data_7L8O # _model_server_result.job_id ElWHOamzWJ679qBo4F3UaQ _model_server_result.datetime_utc '2025-01-11 19:05:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":402}' # _entry.id 7L8O # _exptl.entry_id 7L8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7L8O _cell.length_a 122.039 _cell.length_b 122.039 _cell.length_c 160.787 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,Y 1 1 D,U,V,W,X,BA 1 2 B,K,L,M,N,O,P,Q,Z 2 1 C,R,S,T,AA 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_544 -y,x-y-1,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 61.0195 -105.688874 -53.595667 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 61.0195 105.688874 53.595667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 K N N ? 2 L N N ? 2 R N N ? 2 U N N ? 2 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 51 A PHE 72 1_555 A N KCX 52 A KCX 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C KCX 52 A KCX 73 1_555 A N ILE 53 A ILE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C PHE 51 B PHE 72 1_555 B N KCX 52 B KCX 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B C KCX 52 B KCX 73 1_555 B N ILE 53 B ILE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 C C PHE 51 C PHE 72 1_555 C N KCX 52 C KCX 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C KCX 52 C KCX 73 1_555 C N ILE 53 C ILE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 D C PHE 51 D PHE 72 1_555 D N KCX 52 D KCX 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 D C KCX 52 D KCX 73 1_555 D N ILE 53 D ILE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OG SER 49 A SER 70 1_555 H NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc2 A O TYR 190 A TYR 211 1_555 H NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc3 B OG SER 49 B SER 70 1_555 N NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc4 B O THR 50 B THR 71 1_555 P NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc5 B OH TYR 123 B TYR 144 1_555 P NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc6 B OE1 GLN 148 B GLN 169 1_555 P NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc7 B O TYR 190 B TYR 211 1_555 N NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc8 B OE2 GLU 206 B GLU 227 1_555 O NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc9 O NA NA . B NA 405 1_555 AA O HOH . C HOH 504 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 7L8O _atom_sites.fract_transf_matrix[1][1] 0.008194 _atom_sites.fract_transf_matrix[1][2] 0.004731 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO A 1 401 401 EDO EDO . F 2 EDO A 1 402 501 EDO EDO . G 3 XV7 A 1 403 601 XV7 931 . H 4 NA A 1 404 1 NA NA . I 5 CL A 1 405 2 CL CL . J 5 CL A 1 406 5 CL CL . K 2 EDO B 1 401 401 EDO EDO . L 2 EDO B 1 402 501 EDO EDO . M 3 XV7 B 1 403 601 XV7 931 . N 4 NA B 1 404 2 NA NA . O 4 NA B 1 405 3 NA NA . P 4 NA B 1 406 4 NA NA . Q 5 CL B 1 407 4 CL CL . R 2 EDO C 1 401 401 EDO EDO . S 3 XV7 C 1 402 501 XV7 931 . T 5 CL C 1 403 1 CL CL . U 2 EDO D 1 501 501 EDO EDO . V 2 EDO D 1 502 601 EDO EDO . W 3 XV7 D 1 503 701 XV7 931 . X 5 CL D 1 504 3 CL CL . Y 6 HOH A 1 501 7 HOH HOH . Y 6 HOH A 2 502 33 HOH HOH . Y 6 HOH A 3 503 58 HOH HOH . Y 6 HOH A 4 504 9 HOH HOH . Y 6 HOH A 5 505 4 HOH HOH . Y 6 HOH A 6 506 61 HOH HOH . Y 6 HOH A 7 507 48 HOH HOH . Y 6 HOH A 8 508 19 HOH HOH . Y 6 HOH A 9 509 36 HOH HOH . Y 6 HOH A 10 510 31 HOH HOH . Y 6 HOH A 11 511 63 HOH HOH . Y 6 HOH A 12 512 12 HOH HOH . Y 6 HOH A 13 513 73 HOH HOH . Y 6 HOH A 14 514 17 HOH HOH . Y 6 HOH A 15 515 66 HOH HOH . Y 6 HOH A 16 516 37 HOH HOH . Y 6 HOH A 17 517 45 HOH HOH . Y 6 HOH A 18 518 69 HOH HOH . Y 6 HOH A 19 519 28 HOH HOH . Z 6 HOH B 1 501 13 HOH HOH . Z 6 HOH B 2 502 15 HOH HOH . Z 6 HOH B 3 503 74 HOH HOH . Z 6 HOH B 4 504 60 HOH HOH . Z 6 HOH B 5 505 24 HOH HOH . Z 6 HOH B 6 506 26 HOH HOH . Z 6 HOH B 7 507 59 HOH HOH . Z 6 HOH B 8 508 3 HOH HOH . Z 6 HOH B 9 509 16 HOH HOH . Z 6 HOH B 10 510 54 HOH HOH . Z 6 HOH B 11 511 25 HOH HOH . Z 6 HOH B 12 512 46 HOH HOH . Z 6 HOH B 13 513 67 HOH HOH . Z 6 HOH B 14 514 70 HOH HOH . Z 6 HOH B 15 515 51 HOH HOH . Z 6 HOH B 16 516 42 HOH HOH . Z 6 HOH B 17 517 32 HOH HOH . Z 6 HOH B 18 518 44 HOH HOH . Z 6 HOH B 19 519 41 HOH HOH . Z 6 HOH B 20 520 50 HOH HOH . AA 6 HOH C 1 501 8 HOH HOH . AA 6 HOH C 2 502 6 HOH HOH . AA 6 HOH C 3 503 39 HOH HOH . AA 6 HOH C 4 504 38 HOH HOH . AA 6 HOH C 5 505 21 HOH HOH . AA 6 HOH C 6 506 14 HOH HOH . AA 6 HOH C 7 507 1 HOH HOH . AA 6 HOH C 8 508 29 HOH HOH . AA 6 HOH C 9 509 23 HOH HOH . AA 6 HOH C 10 510 64 HOH HOH . AA 6 HOH C 11 511 47 HOH HOH . AA 6 HOH C 12 512 55 HOH HOH . AA 6 HOH C 13 513 30 HOH HOH . AA 6 HOH C 14 514 27 HOH HOH . AA 6 HOH C 15 515 49 HOH HOH . AA 6 HOH C 16 516 71 HOH HOH . AA 6 HOH C 17 517 56 HOH HOH . BA 6 HOH D 1 601 65 HOH HOH . BA 6 HOH D 2 602 5 HOH HOH . BA 6 HOH D 3 603 68 HOH HOH . BA 6 HOH D 4 604 11 HOH HOH . BA 6 HOH D 5 605 40 HOH HOH . BA 6 HOH D 6 606 18 HOH HOH . BA 6 HOH D 7 607 35 HOH HOH . BA 6 HOH D 8 608 22 HOH HOH . BA 6 HOH D 9 609 53 HOH HOH . BA 6 HOH D 10 610 43 HOH HOH . BA 6 HOH D 11 611 2 HOH HOH . BA 6 HOH D 12 612 20 HOH HOH . BA 6 HOH D 13 613 62 HOH HOH . BA 6 HOH D 14 614 52 HOH HOH . BA 6 HOH D 15 615 57 HOH HOH . BA 6 HOH D 16 616 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 2 62.841 10.196 81.646 1 58.73 ? C1 EDO 402 B 1 HETATM 2 O O1 EDO . . . L 2 63.939 10.366 80.734 1 56.66 ? O1 EDO 402 B 1 HETATM 3 C C2 EDO . . . L 2 62.29 11.566 82.048 1 59.56 ? C2 EDO 402 B 1 HETATM 4 O O2 EDO . . . L 2 61.566 11.49 83.287 1 58.67 ? O2 EDO 402 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #