data_7L9A
#
_model_server_result.job_id            Zdxfc95X6OFBBpy7eBjJOA 
_model_server_result.datetime_utc      '2024-11-23 04:33:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7l9a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    7L9A 
#
_exptl.entry_id    7L9A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     'BRDt BD2 inhibitor' 
_entity.formula_weight              546.619 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~1~-(5-{[3-(4-amino-2-methylphenyl)-1-methyl-1H-indazole-5-carbonyl]amino}-2-methylphenyl)-N~4~-methylbenzene-1,4-dicarboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7L9A 
_cell.length_a            56.47 
_cell.length_b            56.47 
_cell.length_c            191.901 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7L9A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C32 H30 N6 O3' 
_chem_comp.formula_weight    546.619 
_chem_comp.id                XWP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~1~-(5-{[3-(4-amino-2-methylphenyl)-1-methyl-1H-indazole-5-carbonyl]amino}-2-methylphenyl)-N~4~-methylbenzene-1,4-dicarboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C31 C30 XWP sing 385 n n 
C32 N4 XWP sing 386 n n 
C29 C30 XWP doub 387 n y 
C29 C28 XWP sing 388 n y 
N5 N4 XWP sing 389 n y 
N5 C22 XWP doub 390 n y 
C30 C25 XWP sing 391 n y 
N4 C21 XWP sing 392 n y 
N6 C28 XWP sing 393 n n 
C28 C27 XWP doub 394 n y 
C25 C22 XWP sing 395 n n 
C25 C26 XWP doub 396 n y 
C22 C23 XWP sing 397 n y 
C27 C26 XWP sing 398 n y 
C21 C23 XWP doub 399 n y 
C21 C20 XWP sing 400 n y 
C23 C24 XWP sing 401 n y 
C20 C19 XWP doub 402 n y 
C24 C18 XWP doub 403 n y 
C19 C18 XWP sing 404 n y 
C18 C17 XWP sing 405 n n 
C17 N3 XWP sing 406 n n 
C17 O3 XWP doub 407 n n 
N3 C12 XWP sing 408 n n 
C12 C11 XWP doub 409 n y 
C12 C13 XWP sing 410 n y 
C11 C10 XWP sing 411 n y 
C13 C14 XWP doub 412 n y 
C10 N2 XWP sing 413 n n 
C10 C15 XWP doub 414 n y 
N2 C9 XWP sing 415 n n 
C9 O2 XWP doub 416 n n 
C9 C6 XWP sing 417 n n 
C14 C15 XWP sing 418 n y 
C5 C6 XWP doub 419 n y 
C5 C4 XWP sing 420 n y 
C6 C7 XWP sing 421 n y 
C15 C16 XWP sing 422 n n 
C4 C3 XWP doub 423 n y 
C7 C8 XWP doub 424 n y 
C3 C8 XWP sing 425 n y 
C3 C2 XWP sing 426 n n 
C2 N1 XWP sing 427 n n 
C2 O1 XWP doub 428 n n 
N1 C1 XWP sing 429 n n 
C1 H2 XWP sing 430 n n 
C1 H1 XWP sing 431 n n 
C1 H3 XWP sing 432 n n 
N2 H9 XWP sing 433 n n 
C4 H5 XWP sing 434 n n 
C5 H6 XWP sing 435 n n 
C11 H10 XWP sing 436 n n 
C19 H17 XWP sing 437 n n 
C24 H19 XWP sing 438 n n 
C29 H22 XWP sing 439 n n 
C13 H11 XWP sing 440 n n 
C14 H12 XWP sing 441 n n 
C16 H13 XWP sing 442 n n 
C16 H14 XWP sing 443 n n 
C16 H15 XWP sing 444 n n 
C20 H18 XWP sing 445 n n 
C26 H20 XWP sing 446 n n 
C27 H21 XWP sing 447 n n 
C31 H24 XWP sing 448 n n 
C31 H25 XWP sing 449 n n 
C31 H23 XWP sing 450 n n 
C32 H29 XWP sing 451 n n 
C32 H28 XWP sing 452 n n 
C32 H30 XWP sing 453 n n 
C7 H7 XWP sing 454 n n 
C8 H8 XWP sing 455 n n 
N1 H4 XWP sing 456 n n 
N3 H16 XWP sing 457 n n 
N6 H26 XWP sing 458 n n 
N6 H27 XWP sing 459 n n 
#
_atom_sites.entry_id                     7L9A 
_atom_sites.fract_transf_matrix[1][1]    0.017709 
_atom_sites.fract_transf_matrix[1][2]    0.010224 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020448 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005211 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XWP A 1 401 800 XWP CDD . 
D 3 BME A 1 402 1 BME BME . 
E 2 XWP B 1 401 800 XWP CDD . 
F 3 BME B 1 402 2 BME BME . 
G 4 HOH A 1 501 20 HOH HOH . 
G 4 HOH A 2 502 11 HOH HOH . 
G 4 HOH A 3 503 32 HOH HOH . 
G 4 HOH A 4 504 29 HOH HOH . 
G 4 HOH A 5 505 21 HOH HOH . 
G 4 HOH A 6 506 22 HOH HOH . 
G 4 HOH A 7 507 28 HOH HOH . 
G 4 HOH A 8 508 31 HOH HOH . 
G 4 HOH A 9 509 41 HOH HOH . 
G 4 HOH A 10 510 27 HOH HOH . 
G 4 HOH A 11 511 4 HOH HOH . 
G 4 HOH A 12 512 12 HOH HOH . 
G 4 HOH A 13 513 17 HOH HOH . 
G 4 HOH A 14 514 33 HOH HOH . 
G 4 HOH A 15 515 42 HOH HOH . 
G 4 HOH A 16 516 24 HOH HOH . 
G 4 HOH A 17 517 30 HOH HOH . 
G 4 HOH A 18 518 14 HOH HOH . 
G 4 HOH A 19 519 13 HOH HOH . 
G 4 HOH A 20 520 15 HOH HOH . 
G 4 HOH A 21 521 35 HOH HOH . 
H 4 HOH B 1 501 8 HOH HOH . 
H 4 HOH B 2 502 3 HOH HOH . 
H 4 HOH B 3 503 1 HOH HOH . 
H 4 HOH B 4 504 7 HOH HOH . 
H 4 HOH B 5 505 23 HOH HOH . 
H 4 HOH B 6 506 10 HOH HOH . 
H 4 HOH B 7 507 25 HOH HOH . 
H 4 HOH B 8 508 34 HOH HOH . 
H 4 HOH B 9 509 9 HOH HOH . 
H 4 HOH B 10 510 18 HOH HOH . 
H 4 HOH B 11 511 16 HOH HOH . 
H 4 HOH B 12 512 19 HOH HOH . 
H 4 HOH B 13 513 37 HOH HOH . 
H 4 HOH B 14 514 40 HOH HOH . 
H 4 HOH B 15 515 26 HOH HOH . 
H 4 HOH B 16 516 2 HOH HOH . 
H 4 HOH B 17 517 38 HOH HOH . 
H 4 HOH B 18 518 36 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 XWP . . . E 2 16.551 -5.86 -14.794 1 39.12 ? C1 XWP 401 B 1 
HETATM 2 N N2 XWP . . . E 2 19.472 -11.285 -8.661 1 38.79 ? N2 XWP 401 B 1 
HETATM 3 C C3 XWP . . . E 2 17.866 -7.205 -11.364 1 39.29 ? C3 XWP 401 B 1 
HETATM 4 C C4 XWP . . . E 2 18 -8.558 -11.65 1 39.11 ? C4 XWP 401 B 1 
HETATM 5 C C5 XWP . . . E 2 18.531 -9.418 -10.705 1 39.01 ? C5 XWP 401 B 1 
HETATM 6 C C6 XWP . . . E 2 18.917 -8.91 -9.472 1 39.7 ? C6 XWP 401 B 1 
HETATM 7 C C11 XWP . . . E 2 19.156 -13.048 -7.015 1 38.64 ? C11 XWP 401 B 1 
HETATM 8 C C12 XWP . . . E 2 19.651 -13.928 -6.069 1 38.7 ? C12 XWP 401 B 1 
HETATM 9 C C18 XWP . . . E 2 17.734 -16.148 -3.462 1 36.51 ? C18 XWP 401 B 1 
HETATM 10 C C19 XWP . . . E 2 17.96 -16.832 -2.268 1 36.47 ? C19 XWP 401 B 1 
HETATM 11 C C21 XWP . . . E 2 15.744 -17.797 -2.484 1 36.72 ? C21 XWP 401 B 1 
HETATM 12 C C22 XWP . . . E 2 14.196 -17.491 -4.105 1 36.29 ? C22 XWP 401 B 1 
HETATM 13 C C24 XWP . . . E 2 16.534 -16.278 -4.16 1 35.33 ? C24 XWP 401 B 1 
HETATM 14 C C25 XWP . . . E 2 13.509 -17.067 -5.256 1 37.03 ? C25 XWP 401 B 1 
HETATM 15 C C29 XWP . . . E 2 12.01 -17.453 -7.132 1 37.46 ? C29 XWP 401 B 1 
HETATM 16 C C30 XWP . . . E 2 12.674 -17.921 -6.002 1 37.67 ? C30 XWP 401 B 1 
HETATM 17 C C2 XWP . . . E 2 17.276 -6.267 -12.417 1 39.68 ? C2 XWP 401 B 1 
HETATM 18 O O1 XWP . . . E 2 16.928 -5.174 -12.109 1 40.03 ? O1 XWP 401 B 1 
HETATM 19 C C10 XWP . . . E 2 20.026 -12.198 -7.676 1 39.2 ? C10 XWP 401 B 1 
HETATM 20 C C13 XWP . . . E 2 21.013 -13.965 -5.773 1 39.4 ? C13 XWP 401 B 1 
HETATM 21 C C14 XWP . . . E 2 21.889 -13.111 -6.428 1 39.44 ? C14 XWP 401 B 1 
HETATM 22 C C15 XWP . . . E 2 21.397 -12.23 -7.389 1 39.99 ? C15 XWP 401 B 1 
HETATM 23 C C16 XWP . . . E 2 22.377 -11.299 -8.103 1 39.69 ? C16 XWP 401 B 1 
HETATM 24 C C17 XWP . . . E 2 18.815 -15.229 -4.014 1 37.39 ? C17 XWP 401 B 1 
HETATM 25 C C20 XWP . . . E 2 16.966 -17.656 -1.769 1 36.48 ? C20 XWP 401 B 1 
HETATM 26 C C23 XWP . . . E 2 15.511 -17.124 -3.659 1 35.95 ? C23 XWP 401 B 1 
HETATM 27 C C26 XWP . . . E 2 13.637 -15.746 -5.69 1 37.77 ? C26 XWP 401 B 1 
HETATM 28 C C27 XWP . . . E 2 12.969 -15.28 -6.823 1 37.8 ? C27 XWP 401 B 1 
HETATM 29 C C28 XWP . . . E 2 12.148 -16.139 -7.549 1 38.14 ? C28 XWP 401 B 1 
HETATM 30 C C31 XWP . . . E 2 12.434 -19.388 -5.641 1 36.57 ? C31 XWP 401 B 1 
HETATM 31 C C32 XWP . . . E 2 14.492 -19.389 -1.038 1 37.16 ? C32 XWP 401 B 1 
HETATM 32 C C7 XWP . . . E 2 18.781 -7.56 -9.181 1 39.19 ? C7 XWP 401 B 1 
HETATM 33 C C8 XWP . . . E 2 18.251 -6.704 -10.133 1 39.31 ? C8 XWP 401 B 1 
HETATM 34 C C9 XWP . . . E 2 19.499 -9.851 -8.426 1 39.24 ? C9 XWP 401 B 1 
HETATM 35 N N1 XWP . . . E 2 17.118 -6.738 -13.783 1 39.02 ? N1 XWP 401 B 1 
HETATM 36 N N3 XWP . . . E 2 18.701 -14.805 -5.412 1 37.88 ? N3 XWP 401 B 1 
HETATM 37 N N4 XWP . . . E 2 14.649 -18.535 -2.202 1 37.54 ? N4 XWP 401 B 1 
HETATM 38 N N5 XWP . . . E 2 13.725 -18.323 -3.178 1 37.1 ? N5 XWP 401 B 1 
HETATM 39 N N6 XWP . . . E 2 11.436 -15.682 -8.734 1 37.82 ? N6 XWP 401 B 1 
HETATM 40 O O2 XWP . . . E 2 19.986 -9.411 -7.444 1 39.47 ? O2 XWP 401 B 1 
HETATM 41 O O3 XWP . . . E 2 19.695 -14.879 -3.306 1 36.71 ? O3 XWP 401 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           41 
#