data_7L8N # _model_server_result.job_id TpwuQC8nVfqVEeUFbzAosA _model_server_result.datetime_utc '2025-02-27 07:17:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7L8N # _exptl.entry_id 7L8N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L8N _cell.length_a 76.36 _cell.length_b 84.59 _cell.length_c 100.24 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 19 n n P O2P AMP sing 20 n n P O3P AMP sing 21 n n P O5' AMP sing 22 n n O2P HOP2 AMP sing 23 n n O3P HOP3 AMP sing 24 n n O5' C5' AMP sing 25 n n C5' C4' AMP sing 26 n n C5' "H5'1" AMP sing 27 n n C5' "H5'2" AMP sing 28 n n C4' O4' AMP sing 29 n n C4' C3' AMP sing 30 n n C4' H4' AMP sing 31 n n O4' C1' AMP sing 32 n n C3' O3' AMP sing 33 n n C3' C2' AMP sing 34 n n C3' H3' AMP sing 35 n n O3' HO3' AMP sing 36 n n C2' O2' AMP sing 37 n n C2' C1' AMP sing 38 n n C2' H2' AMP sing 39 n n O2' HO2' AMP sing 40 n n C1' N9 AMP sing 41 n n C1' H1' AMP sing 42 n n N9 C8 AMP sing 43 n y N9 C4 AMP sing 44 n y C8 N7 AMP doub 45 n y C8 H8 AMP sing 46 n n N7 C5 AMP sing 47 n y C5 C6 AMP sing 48 n y C5 C4 AMP doub 49 n y C6 N6 AMP sing 50 n n C6 N1 AMP doub 51 n y N6 HN61 AMP sing 52 n n N6 HN62 AMP sing 53 n n N1 C2 AMP sing 54 n y C2 N3 AMP doub 55 n y C2 H2 AMP sing 56 n n N3 C4 AMP sing 57 n y # _atom_sites.entry_id 7L8N _atom_sites.fract_transf_matrix[1][1] 0.013096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 301 1 AMP AMP . D 3 ACT A 1 302 1 ACT ACT . E 3 ACT A 1 303 2 ACT ACT . F 4 MLI B 1 301 1 MLI MLI . G 5 CL B 1 302 1 CL CL . H 5 CL B 1 303 2 CL CL . I 6 HOH A 1 401 25 HOH HOH . I 6 HOH A 2 402 33 HOH HOH . I 6 HOH A 3 403 117 HOH HOH . I 6 HOH A 4 404 104 HOH HOH . I 6 HOH A 5 405 61 HOH HOH . I 6 HOH A 6 406 21 HOH HOH . I 6 HOH A 7 407 5 HOH HOH . I 6 HOH A 8 408 186 HOH HOH . I 6 HOH A 9 409 153 HOH HOH . I 6 HOH A 10 410 11 HOH HOH . I 6 HOH A 11 411 18 HOH HOH . I 6 HOH A 12 412 140 HOH HOH . I 6 HOH A 13 413 43 HOH HOH . I 6 HOH A 14 414 48 HOH HOH . I 6 HOH A 15 415 157 HOH HOH . I 6 HOH A 16 416 107 HOH HOH . I 6 HOH A 17 417 45 HOH HOH . I 6 HOH A 18 418 134 HOH HOH . I 6 HOH A 19 419 49 HOH HOH . I 6 HOH A 20 420 51 HOH HOH . I 6 HOH A 21 421 115 HOH HOH . I 6 HOH A 22 422 88 HOH HOH . I 6 HOH A 23 423 119 HOH HOH . I 6 HOH A 24 424 52 HOH HOH . I 6 HOH A 25 425 89 HOH HOH . I 6 HOH A 26 426 9 HOH HOH . I 6 HOH A 27 427 81 HOH HOH . I 6 HOH A 28 428 203 HOH HOH . I 6 HOH A 29 429 22 HOH HOH . I 6 HOH A 30 430 10 HOH HOH . I 6 HOH A 31 431 103 HOH HOH . I 6 HOH A 32 432 44 HOH HOH . I 6 HOH A 33 433 31 HOH HOH . I 6 HOH A 34 434 17 HOH HOH . I 6 HOH A 35 435 7 HOH HOH . I 6 HOH A 36 436 26 HOH HOH . I 6 HOH A 37 437 114 HOH HOH . I 6 HOH A 38 438 63 HOH HOH . I 6 HOH A 39 439 60 HOH HOH . I 6 HOH A 40 440 8 HOH HOH . I 6 HOH A 41 441 155 HOH HOH . I 6 HOH A 42 442 15 HOH HOH . I 6 HOH A 43 443 35 HOH HOH . I 6 HOH A 44 444 12 HOH HOH . I 6 HOH A 45 445 99 HOH HOH . I 6 HOH A 46 446 53 HOH HOH . I 6 HOH A 47 447 62 HOH HOH . I 6 HOH A 48 448 69 HOH HOH . I 6 HOH A 49 449 146 HOH HOH . I 6 HOH A 50 450 85 HOH HOH . I 6 HOH A 51 451 100 HOH HOH . I 6 HOH A 52 452 198 HOH HOH . I 6 HOH A 53 453 40 HOH HOH . I 6 HOH A 54 454 68 HOH HOH . I 6 HOH A 55 455 176 HOH HOH . I 6 HOH A 56 456 142 HOH HOH . I 6 HOH A 57 457 1 HOH HOH . I 6 HOH A 58 458 32 HOH HOH . I 6 HOH A 59 459 183 HOH HOH . I 6 HOH A 60 460 113 HOH HOH . I 6 HOH A 61 461 57 HOH HOH . I 6 HOH A 62 462 80 HOH HOH . I 6 HOH A 63 463 56 HOH HOH . I 6 HOH A 64 464 152 HOH HOH . I 6 HOH A 65 465 195 HOH HOH . I 6 HOH A 66 466 193 HOH HOH . I 6 HOH A 67 467 79 HOH HOH . I 6 HOH A 68 468 208 HOH HOH . I 6 HOH A 69 469 86 HOH HOH . I 6 HOH A 70 470 154 HOH HOH . I 6 HOH A 71 471 50 HOH HOH . I 6 HOH A 72 472 90 HOH HOH . I 6 HOH A 73 473 202 HOH HOH . I 6 HOH A 74 474 121 HOH HOH . I 6 HOH A 75 475 191 HOH HOH . I 6 HOH A 76 476 94 HOH HOH . I 6 HOH A 77 477 166 HOH HOH . I 6 HOH A 78 478 187 HOH HOH . I 6 HOH A 79 479 168 HOH HOH . I 6 HOH A 80 480 201 HOH HOH . I 6 HOH A 81 481 120 HOH HOH . I 6 HOH A 82 482 196 HOH HOH . I 6 HOH A 83 483 73 HOH HOH . I 6 HOH A 84 484 109 HOH HOH . I 6 HOH A 85 485 181 HOH HOH . I 6 HOH A 86 486 67 HOH HOH . I 6 HOH A 87 487 37 HOH HOH . I 6 HOH A 88 488 170 HOH HOH . I 6 HOH A 89 489 118 HOH HOH . I 6 HOH A 90 490 158 HOH HOH . I 6 HOH A 91 491 171 HOH HOH . I 6 HOH A 92 492 136 HOH HOH . I 6 HOH A 93 493 190 HOH HOH . I 6 HOH A 94 494 161 HOH HOH . I 6 HOH A 95 495 172 HOH HOH . I 6 HOH A 96 496 194 HOH HOH . I 6 HOH A 97 497 24 HOH HOH . I 6 HOH A 98 498 210 HOH HOH . I 6 HOH A 99 499 110 HOH HOH . I 6 HOH A 100 500 138 HOH HOH . I 6 HOH A 101 501 95 HOH HOH . I 6 HOH A 102 502 143 HOH HOH . I 6 HOH A 103 503 133 HOH HOH . I 6 HOH A 104 504 211 HOH HOH . I 6 HOH A 105 505 141 HOH HOH . J 6 HOH B 1 401 116 HOH HOH . J 6 HOH B 2 402 135 HOH HOH . J 6 HOH B 3 403 106 HOH HOH . J 6 HOH B 4 404 97 HOH HOH . J 6 HOH B 5 405 38 HOH HOH . J 6 HOH B 6 406 112 HOH HOH . J 6 HOH B 7 407 105 HOH HOH . J 6 HOH B 8 408 111 HOH HOH . J 6 HOH B 9 409 180 HOH HOH . J 6 HOH B 10 410 3 HOH HOH . J 6 HOH B 11 411 66 HOH HOH . J 6 HOH B 12 412 4 HOH HOH . J 6 HOH B 13 413 159 HOH HOH . J 6 HOH B 14 414 23 HOH HOH . J 6 HOH B 15 415 102 HOH HOH . J 6 HOH B 16 416 175 HOH HOH . J 6 HOH B 17 417 27 HOH HOH . J 6 HOH B 18 418 20 HOH HOH . J 6 HOH B 19 419 122 HOH HOH . J 6 HOH B 20 420 82 HOH HOH . J 6 HOH B 21 421 13 HOH HOH . J 6 HOH B 22 422 28 HOH HOH . J 6 HOH B 23 423 14 HOH HOH . J 6 HOH B 24 424 47 HOH HOH . J 6 HOH B 25 425 188 HOH HOH . J 6 HOH B 26 426 19 HOH HOH . J 6 HOH B 27 427 92 HOH HOH . J 6 HOH B 28 428 214 HOH HOH . J 6 HOH B 29 429 42 HOH HOH . J 6 HOH B 30 430 30 HOH HOH . J 6 HOH B 31 431 76 HOH HOH . J 6 HOH B 32 432 127 HOH HOH . J 6 HOH B 33 433 205 HOH HOH . J 6 HOH B 34 434 72 HOH HOH . J 6 HOH B 35 435 75 HOH HOH . J 6 HOH B 36 436 70 HOH HOH . J 6 HOH B 37 437 64 HOH HOH . J 6 HOH B 38 438 98 HOH HOH . J 6 HOH B 39 439 16 HOH HOH . J 6 HOH B 40 440 199 HOH HOH . J 6 HOH B 41 441 192 HOH HOH . J 6 HOH B 42 442 6 HOH HOH . J 6 HOH B 43 443 162 HOH HOH . J 6 HOH B 44 444 160 HOH HOH . J 6 HOH B 45 445 2 HOH HOH . J 6 HOH B 46 446 55 HOH HOH . J 6 HOH B 47 447 34 HOH HOH . J 6 HOH B 48 448 177 HOH HOH . J 6 HOH B 49 449 179 HOH HOH . J 6 HOH B 50 450 59 HOH HOH . J 6 HOH B 51 451 132 HOH HOH . J 6 HOH B 52 452 29 HOH HOH . J 6 HOH B 53 453 213 HOH HOH . J 6 HOH B 54 454 96 HOH HOH . J 6 HOH B 55 455 65 HOH HOH . J 6 HOH B 56 456 39 HOH HOH . J 6 HOH B 57 457 185 HOH HOH . J 6 HOH B 58 458 200 HOH HOH . J 6 HOH B 59 459 124 HOH HOH . J 6 HOH B 60 460 209 HOH HOH . J 6 HOH B 61 461 174 HOH HOH . J 6 HOH B 62 462 169 HOH HOH . J 6 HOH B 63 463 212 HOH HOH . J 6 HOH B 64 464 184 HOH HOH . J 6 HOH B 65 465 207 HOH HOH . J 6 HOH B 66 466 129 HOH HOH . J 6 HOH B 67 467 125 HOH HOH . J 6 HOH B 68 468 182 HOH HOH . J 6 HOH B 69 469 91 HOH HOH . J 6 HOH B 70 470 71 HOH HOH . J 6 HOH B 71 471 93 HOH HOH . J 6 HOH B 72 472 128 HOH HOH . J 6 HOH B 73 473 197 HOH HOH . J 6 HOH B 74 474 215 HOH HOH . J 6 HOH B 75 475 167 HOH HOH . J 6 HOH B 76 476 87 HOH HOH . J 6 HOH B 77 477 156 HOH HOH . J 6 HOH B 78 478 108 HOH HOH . J 6 HOH B 79 479 165 HOH HOH . J 6 HOH B 80 480 204 HOH HOH . J 6 HOH B 81 481 137 HOH HOH . J 6 HOH B 82 482 216 HOH HOH . J 6 HOH B 83 483 189 HOH HOH . J 6 HOH B 84 484 83 HOH HOH . J 6 HOH B 85 485 74 HOH HOH . J 6 HOH B 86 486 54 HOH HOH . J 6 HOH B 87 487 123 HOH HOH . J 6 HOH B 88 488 139 HOH HOH . J 6 HOH B 89 489 206 HOH HOH . J 6 HOH B 90 490 84 HOH HOH . J 6 HOH B 91 491 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 2 4.094 8.33 128.49 1 66.57 ? P AMP 301 A 1 HETATM 2 O O1P AMP . . . C 2 2.945 7.994 127.57 1 61.48 ? O1P AMP 301 A 1 HETATM 3 O O2P AMP . . . C 2 3.916 7.77 129.893 1 49.57 ? O2P AMP 301 A 1 HETATM 4 O O3P AMP . . . C 2 4.578 9.77 128.395 1 53.31 ? O3P AMP 301 A 1 HETATM 5 O O5' AMP . . . C 2 5.294 7.466 127.87 1 49.04 ? O5' AMP 301 A 1 HETATM 6 C C5' AMP . . . C 2 5.711 7.671 126.526 1 48.86 ? C5' AMP 301 A 1 HETATM 7 C C4' AMP . . . C 2 6.346 6.436 125.942 1 47.87 ? C4' AMP 301 A 1 HETATM 8 O O4' AMP . . . C 2 7.518 6.085 126.736 1 45.05 ? O4' AMP 301 A 1 HETATM 9 C C3' AMP . . . C 2 5.461 5.179 125.92 1 48.17 ? C3' AMP 301 A 1 HETATM 10 O O3' AMP . . . C 2 5.733 4.414 124.742 1 38.77 ? O3' AMP 301 A 1 HETATM 11 C C2' AMP . . . C 2 5.956 4.397 127.132 1 42.93 ? C2' AMP 301 A 1 HETATM 12 O O2' AMP . . . C 2 5.737 3.009 127.074 1 48.77 ? O2' AMP 301 A 1 HETATM 13 C C1' AMP . . . C 2 7.443 4.721 127.088 1 38.55 ? C1' AMP 301 A 1 HETATM 14 N N9 AMP . . . C 2 8.146 4.509 128.342 1 39.87 ? N9 AMP 301 A 1 HETATM 15 C C8 AMP . . . C 2 7.768 4.922 129.577 1 38.33 ? C8 AMP 301 A 1 HETATM 16 N N7 AMP . . . C 2 8.684 4.522 130.494 1 41.31 ? N7 AMP 301 A 1 HETATM 17 C C5 AMP . . . C 2 9.633 3.836 129.83 1 34.86 ? C5 AMP 301 A 1 HETATM 18 C C6 AMP . . . C 2 10.863 3.16 130.203 1 31.61 ? C6 AMP 301 A 1 HETATM 19 N N6 AMP . . . C 2 11.196 3.183 131.505 1 32.12 ? N6 AMP 301 A 1 HETATM 20 N N1 AMP . . . C 2 11.582 2.559 129.24 1 31.1 ? N1 AMP 301 A 1 HETATM 21 C C2 AMP . . . C 2 11.194 2.566 127.951 1 27.29 ? C2 AMP 301 A 1 HETATM 22 N N3 AMP . . . C 2 10.078 3.181 127.523 1 34.44 ? N3 AMP 301 A 1 HETATM 23 C C4 AMP . . . C 2 9.274 3.813 128.41 1 34.15 ? C4 AMP 301 A 1 HETATM 24 H "H5'1" AMP . . . C 2 6.427 8.495 126.492 1 58.68 ? "H5'1" AMP 301 A 1 HETATM 25 H "H5'2" AMP . . . C 2 4.847 7.952 125.92 1 58.68 ? "H5'2" AMP 301 A 1 HETATM 26 H H4' AMP . . . C 2 6.647 6.663 124.91 1 57.49 ? H4' AMP 301 A 1 HETATM 27 H H3' AMP . . . C 2 4.401 5.453 126.016 1 57.86 ? H3' AMP 301 A 1 HETATM 28 H HO3' AMP . . . C 2 5.611 3.474 124.933 1 46.58 ? HO3' AMP 301 A 1 HETATM 29 H H2' AMP . . . C 2 5.501 4.815 128.041 1 51.58 ? H2' AMP 301 A 1 HETATM 30 H HO2' AMP . . . C 2 4.787 2.831 127.097 1 58.58 ? HO2' AMP 301 A 1 HETATM 31 H H1' AMP . . . C 2 7.919 4.11 126.309 1 46.32 ? H1' AMP 301 A 1 HETATM 32 H H8 AMP . . . C 2 6.871 5.487 129.797 1 46.05 ? H8 AMP 301 A 1 HETATM 33 H HN61 AMP . . . C 2 12.012 2.718 131.826 1 38.6 ? HN61 AMP 301 A 1 HETATM 34 H HN62 AMP . . . C 2 10.595 3.649 132.172 1 38.6 ? HN62 AMP 301 A 1 HETATM 35 H H2 AMP . . . C 2 11.81 2.05 127.225 1 32.8 ? H2 AMP 301 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 834 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 35 #