data_7L9J # _model_server_result.job_id n6huz3rc9rVI7QScMHomOg _model_server_result.datetime_utc '2024-11-05 07:00:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7l9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7L9J # _exptl.entry_id 7L9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 543.609 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7L9J _cell.length_a 52.33 _cell.length_b 72.148 _cell.length_c 31.938 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7L9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H35 F2 N7 O3' _chem_comp.formula_weight 543.609 _chem_comp.id 79C _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F19 C18 79C sing 1 n n C18 F20 79C sing 2 n n C18 C21 79C sing 3 n n C18 C16 79C sing 4 n n O17 C16 79C doub 5 n n C21 N22 79C sing 6 n n C26 C25 79C sing 7 n n C26 C27 79C sing 8 n n C25 C24 79C sing 9 n n C16 N14 79C sing 10 n n C24 C23 79C sing 11 n n C27 C23 79C sing 12 n n N22 C23 79C sing 13 n n N22 C28 79C sing 14 n n N14 C15 79C sing 15 n n N14 C13 79C sing 16 n n C28 C13 79C doub 17 n y C28 N29 79C sing 18 n y C13 C12 79C sing 19 n y C37 N36 79C sing 20 n n N36 C35 79C sing 21 n n N36 C38 79C sing 22 n n N29 C10 79C doub 23 n y C35 C34 79C sing 24 n n C12 N11 79C doub 25 n y C34 C33 79C sing 26 n n C38 C39 79C sing 27 n n C39 C33 79C sing 28 n n C10 N11 79C sing 29 n y C10 N9 79C sing 30 n n C7 C6 79C doub 31 n y C7 C8 79C sing 32 n y N32 C33 79C sing 33 n n N32 C30 79C sing 34 n n C6 C5 79C sing 35 n y N9 C8 79C sing 36 n n C8 C3 79C doub 37 n y C5 C30 79C sing 38 n n C5 C4 79C doub 39 n y C30 O31 79C doub 40 n n C3 C4 79C sing 41 n y C3 O2 79C sing 42 n n O2 C1 79C sing 43 n n C4 H1 79C sing 44 n n C6 H2 79C sing 45 n n C7 H3 79C sing 46 n n C15 H4 79C sing 47 n n C15 H5 79C sing 48 n n C15 H6 79C sing 49 n n C21 H7 79C sing 50 n n C21 H8 79C sing 51 n n C24 H9 79C sing 52 n n C24 H10 79C sing 53 n n C26 H11 79C sing 54 n n C26 H12 79C sing 55 n n C1 H13 79C sing 56 n n C1 H14 79C sing 57 n n C1 H15 79C sing 58 n n N9 H16 79C sing 59 n n C12 H17 79C sing 60 n n C23 H18 79C sing 61 n n C25 H19 79C sing 62 n n C25 H20 79C sing 63 n n C27 H21 79C sing 64 n n C27 H22 79C sing 65 n n N32 H23 79C sing 66 n n C33 H24 79C sing 67 n n C34 H25 79C sing 68 n n C34 H26 79C sing 69 n n C35 H27 79C sing 70 n n C35 H28 79C sing 71 n n C37 H30 79C sing 72 n n C37 H31 79C sing 73 n n C37 H32 79C sing 74 n n C38 H33 79C sing 75 n n C38 H34 79C sing 76 n n C39 H35 79C sing 77 n n C39 H36 79C sing 78 n n # _atom_sites.entry_id 7L9J _atom_sites.fract_transf_matrix[1][1] 0.019109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 79C A 1 501 1 79C 79C . C 3 CL A 1 502 1 CL CL . D 4 HOH A 1 601 102 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 33 HOH HOH . D 4 HOH A 4 604 54 HOH HOH . D 4 HOH A 5 605 1 HOH HOH . D 4 HOH A 6 606 80 HOH HOH . D 4 HOH A 7 607 31 HOH HOH . D 4 HOH A 8 608 38 HOH HOH . D 4 HOH A 9 609 65 HOH HOH . D 4 HOH A 10 610 13 HOH HOH . D 4 HOH A 11 611 85 HOH HOH . D 4 HOH A 12 612 86 HOH HOH . D 4 HOH A 13 613 7 HOH HOH . D 4 HOH A 14 614 93 HOH HOH . D 4 HOH A 15 615 21 HOH HOH . D 4 HOH A 16 616 15 HOH HOH . D 4 HOH A 17 617 89 HOH HOH . D 4 HOH A 18 618 9 HOH HOH . D 4 HOH A 19 619 39 HOH HOH . D 4 HOH A 20 620 6 HOH HOH . D 4 HOH A 21 621 8 HOH HOH . D 4 HOH A 22 622 27 HOH HOH . D 4 HOH A 23 623 19 HOH HOH . D 4 HOH A 24 624 53 HOH HOH . D 4 HOH A 25 625 69 HOH HOH . D 4 HOH A 26 626 20 HOH HOH . D 4 HOH A 27 627 3 HOH HOH . D 4 HOH A 28 628 10 HOH HOH . D 4 HOH A 29 629 59 HOH HOH . D 4 HOH A 30 630 43 HOH HOH . D 4 HOH A 31 631 45 HOH HOH . D 4 HOH A 32 632 30 HOH HOH . D 4 HOH A 33 633 57 HOH HOH . D 4 HOH A 34 634 17 HOH HOH . D 4 HOH A 35 635 36 HOH HOH . D 4 HOH A 36 636 35 HOH HOH . D 4 HOH A 37 637 50 HOH HOH . D 4 HOH A 38 638 34 HOH HOH . D 4 HOH A 39 639 91 HOH HOH . D 4 HOH A 40 640 46 HOH HOH . D 4 HOH A 41 641 12 HOH HOH . D 4 HOH A 42 642 18 HOH HOH . D 4 HOH A 43 643 29 HOH HOH . D 4 HOH A 44 644 60 HOH HOH . D 4 HOH A 45 645 32 HOH HOH . D 4 HOH A 46 646 95 HOH HOH . D 4 HOH A 47 647 87 HOH HOH . D 4 HOH A 48 648 49 HOH HOH . D 4 HOH A 49 649 62 HOH HOH . D 4 HOH A 50 650 40 HOH HOH . D 4 HOH A 51 651 78 HOH HOH . D 4 HOH A 52 652 81 HOH HOH . D 4 HOH A 53 653 105 HOH HOH . D 4 HOH A 54 654 52 HOH HOH . D 4 HOH A 55 655 66 HOH HOH . D 4 HOH A 56 656 11 HOH HOH . D 4 HOH A 57 657 25 HOH HOH . D 4 HOH A 58 658 47 HOH HOH . D 4 HOH A 59 659 112 HOH HOH . D 4 HOH A 60 660 79 HOH HOH . D 4 HOH A 61 661 106 HOH HOH . D 4 HOH A 62 662 16 HOH HOH . D 4 HOH A 63 663 88 HOH HOH . D 4 HOH A 64 664 14 HOH HOH . D 4 HOH A 65 665 75 HOH HOH . D 4 HOH A 66 666 56 HOH HOH . D 4 HOH A 67 667 94 HOH HOH . D 4 HOH A 68 668 96 HOH HOH . D 4 HOH A 69 669 4 HOH HOH . D 4 HOH A 70 670 92 HOH HOH . D 4 HOH A 71 671 61 HOH HOH . D 4 HOH A 72 672 63 HOH HOH . D 4 HOH A 73 673 5 HOH HOH . D 4 HOH A 74 674 22 HOH HOH . D 4 HOH A 75 675 110 HOH HOH . D 4 HOH A 76 676 26 HOH HOH . D 4 HOH A 77 677 82 HOH HOH . D 4 HOH A 78 678 23 HOH HOH . D 4 HOH A 79 679 83 HOH HOH . D 4 HOH A 80 680 84 HOH HOH . D 4 HOH A 81 681 44 HOH HOH . D 4 HOH A 82 682 64 HOH HOH . D 4 HOH A 83 683 113 HOH HOH . D 4 HOH A 84 684 98 HOH HOH . D 4 HOH A 85 685 73 HOH HOH . D 4 HOH A 86 686 55 HOH HOH . D 4 HOH A 87 687 58 HOH HOH . D 4 HOH A 88 688 104 HOH HOH . D 4 HOH A 89 689 24 HOH HOH . D 4 HOH A 90 690 108 HOH HOH . D 4 HOH A 91 691 70 HOH HOH . D 4 HOH A 92 692 100 HOH HOH . D 4 HOH A 93 693 51 HOH HOH . D 4 HOH A 94 694 109 HOH HOH . D 4 HOH A 95 695 90 HOH HOH . D 4 HOH A 96 696 71 HOH HOH . D 4 HOH A 97 697 37 HOH HOH . D 4 HOH A 98 698 97 HOH HOH . D 4 HOH A 99 699 101 HOH HOH . D 4 HOH A 100 700 107 HOH HOH . D 4 HOH A 101 701 99 HOH HOH . D 4 HOH A 102 702 111 HOH HOH . D 4 HOH A 103 703 67 HOH HOH . D 4 HOH A 104 704 41 HOH HOH . D 4 HOH A 105 705 77 HOH HOH . D 4 HOH A 106 706 103 HOH HOH . D 4 HOH A 107 707 48 HOH HOH . D 4 HOH A 108 708 42 HOH HOH . D 4 HOH A 109 709 74 HOH HOH . D 4 HOH A 110 710 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 79C . . . B 2 23.235 -3.232 10.959 1 24.21 ? C4 79C 501 A 1 HETATM 2 C C5 79C . . . B 2 22.723 -4.047 11.967 1 28.4 ? C5 79C 501 A 1 HETATM 3 C C6 79C . . . B 2 21.49 -4.66 11.832 1 21.39 ? C6 79C 501 A 1 HETATM 4 C C7 79C . . . B 2 20.757 -4.449 10.673 1 19.29 ? C7 79C 501 A 1 HETATM 5 C C8 79C . . . B 2 21.259 -3.642 9.668 1 18.91 ? C8 79C 501 A 1 HETATM 6 C C10 79C . . . B 2 19.477 -3.686 7.857 1 14.17 ? C10 79C 501 A 1 HETATM 7 C C13 79C . . . B 2 17.095 -4.529 6.937 1 13.88 ? C13 79C 501 A 1 HETATM 8 C C15 79C . . . B 2 14.762 -3.828 6.234 1 13.7 ? C15 79C 501 A 1 HETATM 9 C C21 79C . . . B 2 16.778 -7.533 7.873 1 16.86 ? C21 79C 501 A 1 HETATM 10 C C24 79C . . . B 2 18.993 -7.628 9.68 1 16.52 ? C24 79C 501 A 1 HETATM 11 C C26 79C . . . B 2 17.859 -8.512 11.568 1 27.67 ? C26 79C 501 A 1 HETATM 12 C C28 79C . . . B 2 17.669 -5.175 8.021 1 13.8 ? C28 79C 501 A 1 HETATM 13 C C1 79C . . . B 2 24.353 -2.149 8.686 1 37.25 ? C1 79C 501 A 1 HETATM 14 O O2 79C . . . B 2 22.951 -2.217 8.757 1 26.82 ? O2 79C 501 A 1 HETATM 15 C C3 79C . . . B 2 22.493 -3.031 9.806 1 21.1 ? C3 79C 501 A 1 HETATM 16 N N9 79C . . . B 2 20.769 -3.222 8.348 1 17.76 ? N9 79C 501 A 1 HETATM 17 N N11 79C . . . B 2 18.907 -3.051 6.812 1 14.9 ? N11 79C 501 A 1 HETATM 18 C C12 79C . . . B 2 17.734 -3.461 6.376 1 17.05 ? C12 79C 501 A 1 HETATM 19 N N14 79C . . . B 2 15.749 -4.882 6.444 1 13.6 ? N14 79C 501 A 1 HETATM 20 C C16 79C . . . B 2 15.381 -6.231 6.223 1 14.27 ? C16 79C 501 A 1 HETATM 21 O O17 79C . . . B 2 14.25 -6.431 5.855 1 13.32 ? O17 79C 501 A 1 HETATM 22 C C18 79C . . . B 2 16.356 -7.333 6.434 1 13.33 ? C18 79C 501 A 1 HETATM 23 F F19 79C . . . B 2 15.745 -8.459 5.969 1 14.18 ? F19 79C 501 A 1 HETATM 24 F F20 79C . . . B 2 17.499 -7.087 5.726 1 14.19 ? F20 79C 501 A 1 HETATM 25 N N22 79C . . . B 2 16.974 -6.32 8.675 1 16.34 ? N22 79C 501 A 1 HETATM 26 C C23 79C . . . B 2 17.694 -6.701 9.929 1 16.45 ? C23 79C 501 A 1 HETATM 27 C C25 79C . . . B 2 18.844 -8.878 10.672 1 23.17 ? C25 79C 501 A 1 HETATM 28 C C27 79C . . . B 2 16.867 -7.453 10.747 1 20.22 ? C27 79C 501 A 1 HETATM 29 N N29 79C . . . B 2 18.851 -4.728 8.451 1 15.97 ? N29 79C 501 A 1 HETATM 30 C C30 79C . . . B 2 23.524 -4.301 13.259 1 35.57 ? C30 79C 501 A 1 HETATM 31 O O31 79C . . . B 2 24.554 -3.742 13.425 1 44.8 ? O31 79C 501 A 1 HETATM 32 N N32 79C . . . B 2 22.97 -5.259 14.233 1 41.89 ? N32 79C 501 A 1 HETATM 33 C C33 79C . . . B 2 23.638 -5.624 15.546 1 55.19 ? C33 79C 501 A 1 HETATM 34 C C34 79C . . . B 2 25.002 -6.181 15.269 1 60.11 ? C34 79C 501 A 1 HETATM 35 C C35 79C . . . B 2 25.903 -6.286 16.508 1 64.21 ? C35 79C 501 A 1 HETATM 36 N N36 79C . . . B 2 25.919 -5.021 17.314 1 66.83 ? N36 79C 501 A 1 HETATM 37 C C37 79C . . . B 2 26.621 -3.968 16.589 1 64.8 ? C37 79C 501 A 1 HETATM 38 C C38 79C . . . B 2 24.536 -4.58 17.68 1 63.71 ? C38 79C 501 A 1 HETATM 39 C C39 79C . . . B 2 23.64 -4.415 16.451 1 59.76 ? C39 79C 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #