOH HOH . I 5 HOH AAA 89 489 43 HOH HOH . I 5 HOH AAA 90 490 221 HOH HOH . I 5 HOH AAA 91 491 41 HOH HOH . I 5 HOH AAA 92 492 3 HOH HOH . I 5 HOH AAA 93 493 152 HOH HOH . I 5 HOH AAA 94 494 248 HOH HOH . I 5 HOH AAA 95 495 284 HOH HOH . I 5 HOH AAA 96 496 298 HOH HOH . I 5 HOH AAA 97 497 9 HOH HOH . I 5 HOH AAA 98 498 287 HOH HOH . I 5 HOH AAA 99 499 209 HOH HOH . I 5 HOH AAA 100 500 270 HOH HOH . I 5 HOH AAA 101 501 70 HOH HOH . I 5 HOH AAA 102 502 47 HOH HOH . I 5 HOH AAA 103 503 142 HOH HOH . I 5 HOH AAA 104 504 1 HOH HOH . I 5 HOH AAA 105 505 286 HOH HOH . I 5 HOH AAA 106 506 299 HOH HOH . I 5 HOH AAA 107 507 288 HOH HOH . I 5 HOH AAA 108 508 154 HOH HOH . I 5 HOH AAA 109 509 23 HOH HOH . I 5 HOH AAA 110 510 40 HOH HOH . I 5 HOH AAA 111 511 214 HOH HOH . I 5 HOH AAA 112 512 278 HOH HOH . I 5 HOH AAA 113 513 5 HOH HOH . I 5 HOH AAA 114 514 48 HOH HOH . I 5 HOH AAA 115 515 127 HOH HOH . I 5 HOH AAA 116 516 106 HOH HOH . I 5 HOH AAA 117 517 192 HOH HOH . I 5 HOH AAA 118 518 58 HOH HOH . I 5 HOH AAA 119 519 12 HOH HOH . I 5 HOH AAA 120 520 290 HOH HOH . I 5 HOH AAA 121 521 94 HOH HOH . I 5 HOH AAA 122 522 24 HOH HOH . I 5 HOH AAA 123 523 86 HOH HOH . I 5 HOH AAA 124 524 204 HOH HOH . I 5 HOH AAA 125 525 226 HOH HOH . I 5 HOH AAA 126 526 29 HOH HOH . I 5 HOH AAA 127 527 4 HOH HOH . I 5 HOH AAA 128 528 241 HOH HOH . I 5 HOH AAA 129 529 245 HOH HOH . I 5 HOH AAA 130 530 18 HOH HOH . I 5 HOH AAA 131 531 36 HOH HOH . I 5 HOH AAA 132 532 285 HOH HOH . I 5 HOH AAA 133 533 280 HOH HOH . I 5 HOH AAA 134 534 210 HOH HOH . I 5 HOH AAA 135 535 16 HOH HOH . I 5 HOH AAA 136 536 119 HOH HOH . I 5 HOH AAA 137 537 219 HOH HOH . I 5 HOH AAA 138 538 225 HOH HOH . I 5 HOH AAA 139 539 281 HOH HOH . I 5 HOH AAA 140 540 156 HOH HOH . I 5 HOH AAA 141 541 166 HOH HOH . I 5 HOH AAA 142 542 291 HOH HOH . I 5 HOH AAA 143 543 99 HOH HOH . I 5 HOH AAA 144 544 194 HOH HOH . I 5 HOH AAA 145 545 275 HOH HOH . I 5 HOH AAA 146 546 27 HOH HOH . I 5 HOH AAA 147 547 198 HOH HOH . I 5 HOH AAA 148 548 13 HOH HOH . I 5 HOH AAA 149 549 31 HOH HOH . I 5 HOH AAA 150 550 69 HOH HOH . I 5 HOH AAA 151 551 197 HOH HOH . I 5 HOH AAA 152 552 223 HOH HOH . I 5 HOH AAA 153 553 87 HOH HOH . I 5 HOH AAA 154 554 81 HOH HOH . I 5 HOH AAA 155 555 11 HOH HOH . I 5 HOH AAA 156 556 45 HOH HOH . I 5 HOH AAA 157 557 213 HOH HOH . I 5 HOH AAA 158 558 78 HOH HOH . I 5 HOH AAA 159 559 75 HOH HOH . I 5 HOH AAA 160 560 102 HOH HOH . I 5 HOH AAA 161 561 33 HOH HOH . I 5 HOH AAA 162 562 57 HOH HOH . I 5 HOH AAA 163 563 313 HOH HOH . I 5 HOH AAA 164 564 92 HOH HOH . I 5 HOH AAA 165 565 265 HOH HOH . I 5 HOH AAA 166 566 311 HOH HOH . I 5 HOH AAA 167 567 60 HOH HOH . I 5 HOH AAA 168 568 150 HOH HOH . I 5 HOH AAA 169 569 161 HOH HOH . I 5 HOH AAA 170 570 38 HOH HOH . I 5 HOH AAA 171 571 135 HOH HOH . I 5 HOH AAA 172 572 216 HOH HOH . I 5 HOH AAA 173 573 100 HOH HOH . I 5 HOH AAA 174 574 212 HOH HOH . I 5 HOH AAA 175 575 131 HOH HOH . I 5 HOH AAA 176 576 282 HOH HOH . I 5 HOH AAA 177 577 93 HOH HOH . I 5 HOH AAA 178 578 139 HOH HOH . I 5 HOH AAA 179 579 97 HOH HOH . I 5 HOH AAA 180 580 238 HOH HOH . I 5 HOH AAA 181 581 53 HOH HOH . I 5 HOH AAA 182 582 240 HOH HOH . I 5 HOH AAA 183 583 115 HOH HOH . I 5 HOH AAA 184 584 120 HOH HOH . I 5 HOH AAA 185 585 171 HOH HOH . I 5 HOH AAA 186 586 25 HOH HOH . I 5 HOH AAA 187 587 126 HOH HOH . I 5 HOH AAA 188 588 247 HOH HOH . I 5 HOH AAA 189 589 62 HOH HOH . I 5 HOH AAA 190 590 242 HOH HOH . I 5 HOH AAA 191 591 157 HOH HOH . I 5 HOH AAA 192 592 52 HOH HOH . I 5 HOH AAA 193 593 191 HOH HOH . I 5 HOH AAA 194 594 55 HOH HOH . I 5 HOH AAA 195 595 65 HOH HOH . I 5 HOH AAA 196 596 211 HOH HOH . I 5 HOH AAA 197 597 283 HOH HOH . I 5 HOH AAA 198 598 224 HOH HOH . I 5 HOH AAA 199 599 234 HOH HOH . I 5 HOH AAA 200 600 83 HOH HOH . I 5 HOH AAA 201 601 195 HOH HOH . I 5 HOH AAA 202 602 180 HOH HOH . I 5 HOH AAA 203 603 307 HOH HOH . I 5 HOH AAA 204 604 220 HOH HOH . I 5 HOH AAA 205 605 243 HOH HOH . I 5 HOH AAA 206 606 35 HOH HOH . I 5 HOH AAA 207 607 301 HOH HOH . I 5 HOH AAA 208 608 205 HOH HOH . I 5 HOH AAA 209 609 217 HOH HOH . I 5 HOH AAA 210 610 138 HOH HOH . I 5 HOH AAA 211 611 134 HOH HOH . I 5 HOH AAA 212 612 289 HOH HOH . I 5 HOH AAA 213 613 305 HOH HOH . I 5 HOH AAA 214 614 169 HOH HOH . I 5 HOH AAA 215 615 182 HOH HOH . I 5 HOH AAA 216 616 303 HOH HOH . I 5 HOH AAA 217 617 235 HOH HOH . I 5 HOH AAA 218 618 118 HOH HOH . I 5 HOH AAA 219 619 148 HOH HOH . I 5 HOH AAA 220 620 179 HOH HOH . I 5 HOH AAA 221 621 116 HOH HOH . I 5 HOH AAA 222 622 141 HOH HOH . I 5 HOH AAA 223 623 77 HOH HOH . I 5 HOH AAA 224 624 71 HOH HOH . I 5 HOH AAA 225 625 84 HOH HOH . I 5 HOH AAA 226 626 263 HOH HOH . I 5 HOH AAA 227 627 249 HOH HOH . I 5 HOH AAA 228 628 121 HOH HOH . I 5 HOH AAA 229 629 159 HOH HOH . I 5 HOH AAA 230 630 122 HOH HOH . I 5 HOH AAA 231 631 162 HOH HOH . I 5 HOH AAA 232 632 273 HOH HOH . I 5 HOH AAA 233 633 136 HOH HOH . I 5 HOH AAA 234 634 168 HOH HOH . I 5 HOH AAA 235 635 114 HOH HOH . I 5 HOH AAA 236 636 261 HOH HOH . I 5 HOH AAA 237 637 183 HOH HOH . I 5 HOH AAA 238 638 276 HOH HOH . I 5 HOH AAA 239 639 308 HOH HOH . I 5 HOH AAA 240 640 101 HOH HOH . I 5 HOH AAA 241 641 264 HOH HOH . I 5 HOH AAA 242 642 296 HOH HOH . I 5 HOH AAA 243 643 304 HOH HOH . I 5 HOH AAA 244 644 295 HOH HOH . I 5 HOH AAA 245 645 181 HOH HOH . I 5 HOH AAA 246 646 267 HOH HOH . I 5 HOH AAA 247 647 309 HOH HOH . I 5 HOH AAA 248 648 310 HOH HOH . I 5 HOH AAA 249 649 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 4 -19.467 -10.388 8.242 1 26.92 ? C1 MPD 303 AAA 1 HETATM 2 C C2 MPD . . . D 4 -19.137 -11.241 9.466 1 27.55 ? C2 MPD 303 AAA 1 HETATM 3 O O2 MPD . . . D 4 -20.022 -10.885 10.534 1 25.08 ? O2 MPD 303 AAA 1 HETATM 4 C CM MPD . . . D 4 -17.714 -11.013 9.961 1 30.57 ? CM MPD 303 AAA 1 HETATM 5 C C3 MPD . . . D 4 -19.372 -12.723 9.151 1 26.88 ? C3 MPD 303 AAA 1 HETATM 6 C C4 MPD . . . D 4 -19.373 -13.733 10.297 1 30.1 ? C4 MPD 303 AAA 1 HETATM 7 O O4 MPD . . . D 4 -20.15 -13.319 11.428 1 26.6 ? O4 MPD 303 AAA 1 HETATM 8 C C5 MPD . . . D 4 -19.864 -15.083 9.795 1 30.01 ? C5 MPD 303 AAA 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #